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Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR01D120094.5
        

               
Conread position:
               
28-444
               

               
Cow position:
               
chr10:64306478-64306047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr10:43758088-43758371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr10:62777015-62777440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
29-456
               

               
Cow position:
               
chr10:62215294-62215734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
29-501
               

               
Cow position:
               
chr10:11469329-11469807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr10:25497010-25497507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 72
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr10:34684556-34685176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
30-643
               

               
Cow position:
               
chr10:29634168-29633560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
30-803
               

               
Cow position:
               
chr10:54126070-54126841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
792
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
31-643
               

               
Cow position:
               
chr10:60488211-60488818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
31-761
               

               
Cow position:
               
chr10:42627082-42627804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
32-444
               

               
Cow position:
               
chr10:275270-275687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
7, 73
               

               
Conread position:
               
32-828
               

               
Cow position:
               
chr10:42735117-42735911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
820
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
32-828
               

               
Cow position:
               
chr10:61295903-61296690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
815
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
33-417
               

               
Cow position:
               
chr10:54980378-54979999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 49
               

               
Conread position:
               
38-828
               

               
Cow position:
               
chr10:38547632-38546835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
43-642
               

               
Cow position:
               
chr10:26596158-26596764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
57-468
               

               
Cow position:
               
chr10:8329172-8328762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
111-454
               

               
Cow position:
               
chr10:10414630-10414977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 5
               

               
Conread position:
               
126-479
               

               
Cow position:
               
chr10:42657796-42658158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
45, 159
               

               
Conread position:
               
274-537
               

               
Cow position:
               
chr10:31522844-31523102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
32, 134
               

               
Conread position:
               
427-808
               

               
Cow position:
               
chr10:39780858-39780478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
28-310
               

               
Cow position:
               
chr11:24676309-24676598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
28-459
               

               
Cow position:
               
chr11:34019241-34019666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
29-237
               

               
Cow position:
               
chr11:75324004-75324217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
29-456
               

               
Cow position:
               
chr11:21463389-21463808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
36, 128
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr11:15996019-15996626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
30-434
               

               
Cow position:
               
chr11:75131797-75132203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
30-444
               

               
Cow position:
               
chr11:37493269-37492845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
30-446
               

               
Cow position:
               
chr11:10211683-10211261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
30-457
               

               
Cow position:
               
chr11:75918894-75919332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
31-637
               

               
Cow position:
               
chr11:7111702-7112321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
31-645
               

               
Cow position:
               
chr11:52461366-52461966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
33-577
               

               
Cow position:
               
chr11:77778922-77778372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
41-468
               

               
Cow position:
               
chr11:84920948-84921378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
44-334
               

               
Cow position:
               
chr11:35963513-35963218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
57-451
               

               
Cow position:
               
chr11:25392287-25392688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
58-497
               

               
Cow position:
               
chr11:13057861-13057420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 23
               

               
Conread position:
               
61-468
               

               
Cow position:
               
chr11:30303634-30304053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
108, 292
               

               
Conread position:
               
91-521
               

               
Cow position:
               
chr11:8282105-8282546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 14
               

               
Conread position:
               
95-474
               

               
Cow position:
               
chr11:40047848-40047462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
142, 6
               

               
Conread position:
               
109-615
               

               
Cow position:
               
chr11:44497216-44496716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 201
               

               
Conread position:
               
126-619
               

               
Cow position:
               
chr11:10077315-10076808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 178
               

               
Conread position:
               
161-445
               

               
Cow position:
               
chr11:9660944-9660651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
340-808
               

               
Cow position:
               
chr11:7393301-7393776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
349-828
               

               
Cow position:
               
chr11:24676614-24677097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 84
               

               
Conread position:
               
526-808
               

               
Cow position:
               
chr11:7686037-7686319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
526-828
               

               
Cow position:
               
chr11:76375744-76375436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
19-618
               

               
Cow position:
               
chr12:6615213-6615804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
152, 19
               

               
Conread position:
               
21-665
               

               
Cow position:
               
chr12:21896618-21897270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
26-518
               

               
Cow position:
               
chr12:22331217-22331721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
26-643
               

               
Cow position:
               
chr12:26794751-26795367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr12:41705892-41706398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
29-643
               

               
Cow position:
               
chr12:26948669-26948064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 15
               

               
Conread position:
               
30-468
               

               
Cow position:
               
chr12:23989492-23989936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
30-591
               

               
Cow position:
               
chr12:15956924-15956350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
30-609
               

               
Cow position:
               
chr12:8309623-8310202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 71
               

               
Conread position:
               
130-828
               

               
Cow position:
               
chr12:22120368-22121041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
251-568
               

               
Cow position:
               
chr12:21059241-21058930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
111, 72
               

               
Conread position:
               
554-828
               

               
Cow position:
               
chr12:21058923-21058644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 175
               

               
Conread position:
               
28-444
               

               
Cow position:
               
chr13:3275550-3275976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
29-324
               

               
Cow position:
               
chr13:34144518-34144214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
29-360
               

               
Cow position:
               
chr13:33929149-33928807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
29-424
               

               
Cow position:
               
chr13:34691678-34692081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
29-610
               

               
Cow position:
               
chr13:11828666-11828101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 213
               

               
Conread position:
               
29-804
               

               
Cow position:
               
chr13:34935131-34935934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
808
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
30-334
               

               
Cow position:
               
chr13:60649626-60649934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 29
               

               
Conread position:
               
30-456
               

               
Cow position:
               
chr13:30658563-30658129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
30-494
               

               
Cow position:
               
chr13:20544025-20543536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
31-423
               

               
Cow position:
               
chr13:33860098-33860484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
101, 70
               

               
Conread position:
               
31-468
               

               
Cow position:
               
chr13:41590730-41591181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
31-485
               

               
Cow position:
               
chr13:2913880-2913427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
33-551
               

               
Cow position:
               
chr13:20580696-20580181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
34-451
               

               
Cow position:
               
chr13:34769522-34769100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
57-592
               

               
Cow position:
               
chr13:5281660-5282211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
128-363
               

               
Cow position:
               
chr13:62329159-62328916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
148-454
               

               
Cow position:
               
chr13:49194124-49193810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
301-808
               

               
Cow position:
               
chr13:54283226-54283720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
519-826
               

               
Cow position:
               
chr13:20543541-20543251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
19-635
               

               
Cow position:
               
chr14:23691980-23691369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
29-396
               

               
Cow position:
               
chr14:22242089-22242463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
29-441
               

               
Cow position:
               
chr14:42150777-42151204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr14:44857712-44857281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 72
               

               
Conread position:
               
29-473
               

               
Cow position:
               
chr14:42403122-42403579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr14:41086556-41085952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr14:45713722-45713121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 41
               

               
Conread position:
               
29-643
               

               
Cow position:
               
chr14:47622826-47623426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
30-214
               

               
Cow position:
               
chr14:44224585-44224772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
30-302
               

               
Cow position:
               
chr14:33434336-33434056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
30-456
               

               
Cow position:
               
chr14:44421273-44421698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
31-506
               

               
Cow position:
               
chr14:44550294-44550773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
31-828
               

               
Cow position:
               
chr14:46082806-46083602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
32-454
               

               
Cow position:
               
chr14:37415301-37414867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
34-456
               

               
Cow position:
               
chr14:40337885-40338318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
48-504
               

               
Cow position:
               
chr14:45505747-45505281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
52-828
               

               
Cow position:
               
chr14:45305433-45304659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
793
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
57-450
               

               
Cow position:
               
chr14:45534150-45533753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
60-643
               

               
Cow position:
               
chr14:1498255-1498828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
190, 41
               

               
Conread position:
               
71-330
               

               
Cow position:
               
chr14:45849543-45849800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
80-445
               

               
Cow position:
               
chr14:35389173-35388798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
94-445
               

               
Cow position:
               
chr14:41771225-41771576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
98-451
               

               
Cow position:
               
chr14:36966089-36966452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
161-648
               

               
Cow position:
               
chr14:45766420-45766894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 268
               

               
Conread position:
               
442-715
               

               
Cow position:
               
chr14:45159407-45159684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
448-828
               

               
Cow position:
               
chr14:40338288-40338668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
475-828
               

               
Cow position:
               
chr14:50133538-50133888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 95
               

               
Conread position:
               
515-761
               

               
Cow position:
               
chr14:41771618-41771864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
518-752
               

               
Cow position:
               
chr14:35388747-35388509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
80, 91
               

               
Conread position:
               
527-826
               

               
Cow position:
               
chr14:45204755-45205051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
19-636
               

               
Cow position:
               
chr15:17273106-17272496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
26-326
               

               
Cow position:
               
chr15:35746591-35746895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
29-330
               

               
Cow position:
               
chr15:6372591-6372291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
221, 15
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr15:4731328-4731745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-471
               

               
Cow position:
               
chr15:23159036-23158612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
316, 46
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr15:6183412-6183915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr15:36647162-36647767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
29-646
               

               
Cow position:
               
chr15:4666607-4667222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
30-528
               

               
Cow position:
               
chr15:3039252-3038742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
31-219
               

               
Cow position:
               
chr15:45189344-45189535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
31-441
               

               
Cow position:
               
chr15:25791212-25790793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 70
               

               
Conread position:
               
31-444
               

               
Cow position:
               
chr15:6651991-6651565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
31-809
               

               
Cow position:
               
chr15:32681390-32680601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
540
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
32-363
               

               
Cow position:
               
chr15:21818326-21817987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
32-497
               

               
Cow position:
               
chr15:7895944-7895470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
32-828
               

               
Cow position:
               
chr15:35650011-35649218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
38-256
               

               
Cow position:
               
chr15:16592151-16591934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
48-473
               

               
Cow position:
               
chr15:3650585-3651028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 53
               

               
Conread position:
               
50-443
               

               
Cow position:
               
chr15:6077022-6077423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
57-619
               

               
Cow position:
               
chr15:4793961-4794507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 44
               

               
Conread position:
               
58-376
               

               
Cow position:
               
chr15:24792335-24792643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
192, 42
               

               
Conread position:
               
91-468
               

               
Cow position:
               
chr15:29289053-29288674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
113-712
               

               
Cow position:
               
chr15:36628897-36628310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
118-417
               

               
Cow position:
               
chr15:27066527-27066236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 113
               

               
Conread position:
               
126-733
               

               
Cow position:
               
chr15:36640975-36641577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 176
               

               
Conread position:
               
324-828
               

               
Cow position:
               
chr15:16591648-16591122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 155
               

               
Conread position:
               
494-808
               

               
Cow position:
               
chr15:32692182-32692495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
515-815
               

               
Cow position:
               
chr15:38958468-38958176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
171, 87
               

               
Conread position:
               
519-828
               

               
Cow position:
               
chr15:7932653-7932967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 54
               

               
Conread position:
               
527-808
               

               
Cow position:
               
chr15:21817644-21817363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 62
               

               
Conread position:
               
551-809
               

               
Cow position:
               
chr15:2923224-2923485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
574-828
               

               
Cow position:
               
chr15:24792782-24793040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 156
               

               
Conread position:
               
27-298
               

               
Cow position:
               
chr16:29030485-29030760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 45
               

               
Conread position:
               
29-400
               

               
Cow position:
               
chr16:42052453-42052079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr16:19714955-19714528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
140, 72
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr16:140398-140898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
30-214
               

               
Cow position:
               
chr16:42741964-42741784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
30-302
               

               
Cow position:
               
chr16:55650599-55650872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
222, 71
               

               
Conread position:
               
30-376
               

               
Cow position:
               
chr16:28876149-28876499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 27
               

               
Conread position:
               
30-444
               

               
Cow position:
               
chr16:29677385-29676964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
30-609
               

               
Cow position:
               
chr16:25256426-25257007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr16:49258733-49257970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
31-497
               

               
Cow position:
               
chr16:16228279-16228756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
31-648
               

               
Cow position:
               
chr16:28234778-28234175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 41
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr16:42106769-42107075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
32-456
               

               
Cow position:
               
chr16:32933720-32934158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
34-708
               

               
Cow position:
               
chr16:28157482-28158164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
57-463
               

               
Cow position:
               
chr16:20256373-20255961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
113, 44
               

               
Conread position:
               
58-422
               

               
Cow position:
               
chr16:5886636-5886995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
99-809
               

               
Cow position:
               
chr16:15368166-15368901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 394
               

               
Conread position:
               
126-733
               

               
Cow position:
               
chr16:49957207-49956586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
141-807
               

               
Cow position:
               
chr16:25151623-25152301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
192-635
               

               
Cow position:
               
chr16:44085923-44086362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
231-594
               

               
Cow position:
               
chr16:18689062-18688706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
251-828
               

               
Cow position:
               
chr16:16686801-16687397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 19
               

               
Conread position:
               
258-827
               

               
Cow position:
               
chr16:36234154-36233592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
310-665
               

               
Cow position:
               
chr16:42741164-42741518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
37, 159
               

               
Conread position:
               
361-828
               

               
Cow position:
               
chr16:29031090-29031549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 71
               

               
Conread position:
               
379-706
               

               
Cow position:
               
chr16:42107101-42107429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
219, 85
               

               
Conread position:
               
379-808
               

               
Cow position:
               
chr16:32934155-32934597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
536-808
               

               
Cow position:
               
chr16:9928311-9928594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
658-816
               

               
Cow position:
               
chr16:18688668-18688510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 121
               

               
Conread position:
               
21-808
               

               
Cow position:
               
chr17:15369507-15370279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
798
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 77
               

               
Conread position:
               
23-635
               

               
Cow position:
               
chr17:23842453-23843061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr17:2286037-2286461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr17:22432361-22431863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr17:32025708-32025111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
30-456
               

               
Cow position:
               
chr17:20089394-20088968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
30-463
               

               
Cow position:
               
chr17:1285265-1284822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
30-518
               

               
Cow position:
               
chr17:44854423-44853933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
100, 24
               

               
Conread position:
               
30-655
               

               
Cow position:
               
chr17:56201-55576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
31-445
               

               
Cow position:
               
chr17:1774088-1774503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
138, 70
               

               
Conread position:
               
31-468
               

               
Cow position:
               
chr17:31202268-31201814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
32-635
               

               
Cow position:
               
chr17:23858717-23858116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
32-786
               

               
Cow position:
               
chr17:14327881-14327150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
32-791
               

               
Cow position:
               
chr17:3695391-3694626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 353
               

               
Conread position:
               
41-468
               

               
Cow position:
               
chr17:156439-156012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
53-511
               

               
Cow position:
               
chr17:35590766-35591221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
117, 190
               

               
Conread position:
               
66-363
               

               
Cow position:
               
chr17:36798459-36798155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
111-436
               

               
Cow position:
               
chr17:1535494-1535158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
526-802
               

               
Cow position:
               
chr17:15416182-15416463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 128
               

               
Conread position:
               
28-619
               

               
Cow position:
               
chr18:1519834-1520413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
29-330
               

               
Cow position:
               
chr18:17995411-17995101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
29-423
               

               
Cow position:
               
chr18:53784187-53784594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
29-456
               

               
Cow position:
               
chr18:6871386-6870941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
29-463
               

               
Cow position:
               
chr18:33357570-33358013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
29-468
               

               
Cow position:
               
chr18:35334162-35334615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
29-619
               

               
Cow position:
               
chr18:43148272-43147661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 72
               

               
Conread position:
               
30-423
               

               
Cow position:
               
chr18:39745710-39746114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
30-424
               

               
Cow position:
               
chr18:30197412-30197808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
220, 71
               

               
Conread position:
               
30-569
               

               
Cow position:
               
chr18:12263181-12263720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
48-318
               

               
Cow position:
               
chr18:48220055-48220331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
123, 53
               

               
Conread position:
               
57-619
               

               
Cow position:
               
chr18:23945922-23945376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
141-811
               

               
Cow position:
               
chr18:43198979-43199657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
604-828
               

               
Cow position:
               
chr18:29235954-29236180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
17, 220
               

               
Conread position:
               
26-433
               

               
Cow position:
               
chr19:1030837-1031252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
144, 75
               

               
Conread position:
               
29-215
               

               
Cow position:
               
chr19:415686-415875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
29-442
               

               
Cow position:
               
chr19:29208265-29208690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr19:4534043-4533630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 72
               

               
Conread position:
               
29-516
               

               
Cow position:
               
chr19:24747115-24747611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr19:54714111-54713608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr19:3088127-3087519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
30-252
               

               
Cow position:
               
chr19:27056630-27056414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
30-330
               

               
Cow position:
               
chr19:30370671-30370981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-636
               

               
Cow position:
               
chr19:40818249-40817651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
30-643
               

               
Cow position:
               
chr19:351884-351274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
32-362
               

               
Cow position:
               
chr19:353975-353641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
119-504
               

               
Cow position:
               
chr19:14527362-14527721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
229, 46
               

               
Conread position:
               
126-518
               

               
Cow position:
               
chr19:32664353-32664763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
126-648
               

               
Cow position:
               
chr19:33180-33712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 351
               

               
Conread position:
               
145-488
               

               
Cow position:
               
chr19:800823-801170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 134
               

               
Conread position:
               
207-545
               

               
Cow position:
               
chr19:260448-260791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
207-798
               

               
Cow position:
               
chr19:39686804-39687404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 239
               

               
Conread position:
               
219-808
               

               
Cow position:
               
chr19:32224754-32224173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
283-782
               

               
Cow position:
               
chr19:27055385-27054885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
725-828
               

               
Cow position:
               
chr19:19179427-19179530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
12-230
               

               
Cow position:
               
chr20:30375945-30376159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 90
               

               
Conread position:
               
29-451
               

               
Cow position:
               
chr20:8314772-8314353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
140, 30
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr20:3253467-3252981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-594
               

               
Cow position:
               
chr20:19006986-19006419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 72
               

               
Conread position:
               
29-709
               

               
Cow position:
               
chr20:9522297-9521597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
32-295
               

               
Cow position:
               
chr20:28591862-28592133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
32-776
               

               
Cow position:
               
chr20:10103935-10103206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 28
               

               
Conread position:
               
33-238
               

               
Cow position:
               
chr20:39545157-39545362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
138, 59
               

               
Conread position:
               
33-436
               

               
Cow position:
               
chr20:15947918-15947504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
41-423
               

               
Cow position:
               
chr20:20250697-20250307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
17, 65
               

               
Conread position:
               
43-641
               

               
Cow position:
               
chr20:31848102-31847496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
56-619
               

               
Cow position:
               
chr20:9956246-9955668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
94-828
               

               
Cow position:
               
chr20:18316941-18316203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
160-619
               

               
Cow position:
               
chr20:5482980-5483436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 269
               

               
Conread position:
               
477-828
               

               
Cow position:
               
chr20:11277265-11276912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
118, 96
               

               
Conread position:
               
539-807
               

               
Cow position:
               
chr20:13681994-13681725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
661-828
               

               
Cow position:
               
chr20:15063956-15064121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
55, 66
               

               
Conread position:
               
680-796
               

               
Cow position:
               
chr20:10847065-10846948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
26-772
               

               
Cow position:
               
chr21:9890494-9891224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
29-217
               

               
Cow position:
               
chr21:18821543-18821353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
29-220
               

               
Cow position:
               
chr21:12629282-12629087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
29-409
               

               
Cow position:
               
chr21:4454868-4455260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
29-442
               

               
Cow position:
               
chr21:3425270-3425696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-456
               

               
Cow position:
               
chr21:4075615-4076056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-468
               

               
Cow position:
               
chr21:13125197-13124754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-648
               

               
Cow position:
               
chr21:2531355-2530744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 43
               

               
Conread position:
               
30-435
               

               
Cow position:
               
chr21:2707903-2708303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
30-444
               

               
Cow position:
               
chr21:3799625-3799197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-760
               

               
Cow position:
               
chr21:3982935-3983667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
517
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
30-808
               

               
Cow position:
               
chr21:28873120-28873923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
31-506
               

               
Cow position:
               
chr21:18284117-18284604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
31-544
               

               
Cow position:
               
chr21:9869259-9869777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
31-550
               

               
Cow position:
               
chr21:27560562-27561075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
32-575
               

               
Cow position:
               
chr21:23808387-23808952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
48-319
               

               
Cow position:
               
chr21:34260332-34260058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
48-468
               

               
Cow position:
               
chr21:2790114-2789690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
129, 53
               

               
Conread position:
               
49-456
               

               
Cow position:
               
chr21:29082853-29083272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
58-794
               

               
Cow position:
               
chr21:2543141-2542394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 43
               

               
Conread position:
               
91-518
               

               
Cow position:
               
chr21:34291631-34292065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
126-455
               

               
Cow position:
               
chr21:3357935-3357598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
160-544
               

               
Cow position:
               
chr21:13010216-13010598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
161-581
               

               
Cow position:
               
chr21:13161913-13162314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
161-806
               

               
Cow position:
               
chr21:15586097-15585486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
251-828
               

               
Cow position:
               
chr21:18821341-18820758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 127
               

               
Conread position:
               
252-454
               

               
Cow position:
               
chr21:33753705-33753909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
283-826
               

               
Cow position:
               
chr21:357810-358363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 63
               

               
Conread position:
               
475-809
               

               
Cow position:
               
chr21:2415370-2415703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 98
               

               
Conread position:
               
538-808
               

               
Cow position:
               
chr21:2500920-2501190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 19
               

               
Conread position:
               
595-825
               

               
Cow position:
               
chr21:23809018-23809246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
682-827
               

               
Cow position:
               
chr21:4182884-4183030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
17-808
               

               
Cow position:
               
chr22:41421268-41420464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
820
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
26-456
               

               
Cow position:
               
chr22:39883609-39883168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
28-329
               

               
Cow position:
               
chr22:37735399-37735707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
29-330
               

               
Cow position:
               
chr22:37145819-37146124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
29-416
               

               
Cow position:
               
chr22:36535278-36534884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
141, 72
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr22:37139906-37140400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
29-617
               

               
Cow position:
               
chr22:1314072-1313468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
30-246
               

               
Cow position:
               
chr22:46545245-46545462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
30-451
               

               
Cow position:
               
chr22:32489025-32488593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-588
               

               
Cow position:
               
chr22:3308417-3307872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-660
               

               
Cow position:
               
chr22:42770150-42770770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
30-827
               

               
Cow position:
               
chr22:8879791-8880566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
810
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr22:9464021-9464793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
810
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
31-274
               

               
Cow position:
               
chr22:6088695-6088448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
134, 31
               

               
Conread position:
               
31-828
               

               
Cow position:
               
chr22:11029195-11029974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
818
               

               
Alignm identity:
               
539
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
32-398
               

               
Cow position:
               
chr22:1318025-1318401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
32-466
               

               
Cow position:
               
chr22:36733717-36734157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
32-635
               

               
Cow position:
               
chr22:5671335-5671937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
32-808
               

               
Cow position:
               
chr22:6505330-6504548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
799
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
38-619
               

               
Cow position:
               
chr22:40379821-40380397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
48-498
               

               
Cow position:
               
chr22:32481884-32481430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
48-828
               

               
Cow position:
               
chr22:1294965-1294171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
815
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
59-690
               

               
Cow position:
               
chr22:34695066-34695726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 41
               

               
Conread position:
               
92-754
               

               
Cow position:
               
chr22:1286338-1285668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
111-619
               

               
Cow position:
               
chr22:119133-118628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
126-364
               

               
Cow position:
               
chr22:17072252-17072490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
130-466
               

               
Cow position:
               
chr22:8137568-8137220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
41, 229
               

               
Conread position:
               
207-614
               

               
Cow position:
               
chr22:8741585-8741173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 39
               

               
Conread position:
               
208-808
               

               
Cow position:
               
chr22:1271760-1271155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
250-578
               

               
Cow position:
               
chr22:1317539-1317867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
258-815
               

               
Cow position:
               
chr22:45881334-45880787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 46
               

               
Conread position:
               
373-789
               

               
Cow position:
               
chr22:17072722-17073142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 120
               

               
Conread position:
               
568-808
               

               
Cow position:
               
chr22:46636902-46636663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
594-828
               

               
Cow position:
               
chr22:3307638-3307400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 137
               

               
Conread position:
               
631-826
               

               
Cow position:
               
chr22:1320740-1320935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
11-444
               

               
Cow position:
               
chr23:990052-989609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
15-388
               

               
Cow position:
               
chr23:10557779-10557404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
26-825
               

               
Cow position:
               
chr23:1026515-1025727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
816
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 73
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr23:2768159-2767680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
219, 72
               

               
Conread position:
               
30-376
               

               
Cow position:
               
chr23:29475079-29474723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
30-444
               

               
Cow position:
               
chr23:2043424-2043860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-468
               

               
Cow position:
               
chr23:33732478-33732929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
31-619
               

               
Cow position:
               
chr23:5780836-5780251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
32-468
               

               
Cow position:
               
chr23:16618523-16618085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
50-248
               

               
Cow position:
               
chr23:22881616-22881415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
57-648
               

               
Cow position:
               
chr23:2525840-2525254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
70-636
               

               
Cow position:
               
chr23:31592947-31592390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 31
               

               
Conread position:
               
116-468
               

               
Cow position:
               
chr23:5878486-5878124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 108
               

               
Conread position:
               
172-715
               

               
Cow position:
               
chr23:1331261-1330709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
192-458
               

               
Cow position:
               
chr23:3011933-3012206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 42
               

               
Conread position:
               
251-409
               

               
Cow position:
               
chr23:10375556-10375394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
84, 95
               

               
Conread position:
               
251-634
               

               
Cow position:
               
chr23:31596364-31595993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
96, 35
               

               
Conread position:
               
306-605
               

               
Cow position:
               
chr23:10557069-10556763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
548-810
               

               
Cow position:
               
chr23:22880675-22880412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
50, 181
               

               
Conread position:
               
28-745
               

               
Cow position:
               
chr24:17315895-17315177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
745
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
29-397
               

               
Cow position:
               
chr24:13523661-13524044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr24:17183874-17184479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-635
               

               
Cow position:
               
chr24:17186229-17186834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-648
               

               
Cow position:
               
chr24:27206307-27206923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
30-322
               

               
Cow position:
               
chr24:40777774-40778075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-424
               

               
Cow position:
               
chr24:33358200-33358590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
30-468
               

               
Cow position:
               
chr24:6334355-6334796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
30-517
               

               
Cow position:
               
chr24:13532850-13532348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
30-618
               

               
Cow position:
               
chr24:12235699-12236288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr24:16650689-16649905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 27
               

               
Conread position:
               
32-392
               

               
Cow position:
               
chr24:12290759-12290391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
48-593
               

               
Cow position:
               
chr24:36561587-36561043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
83-803
               

               
Cow position:
               
chr24:33431383-33432089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
634-810
               

               
Cow position:
               
chr24:36561025-36560847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
20-518
               

               
Cow position:
               
chr25:18301391-18301887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
28-455
               

               
Cow position:
               
chr25:15377764-15378204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr25:34660471-34660053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
155, 15
               

               
Conread position:
               
30-619
               

               
Cow position:
               
chr25:18028993-18028398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 282
               

               
Conread position:
               
32-454
               

               
Cow position:
               
chr25:18091194-18091624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
32-468
               

               
Cow position:
               
chr25:12836879-12836429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
48-619
               

               
Cow position:
               
chr25:18061929-18061366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
51-537
               

               
Cow position:
               
chr25:18171925-18172413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 11
               

               
Conread position:
               
99-619
               

               
Cow position:
               
chr25:36238275-36238806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
253-443
               

               
Cow position:
               
chr25:14015118-14015313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
264-499
               

               
Cow position:
               
chr25:18412389-18412155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
191, 71
               

               
Conread position:
               
471-826
               

               
Cow position:
               
chr25:18276839-18276482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
127, 146
               

               
Conread position:
               
519-808
               

               
Cow position:
               
chr25:18091951-18092240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
565-803
               

               
Cow position:
               
chr25:18172415-18172655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
29-648
               

               
Cow position:
               
chr26:12575738-12575125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 65
               

               
Conread position:
               
29-672
               

               
Cow position:
               
chr26:23606249-23605604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
29-817
               

               
Cow position:
               
chr26:20031575-20032374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
30-430
               

               
Cow position:
               
chr26:21826695-21826288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr26:9847538-9846759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
32-798
               

               
Cow position:
               
chr26:9860372-9859611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
43-828
               

               
Cow position:
               
chr26:20300660-20299876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
50-338
               

               
Cow position:
               
chr26:3690649-3690938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
146, 51
               

               
Conread position:
               
282-724
               

               
Cow position:
               
chr26:21349804-21350263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
68, 197
               

               
Conread position:
               
476-828
               

               
Cow position:
               
chr26:34012045-34012400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
119, 94
               

               
Conread position:
               
611-828
               

               
Cow position:
               
chr26:9089916-9090133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 113
               

               
Conread position:
               
29-656
               

               
Cow position:
               
chr27:16437323-16437950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
143, 72
               

               
Conread position:
               
30-587
               

               
Cow position:
               
chr27:26557443-26556875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
30-594
               

               
Cow position:
               
chr27:16431078-16431634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
141, 71
               

               
Conread position:
               
30-655
               

               
Cow position:
               
chr27:15330613-15331266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
31-468
               

               
Cow position:
               
chr27:27306985-27307425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
32-451
               

               
Cow position:
               
chr27:31270105-31270527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
48-463
               

               
Cow position:
               
chr27:27050297-27050721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
169-763
               

               
Cow position:
               
chr27:25115933-25116548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 276
               

               
Conread position:
               
662-809
               

               
Cow position:
               
chr27:5060491-5060342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 54
               

               
Conread position:
               
12-454
               

               
Cow position:
               
chr28:5822586-5823032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 92
               

               
Conread position:
               
29-214
               

               
Cow position:
               
chr28:2590599-2590784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
127, 72
               

               
Conread position:
               
29-451
               

               
Cow position:
               
chr28:4384748-4384317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
29-462
               

               
Cow position:
               
chr28:22543529-22543971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
30-425
               

               
Cow position:
               
chr28:5763965-5764366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
30-476
               

               
Cow position:
               
chr28:10292708-10293157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr28:5811266-5812070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr28:21357575-21358380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
825
               

               
Alignm identity:
               
587
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
31-666
               

               
Cow position:
               
chr28:21324313-21324929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 67
               

               
Conread position:
               
32-408
               

               
Cow position:
               
chr28:26005984-26006375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
33-363
               

               
Cow position:
               
chr28:15572300-15572635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
33-566
               

               
Cow position:
               
chr28:12245934-12246461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
38-248
               

               
Cow position:
               
chr28:24666163-24666376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
55-672
               

               
Cow position:
               
chr28:25706638-25706019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 46
               

               
Conread position:
               
57-449
               

               
Cow position:
               
chr28:21928012-21928411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
64-828
               

               
Cow position:
               
chr28:7815866-7816617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
796
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 37
               

               
Conread position:
               
76-808
               

               
Cow position:
               
chr28:17313557-17314300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
513
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
116-733
               

               
Cow position:
               
chr28:30563849-30564497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
161-609
               

               
Cow position:
               
chr28:2924677-2925115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
244-433
               

               
Cow position:
               
chr28:8722564-8722382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
251-808
               

               
Cow position:
               
chr28:25784306-25784860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
266-828
               

               
Cow position:
               
chr28:24666423-24666974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
271-586
               

               
Cow position:
               
chr28:7791924-7791613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
475-805
               

               
Cow position:
               
chr28:1388351-1388024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 95
               

               
Conread position:
               
524-828
               

               
Cow position:
               
chr28:10620049-10619740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 208
               

               
Conread position:
               
526-808
               

               
Cow position:
               
chr28:26006522-26006808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
526-828
               

               
Cow position:
               
chr28:8722384-8722097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
142, 70
               

               
Conread position:
               
554-828
               

               
Cow position:
               
chr28:2990877-2990604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
597-809
               

               
Cow position:
               
chr28:7791104-7790889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
675-807
               

               
Cow position:
               
chr28:2925129-2925263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
19-612
               

               
Cow position:
               
chr29:30696987-30696403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
28-485
               

               
Cow position:
               
chr29:21545043-21544573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
29-634
               

               
Cow position:
               
chr29:27263954-27263359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
30-468
               

               
Cow position:
               
chr29:35195350-35195799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
31-463
               

               
Cow position:
               
chr29:10849482-10849054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
31-619
               

               
Cow position:
               
chr29:15287965-15288570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 68
               

               
Conread position:
               
32-455
               

               
Cow position:
               
chr29:34753760-34753324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
39-556
               

               
Cow position:
               
chr29:8659808-8660327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 29
               

               
Conread position:
               
41-817
               

               
Cow position:
               
chr29:102568-103349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
96-423
               

               
Cow position:
               
chr29:27600251-27600575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 5
               

               
Conread position:
               
106-403
               

               
Cow position:
               
chr29:45465758-45465463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 10
               

               
Conread position:
               
300-828
               

               
Cow position:
               
chr29:2751566-2751053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
536-808
               

               
Cow position:
               
chr29:34753217-34752944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
651-808
               

               
Cow position:
               
chr29:45465207-45465051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
12-587
               

               
Cow position:
               
chr8:51861164-51860592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
20-544
               

               
Cow position:
               
chr8:54825628-54825097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
29-362
               

               
Cow position:
               
chr8:24421960-24421615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chr8:1584300-1584726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
29-468
               

               
Cow position:
               
chr8:39952314-39951859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
29-518
               

               
Cow position:
               
chr8:23215636-23216139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
29-636
               

               
Cow position:
               
chr8:45318254-45317655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
30-345
               

               
Cow position:
               
chr8:58187442-58187141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
30-423
               

               
Cow position:
               
chr8:38609199-38608790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
30-454
               

               
Cow position:
               
chr8:42163746-42163329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
30-501
               

               
Cow position:
               
chr8:21204518-21204991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-531
               

               
Cow position:
               
chr8:9541945-9541469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 26
               

               
Conread position:
               
30-594
               

               
Cow position:
               
chr8:30416765-30417321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
30-619
               

               
Cow position:
               
chr8:27092869-27092270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
30-619
               

               
Cow position:
               
chr8:47669304-47669884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr8:11756471-11757274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chr8:11971802-11970995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
827
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
31-364
               

               
Cow position:
               
chr8:45162774-45162440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
31-444
               

               
Cow position:
               
chr8:27985184-27984759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
41-667
               

               
Cow position:
               
chr8:50751462-50752115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
43-451
               

               
Cow position:
               
chr8:44691916-44692332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
64-243
               

               
Cow position:
               
chr8:25540041-25540220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
74-551
               

               
Cow position:
               
chr8:61037436-61036956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
91-468
               

               
Cow position:
               
chr8:40573069-40572690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
122-423
               

               
Cow position:
               
chr8:12545464-12545166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr8:19228796-19229096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 173
               

               
Conread position:
               
175-460
               

               
Cow position:
               
chr8:53423925-53424215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
91, 158
               

               
Conread position:
               
199-619
               

               
Cow position:
               
chr8:45188076-45188492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
251-469
               

               
Cow position:
               
chr8:42383691-42383468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
297-828
               

               
Cow position:
               
chr8:25540989-25541539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 181
               

               
Conread position:
               
298-618
               

               
Cow position:
               
chr8:46218976-46218655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 179
               

               
Conread position:
               
371-806
               

               
Cow position:
               
chr8:45162395-45161972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 40
               

               
Conread position:
               
519-826
               

               
Cow position:
               
chr8:38608686-38608388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
198, 77
               

               
Conread position:
               
526-807
               

               
Cow position:
               
chr8:44692428-44692720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
72, 207
               

               
Conread position:
               
527-793
               

               
Cow position:
               
chr8:44121128-44121391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
539-733
               

               
Cow position:
               
chr8:9541153-9540957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
646-808
               

               
Cow position:
               
chr8:24421401-24421238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
70, 81
               

               
Conread position:
               
657-806
               

               
Cow position:
               
chr8:26623031-26623180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
18-446
               

               
Cow position:
               
chr9:3154567-3155014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 86
               

               
Conread position:
               
26-444
               

               
Cow position:
               
chr9:8970546-8970128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
28-302
               

               
Cow position:
               
chr9:54113147-54113430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
28-388
               

               
Cow position:
               
chr9:31019299-31019668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
28-606
               

               
Cow position:
               
chr9:652617-652041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr9:3144518-3144234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr9:3149113-3148829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
29-463
               

               
Cow position:
               
chr9:10313910-10314351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
29-467
               

               
Cow position:
               
chr9:15071062-15071512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
30-441
               

               
Cow position:
               
chr9:28627866-28627446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
30-444
               

               
Cow position:
               
chr9:29358492-29358920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
30-448
               

               
Cow position:
               
chr9:44794067-44794517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
31-761
               

               
Cow position:
               
chr9:13218630-13219400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
32-246
               

               
Cow position:
               
chr9:11320941-11321159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
32-645
               

               
Cow position:
               
chr9:833000-832380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
32-785
               

               
Cow position:
               
chr9:2006644-2005864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
805
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
32-828
               

               
Cow position:
               
chr9:3801948-3802738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
33-246
               

               
Cow position:
               
chr9:64006593-64006812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
48-409
               

               
Cow position:
               
chr9:54359363-54359726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
60-364
               

               
Cow position:
               
chr9:3585299-3585609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
69, 41
               

               
Conread position:
               
123-468
               

               
Cow position:
               
chr9:2112449-2112804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 115
               

               
Conread position:
               
168-451
               

               
Cow position:
               
chr9:56863517-56863231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
168-808
               

               
Cow position:
               
chr9:18001825-18002453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
185-468
               

               
Cow position:
               
chr9:34109199-34108906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
535-808
               

               
Cow position:
               
chr9:11321418-11321687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
10-619
               

               
Cow position:
               
chrX:22776415-22777009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
19-389
               

               
Cow position:
               
chrX:29784904-29784528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
165, 82
               

               
Conread position:
               
20-444
               

               
Cow position:
               
chrX:21057876-21058312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
21-635
               

               
Cow position:
               
chrX:6911369-6910754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
23-444
               

               
Cow position:
               
chrX:21599069-21599502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
26-442
               

               
Cow position:
               
chrX:30047716-30047292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
26-463
               

               
Cow position:
               
chrX:21291075-21290627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
28-504
               

               
Cow position:
               
chrX:26898245-26897780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
144, 31
               

               
Conread position:
               
29-328
               

               
Cow position:
               
chrX:20802472-20802776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chrX:30991552-30991127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
142, 72
               

               
Conread position:
               
29-444
               

               
Cow position:
               
chrX:35016201-35016629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
29-445
               

               
Cow position:
               
chrX:24123694-24123267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
29-451
               

               
Cow position:
               
chrX:39716207-39716648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
29-456
               

               
Cow position:
               
chrX:13008220-13007783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
30-567
               

               
Cow position:
               
chrX:31033791-31034335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
30-619
               

               
Cow position:
               
chrX:24137994-24137406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
30-638
               

               
Cow position:
               
chrX:11670098-11669478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
30-648
               

               
Cow position:
               
chrX:25331476-25332090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 49
               

               
Conread position:
               
30-708
               

               
Cow position:
               
chrX:42451128-42450445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
30-828
               

               
Cow position:
               
chrX:21791034-21791833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 26
               

               
Conread position:
               
31-444
               

               
Cow position:
               
chrX:21634165-21633737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 75
               

               
Conread position:
               
31-451
               

               
Cow position:
               
chrX:26503591-26504024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
31-619
               

               
Cow position:
               
chrX:8907463-8908034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
31-828
               

               
Cow position:
               
chrX:35015217-35015997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
815
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 39
               

               
Conread position:
               
32-387
               

               
Cow position:
               
chrX:17672516-17672149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
32-454
               

               
Cow position:
               
chrX:30372017-30371594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
32-672
               

               
Cow position:
               
chrX:22133615-22132960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
33-828
               

               
Cow position:
               
chrX:6362472-6361644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
838
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
48-468
               

               
Cow position:
               
chrX:5836262-5835827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
58-643
               

               
Cow position:
               
chrX:26837659-26838237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 47
               

               
Conread position:
               
58-670
               

               
Cow position:
               
chrX:35956256-35955623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
118-456
               

               
Cow position:
               
chrX:26633489-26633137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 198
               

               
Conread position:
               
161-828
               

               
Cow position:
               
chrX:6284741-6284074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 66
               

               
Conread position:
               
174-645
               

               
Cow position:
               
chrX:30144980-30144497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
76, 101
               

               
Conread position:
               
208-808
               

               
Cow position:
               
chrX:28552520-28553125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 167
               

               
Conread position:
               
208-826
               

               
Cow position:
               
chrX:21585520-21586139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 277
               

               
Conread position:
               
251-828
               

               
Cow position:
               
chrX:2537865-2537293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
382-587
               

               
Cow position:
               
chrX:17670480-17670266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 98
               

               
Conread position:
               
400-808
               

               
Cow position:
               
chrX:31371659-31372063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
440-828
               

               
Cow position:
               
chrX:25041688-25041304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
553-827
               

               
Cow position:
               
chrX:31034548-31034826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 116
               

               
Conread position:
               
622-815
               

               
Cow position:
               
chrX:16018205-16018012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 102
               

               
Conread position:
               
657-819
               

               
Cow position:
               
chrX:17670006-17669844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 15