Cow genome map
| Conread name: | Ss1.1-Utr2-C0001807_E13.5 |
| Conread position: | 52-260 |
| Cow position: | chr12:37373341-37373130 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 25 |
| Conread position: | 600-693 |
| Cow position: | chr12:37373705-37373610 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 674-780 |
| Cow position: | chr12:37373342-37373235 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 14-257 |
| Cow position: | chr13:44195323-44195567 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 20-244 |
| Cow position: | chr13:44195929-44196152 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 150, 114 |
| Conread position: | 20-780 |
| Cow position: | chr13:44194020-44194811 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 648 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 426 |
| Conread position: | 32-780 |
| Cow position: | chr13:44194688-44195470 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 46-235 |
| Cow position: | chr13:44193430-44193615 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 139, 17 |
| Conread position: | 203-483 |
| Cow position: | chr13:32827965-32827683 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 223 |
| Conread position: | 332-778 |
| Cow position: | chr13:44195597-44196065 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 317 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 5-481 |
| Cow position: | chr15:4864411-4863942 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 67-435 |
| Cow position: | chr15:4866545-4866195 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 146 |
| Conread position: | 120-485 |
| Cow position: | chr15:4864952-4864583 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 51 |
| Conread position: | 482-780 |
| Cow position: | chr15:4864562-4864257 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 20-126 |
| Cow position: | chr17:23841406-23841516 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 99-629 |
| Cow position: | chr17:23841522-23842059 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 17-168 |
| Cow position: | chr19:3085829-3085680 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 62 |
| Conread position: | 653-780 |
| Cow position: | chr19:3085814-3085687 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 111-400 |
| Cow position: | chr2:1338162-1338462 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 20-204 |
| Cow position: | chr21:16584642-16584457 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 164, 115 |
| Conread position: | 22-272 |
| Cow position: | chr21:16584017-16583765 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 27-414 |
| Cow position: | chr21:16586722-16586343 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 432-780 |
| Cow position: | chr21:16584889-16584502 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 280 |
| Conread position: | 484-758 |
| Cow position: | chr21:16586054-16585773 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 71-258 |
| Cow position: | chr23:1312329-1312138 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 64 |
| Conread position: | 128-489 |
| Cow position: | chr23:1313787-1313424 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 200 |
| Conread position: | 482-771 |
| Cow position: | chr23:1313407-1313120 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 64-406 |
| Cow position: | chr25:8605261-8605587 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 111, 208 |
| Conread position: | 291-646 |
| Cow position: | chr28:7785158-7785532 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 138 |
| Conread position: | 629-780 |
| Cow position: | chr28:7785811-7785965 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 47-424 |
| Cow position: | chr4:65214375-65214733 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 16 |
| Conread position: | 13-154 |
| Cow position: | chr5:50610673-50610531 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 124 |
| Conread position: | 373-773 |
| Cow position: | chr5:50608043-50608461 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 55 |
| Conread position: | 479-774 |
| Cow position: | chr5:50610851-50610530 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 216 |
| Conread position: | 20-458 |
| Cow position: | chr6:13099551-13099970 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 131, 23 |
| Conread position: | 624-778 |
| Cow position: | chr7:66050636-66050785 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 57 |