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Cow genome map

           
Conread name:
           
Ss1.1-mCP1-MI-P-CP1-nzc-p-10-0-UI.s1.3
        

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:79637782-79637565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:72134053-72134327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
1-625
               

               
Cow position:
               
chr1:89478201-89478826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
5-572
               

               
Cow position:
               
chr1:52322925-52323478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 115
               

               
Conread position:
               
6-271
               

               
Cow position:
               
chr1:42057745-42058007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
17-233
               

               
Cow position:
               
chr1:40906793-40907007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
53-393
               

               
Cow position:
               
chr1:87460350-87460018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 81
               

               
Conread position:
               
55-237
               

               
Cow position:
               
chr1:53363914-53364097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 119
               

               
Conread position:
               
55-277
               

               
Cow position:
               
chr1:72118266-72118489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
30, 119
               

               
Conread position:
               
59-224
               

               
Cow position:
               
chr1:77122350-77122185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
89, 115
               

               
Conread position:
               
64-329
               

               
Cow position:
               
chr1:27350212-27350467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
175, 42
               

               
Conread position:
               
74-266
               

               
Cow position:
               
chr1:44087517-44087325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
125, 98
               

               
Conread position:
               
275-463
               

               
Cow position:
               
chr1:72119199-72119385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
277-553
               

               
Cow position:
               
chr1:69288262-69287988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
193, 15
               

               
Conread position:
               
277-657
               

               
Cow position:
               
chr1:72134718-72135092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 16
               

               
Conread position:
               
279-487
               

               
Cow position:
               
chr1:31594245-31594452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
183, 31
               

               
Conread position:
               
279-526
               

               
Cow position:
               
chr1:82346752-82346497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 90
               

               
Conread position:
               
279-576
               

               
Cow position:
               
chr1:76704060-76703765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
279-584
               

               
Cow position:
               
chr1:69059724-69060026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
183, 90
               

               
Conread position:
               
279-639
               

               
Cow position:
               
chr1:25887846-25887490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
126, 91
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr1:42177079-42176737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
199, 68
               

               
Conread position:
               
279-655
               

               
Cow position:
               
chr1:82408622-82408245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
282-657
               

               
Cow position:
               
chr1:67903138-67902770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 55
               

               
Conread position:
               
286-464
               

               
Cow position:
               
chr1:88532813-88532643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
286-666
               

               
Cow position:
               
chr1:61732354-61732726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 31
               

               
Conread position:
               
302-648
               

               
Cow position:
               
chr1:29032583-29032918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
173, 68
               

               
Conread position:
               
303-655
               

               
Cow position:
               
chr1:54366465-54366125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
319-565
               

               
Cow position:
               
chr1:28802086-28801836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
350-565
               

               
Cow position:
               
chr1:89900335-89900111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
350-656
               

               
Cow position:
               
chr1:67285849-67286164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 177
               

               
Conread position:
               
350-716
               

               
Cow position:
               
chr1:40514140-40513777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 36
               

               
Conread position:
               
379-657
               

               
Cow position:
               
chr1:34688738-34689007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
166, 130
               

               
Conread position:
               
380-552
               

               
Cow position:
               
chr1:28722202-28722378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
380-564
               

               
Cow position:
               
chr1:59672472-59672658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr1:18406789-18406600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr1:38414220-38414409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr1:88634779-88634968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr1:101858579-101858390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-566
               

               
Cow position:
               
chr1:69536321-69536507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
380-605
               

               
Cow position:
               
chr1:45096985-45097215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-638
               

               
Cow position:
               
chr1:42289809-42290061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
380-652
               

               
Cow position:
               
chr1:62854430-62854152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
381-616
               

               
Cow position:
               
chr1:53364084-53364320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
390-565
               

               
Cow position:
               
chr1:52233685-52233507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 122
               

               
Conread position:
               
392-562
               

               
Cow position:
               
chr1:39543136-39543304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
145, 115
               

               
Conread position:
               
392-607
               

               
Cow position:
               
chr1:101149250-101149464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
392-643
               

               
Cow position:
               
chr1:33711460-33711722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
80, 102
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr1:55324131-55323864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr1:89740845-89740573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
83, 197
               

               
Conread position:
               
394-566
               

               
Cow position:
               
chr1:77122181-77122010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
394-640
               

               
Cow position:
               
chr1:87244204-87244457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
402-655
               

               
Cow position:
               
chr1:11863875-11863616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 119
               

               
Conread position:
               
403-639
               

               
Cow position:
               
chr1:23050048-23050281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
67, 116
               

               
Conread position:
               
433-656
               

               
Cow position:
               
chr1:37420541-37420317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
474-639
               

               
Cow position:
               
chr1:72119640-72119795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr10:54126655-54126841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr10:61296479-61296715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr10:38547028-38546824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
18-238
               

               
Cow position:
               
chr10:39780655-39780433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
17, 157
               

               
Conread position:
               
176-657
               

               
Cow position:
               
chr10:60488861-60489350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
275-646
               

               
Cow position:
               
chr10:14886535-14886174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 57
               

               
Conread position:
               
275-646
               

               
Cow position:
               
chr10:24299549-24299182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 96
               

               
Conread position:
               
279-559
               

               
Cow position:
               
chr10:49309853-49310131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
289-657
               

               
Cow position:
               
chr10:14951045-14951398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
173, 43
               

               
Conread position:
               
300-507
               

               
Cow position:
               
chr10:42682811-42683019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
306-498
               

               
Cow position:
               
chr10:42663629-42663820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
370-654
               

               
Cow position:
               
chr10:4499104-4499392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr10:29695651-29695929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
383-656
               

               
Cow position:
               
chr10:54126869-54127148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
384-657
               

               
Cow position:
               
chr10:46190795-46191067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
161, 66
               

               
Conread position:
               
392-632
               

               
Cow position:
               
chr10:62216032-62216281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
64, 121
               

               
Conread position:
               
392-632
               

               
Cow position:
               
chr10:62777773-62778016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr10:25497781-25498037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr10:29633410-29633165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr10:34685326-34685578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
392-651
               

               
Cow position:
               
chr10:42627881-42628155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
57, 135
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr10:61296714-61296982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
394-559
               

               
Cow position:
               
chr10:31523283-31523453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
403-666
               

               
Cow position:
               
chr10:34318822-34318570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
63, 113
               

               
Conread position:
               
436-655
               

               
Cow position:
               
chr10:14859450-14859661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr11:24676884-24677122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr11:7686129-7686401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
19-425
               

               
Cow position:
               
chr11:7393598-7393996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
112-529
               

               
Cow position:
               
chr11:7306744-7306336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 6
               

               
Conread position:
               
275-657
               

               
Cow position:
               
chr11:7686841-7687231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 80
               

               
Conread position:
               
279-464
               

               
Cow position:
               
chr11:11124412-11124594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
279-629
               

               
Cow position:
               
chr11:72017168-72017511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
173, 13
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr11:81853647-81853282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr11:44507135-44507490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
370, 23
               

               
Conread position:
               
284-656
               

               
Cow position:
               
chr11:65162575-65162218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
166, 16
               

               
Conread position:
               
299-557
               

               
Cow position:
               
chr11:25180066-25180311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
179, 98
               

               
Conread position:
               
300-476
               

               
Cow position:
               
chr11:7110911-7110738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
310-657
               

               
Cow position:
               
chr11:42428320-42428651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
156, 31
               

               
Conread position:
               
378-649
               

               
Cow position:
               
chr11:32682716-32682991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 157
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr11:34019961-34020229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-656
               

               
Cow position:
               
chr11:44496543-44496265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 134
               

               
Conread position:
               
381-648
               

               
Cow position:
               
chr11:72005093-72005351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
381-656
               

               
Cow position:
               
chr11:28062713-28063006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
382-656
               

               
Cow position:
               
chr11:7112493-7112774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
390-559
               

               
Cow position:
               
chr11:21466161-21466332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 120
               

               
Conread position:
               
392-614
               

               
Cow position:
               
chr11:75919611-75919838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr11:8888086-8887830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr11:9660318-9660074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 125
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr11:25526656-25526897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 122
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr11:30304336-30304587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
394-635
               

               
Cow position:
               
chr11:12352229-12351984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
394-657
               

               
Cow position:
               
chr11:9220959-9220697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 113
               

               
Conread position:
               
400-657
               

               
Cow position:
               
chr11:12092819-12093078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
402-639
               

               
Cow position:
               
chr11:56178986-56179220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
159, 107
               

               
Conread position:
               
425-656
               

               
Cow position:
               
chr11:7394214-7394442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
16-238
               

               
Cow position:
               
chr12:22120846-22121066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
16, 157
               

               
Conread position:
               
275-652
               

               
Cow position:
               
chr12:48404004-48404372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 34
               

               
Conread position:
               
275-657
               

               
Cow position:
               
chr12:2840358-2839982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
279-598
               

               
Cow position:
               
chr12:1867704-1868026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
183, 72
               

               
Conread position:
               
363-648
               

               
Cow position:
               
chr12:21058664-21058374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
25, 147
               

               
Conread position:
               
375-541
               

               
Cow position:
               
chr12:15954359-15954193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 139
               

               
Conread position:
               
377-633
               

               
Cow position:
               
chr12:32182872-32183125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
379-640
               

               
Cow position:
               
chr12:22331952-22332226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 138
               

               
Conread position:
               
392-638
               

               
Cow position:
               
chr12:45260995-45261245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr12:22121065-22121330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 128
               

               
Conread position:
               
398-568
               

               
Cow position:
               
chr12:8310397-8310570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 114
               

               
Conread position:
               
41-225
               

               
Cow position:
               
chr13:20543422-20543238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
220-657
               

               
Cow position:
               
chr13:48356281-48356717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
275-666
               

               
Cow position:
               
chr13:34768196-34767827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
173, 88
               

               
Conread position:
               
276-514
               

               
Cow position:
               
chr13:5282865-5283100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
289-564
               

               
Cow position:
               
chr13:47859350-47859631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
292-648
               

               
Cow position:
               
chr13:15081141-15080796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
159, 39
               

               
Conread position:
               
338-640
               

               
Cow position:
               
chr13:33279266-33278977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
350-657
               

               
Cow position:
               
chr13:20543275-20542978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
376-611
               

               
Cow position:
               
chr13:3276268-3276512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
379-552
               

               
Cow position:
               
chr13:13046691-13046516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
380-627
               

               
Cow position:
               
chr13:34692293-34692544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr13:34143526-34143273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
381-640
               

               
Cow position:
               
chr13:33825624-33825351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
6, 137
               

               
Conread position:
               
390-640
               

               
Cow position:
               
chr13:62328451-62328193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
392-559
               

               
Cow position:
               
chr13:34935979-34936150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
78, 122
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr13:2909310-2909058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 120
               

               
Conread position:
               
395-650
               

               
Cow position:
               
chr13:58716130-58716376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
397-645
               

               
Cow position:
               
chr13:31831746-31832001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
75, 115
               

               
Conread position:
               
404-639
               

               
Cow position:
               
chr13:34187554-34187318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
469-657
               

               
Cow position:
               
chr13:54283794-54283978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr14:45304869-45304640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr14:40338456-40338693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
22-266
               

               
Cow position:
               
chr14:22017356-22017587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
154-360
               

               
Cow position:
               
chr14:41771831-41772034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
81, 144
               

               
Conread position:
               
270-554
               

               
Cow position:
               
chr14:36184814-36184537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
196, 8
               

               
Conread position:
               
278-648
               

               
Cow position:
               
chr14:35928072-35928426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
171, 91
               

               
Conread position:
               
279-526
               

               
Cow position:
               
chr14:14310159-14309914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
124, 44
               

               
Conread position:
               
285-647
               

               
Cow position:
               
chr14:44579853-44580195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
180, 14
               

               
Conread position:
               
288-657
               

               
Cow position:
               
chr14:38145518-38145899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 193
               

               
Conread position:
               
299-657
               

               
Cow position:
               
chr14:44781014-44780646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
299-657
               

               
Cow position:
               
chr14:44783354-44782986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
331-552
               

               
Cow position:
               
chr14:23530462-23530246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
204, 59
               

               
Conread position:
               
350-638
               

               
Cow position:
               
chr14:44129908-44130189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr14:45767014-45767204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
380-566
               

               
Cow position:
               
chr14:13660985-13660795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
382-565
               

               
Cow position:
               
chr14:45712969-45712783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
383-657
               

               
Cow position:
               
chr14:45159829-45160123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 208
               

               
Conread position:
               
386-648
               

               
Cow position:
               
chr14:45304643-45304378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr14:47623597-47623773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
392-635
               

               
Cow position:
               
chr14:46083626-46083870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr14:23691220-23690964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-648
               

               
Cow position:
               
chr14:40338692-40338963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 106
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr14:46463793-46464066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 122
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr14:11467607-11467859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
395-640
               

               
Cow position:
               
chr14:44856410-44856163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 62
               

               
Conread position:
               
400-657
               

               
Cow position:
               
chr14:44551052-44551314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
78, 112
               

               
Conread position:
               
402-656
               

               
Cow position:
               
chr14:35388126-35387873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr15:24792832-24793047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
5-371
               

               
Cow position:
               
chr15:16591331-16590977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 169
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr15:38958361-38958180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 158
               

               
Conread position:
               
17-224
               

               
Cow position:
               
chr15:35649417-35649208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
15, 163
               

               
Conread position:
               
98-363
               

               
Cow position:
               
chr15:49675512-49675771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 82
               

               
Conread position:
               
146-276
               

               
Cow position:
               
chr15:36628281-36628152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
251-656
               

               
Cow position:
               
chr15:38958163-38957767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 11
               

               
Conread position:
               
275-498
               

               
Cow position:
               
chr15:27065161-27064940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
191, 95
               

               
Conread position:
               
275-655
               

               
Cow position:
               
chr15:36627725-36627345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 95
               

               
Conread position:
               
275-657
               

               
Cow position:
               
chr15:21816860-21816480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 93
               

               
Conread position:
               
279-552
               

               
Cow position:
               
chr15:40104345-40104618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 122
               

               
Conread position:
               
279-573
               

               
Cow position:
               
chr15:1236314-1236612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
191, 91
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr15:4631035-4630654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
182, 58
               

               
Conread position:
               
279-666
               

               
Cow position:
               
chr15:15266901-15266518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
279-692
               

               
Cow position:
               
chr15:323813-324225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
181, 90
               

               
Conread position:
               
280-657
               

               
Cow position:
               
chr15:10479798-10479430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
173, 90
               

               
Conread position:
               
281-456
               

               
Cow position:
               
chr15:684603-684776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
286-657
               

               
Cow position:
               
chr15:12613971-12614330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 45
               

               
Conread position:
               
291-559
               

               
Cow position:
               
chr15:12364300-12364565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 71
               

               
Conread position:
               
293-646
               

               
Cow position:
               
chr15:21447977-21448325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
173, 18
               

               
Conread position:
               
310-526
               

               
Cow position:
               
chr15:17683785-17683564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
160, 60
               

               
Conread position:
               
325-512
               

               
Cow position:
               
chr15:51799416-51799605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 45
               

               
Conread position:
               
357-497
               

               
Cow position:
               
chr15:16590891-16590753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
373-535
               

               
Cow position:
               
chr15:13520682-13520840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
375-649
               

               
Cow position:
               
chr15:32680581-32680303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
95, 140
               

               
Conread position:
               
379-657
               

               
Cow position:
               
chr15:52635145-52635427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
91, 75
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr15:6077744-6077933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr15:21960519-21960708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-614
               

               
Cow position:
               
chr15:6371845-6371605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr15:6651036-6650783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 143
               

               
Conread position:
               
386-645
               

               
Cow position:
               
chr15:53338044-53338310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
386-648
               

               
Cow position:
               
chr15:36641624-36641882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
389-634
               

               
Cow position:
               
chr15:4677513-4677758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 123
               

               
Conread position:
               
391-657
               

               
Cow position:
               
chr15:44827806-44828075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
79, 154
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr15:3038481-3038305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr15:25135444-25135268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr15:38195105-38195281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-611
               

               
Cow position:
               
chr15:32692539-32692761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 122
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr15:6278244-6277992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr15:36647937-36648177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-643
               

               
Cow position:
               
chr15:10788081-10787823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
392-648
               

               
Cow position:
               
chr15:6387302-6387043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 40
               

               
Conread position:
               
392-656
               

               
Cow position:
               
chr15:370683-370411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr15:14583614-14583338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr15:24793061-24793316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
76, 121
               

               
Conread position:
               
394-565
               

               
Cow position:
               
chr15:7895172-7895000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
394-640
               

               
Cow position:
               
chr15:4794694-4794945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
71, 118
               

               
Conread position:
               
395-657
               

               
Cow position:
               
chr15:8098476-8098746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 121
               

               
Conread position:
               
401-648
               

               
Cow position:
               
chr15:1763088-1763340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 121
               

               
Conread position:
               
402-657
               

               
Cow position:
               
chr15:35649194-35648946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
67, 55
               

               
Conread position:
               
403-520
               

               
Cow position:
               
chr15:49675774-49675893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
419-650
               

               
Cow position:
               
chr15:7927657-7927885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 91
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr16:25152111-25152638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr16:29031353-29031560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr16:15368707-15368915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
17-363
               

               
Cow position:
               
chr16:16687199-16687537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
17-656
               

               
Cow position:
               
chr16:32934419-32935067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 162
               

               
Conread position:
               
26-238
               

               
Cow position:
               
chr16:49258150-49257945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
54-198
               

               
Cow position:
               
chr16:5887061-5887206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
148-310
               

               
Cow position:
               
chr16:42051887-42051728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
156-391
               

               
Cow position:
               
chr16:49237059-49236826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
178-651
               

               
Cow position:
               
chr16:44673449-44673915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
275-627
               

               
Cow position:
               
chr16:5888000-5888355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
275-639
               

               
Cow position:
               
chr16:36233062-36232697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 55
               

               
Conread position:
               
275-660
               

               
Cow position:
               
chr16:49955972-49955602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
279-433
               

               
Cow position:
               
chr16:31717417-31717265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
279-549
               

               
Cow position:
               
chr16:14422276-14422548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
169, 65
               

               
Conread position:
               
280-650
               

               
Cow position:
               
chr16:29981815-29982180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 32
               

               
Conread position:
               
281-657
               

               
Cow position:
               
chr16:334542-334905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
185, 55
               

               
Conread position:
               
313-576
               

               
Cow position:
               
chr16:40887673-40887422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
231, 23
               

               
Conread position:
               
344-571
               

               
Cow position:
               
chr16:13650792-13650562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr16:11051834-11052022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
380-614
               

               
Cow position:
               
chr16:39818274-39818513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-617
               

               
Cow position:
               
chr16:19714196-19713958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr16:29676657-29676388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr16:36282062-36282313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
384-657
               

               
Cow position:
               
chr16:29031560-29031833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
15, 129
               

               
Conread position:
               
392-551
               

               
Cow position:
               
chr16:28234000-28233849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
153, 86
               

               
Conread position:
               
392-559
               

               
Cow position:
               
chr16:15368937-15369102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
151, 117
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr16:20255646-20255390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-656
               

               
Cow position:
               
chr16:49257946-49257679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 120
               

               
Conread position:
               
402-657
               

               
Cow position:
               
chr16:18688468-18688204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
404-657
               

               
Cow position:
               
chr16:25084284-25084538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 111
               

               
Conread position:
               
405-657
               

               
Cow position:
               
chr16:49236450-49236196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
406-657
               

               
Cow position:
               
chr16:16687536-16687786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr17:3694797-3694627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
19-370
               

               
Cow position:
               
chr17:14327308-14326959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
212-645
               

               
Cow position:
               
chr17:3694628-3694192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
254-642
               

               
Cow position:
               
chr17:15416942-15417326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 116
               

               
Conread position:
               
274-584
               

               
Cow position:
               
chr17:4294355-4294652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
280, 95
               

               
Conread position:
               
276-639
               

               
Cow position:
               
chr17:153340-152983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 94
               

               
Conread position:
               
276-648
               

               
Cow position:
               
chr17:31200957-31200586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
279-571
               

               
Cow position:
               
chr17:2587441-2587734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
279-649
               

               
Cow position:
               
chr17:18302647-18302279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
161, 91
               

               
Conread position:
               
289-657
               

               
Cow position:
               
chr17:4080773-4081142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 63
               

               
Conread position:
               
296-657
               

               
Cow position:
               
chr17:42263696-42264047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
170, 84
               

               
Conread position:
               
322-559
               

               
Cow position:
               
chr17:43987647-43987885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 197
               

               
Conread position:
               
332-655
               

               
Cow position:
               
chr17:20400851-20401164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
353-648
               

               
Cow position:
               
chr17:12671133-12670855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
355-604
               

               
Cow position:
               
chr17:14326278-14326035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
362-640
               

               
Cow position:
               
chr17:2286588-2286870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr17:55436-55255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
380-632
               

               
Cow position:
               
chr17:455640-455379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-652
               

               
Cow position:
               
chr17:35591466-35591734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
163, 127
               

               
Conread position:
               
381-552
               

               
Cow position:
               
chr17:20024239-20024411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
82, 128
               

               
Conread position:
               
381-629
               

               
Cow position:
               
chr17:18186983-18186744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 6
               

               
Conread position:
               
389-607
               

               
Cow position:
               
chr17:15370321-15370533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 19
               

               
Conread position:
               
390-568
               

               
Cow position:
               
chr17:22430228-22430047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 122
               

               
Conread position:
               
390-640
               

               
Cow position:
               
chr17:27345047-27345301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 122
               

               
Conread position:
               
390-640
               

               
Cow position:
               
chr17:44853671-44853430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 104
               

               
Conread position:
               
392-552
               

               
Cow position:
               
chr17:20088640-20088482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 95
               

               
Conread position:
               
392-556
               

               
Cow position:
               
chr17:16889393-16889557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
392-614
               

               
Cow position:
               
chr17:1284522-1284293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 130
               

               
Conread position:
               
268-565
               

               
Cow position:
               
chr18:18896875-18897177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
5, 121
               

               
Conread position:
               
275-657
               

               
Cow position:
               
chr18:43200115-43200492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 94
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chr18:16876590-16876926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
199, 31
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr18:45958025-45958401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 90
               

               
Conread position:
               
280-504
               

               
Cow position:
               
chr18:42072771-42072546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
195, 49
               

               
Conread position:
               
286-658
               

               
Cow position:
               
chr18:29762815-29763190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
172, 79
               

               
Conread position:
               
289-517
               

               
Cow position:
               
chr18:2887669-2887445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr18:51257432-51257621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr18:32293214-32293478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
382-640
               

               
Cow position:
               
chr18:39748025-39748285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 130
               

               
Conread position:
               
385-643
               

               
Cow position:
               
chr18:35334926-35335189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 127
               

               
Conread position:
               
387-656
               

               
Cow position:
               
chr18:54024935-54024658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
392-638
               

               
Cow position:
               
chr18:43147476-43147225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr18:30198109-30198364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr18:33358311-33358566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr18:29236204-29236477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr18:33335301-33335573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
398-558
               

               
Cow position:
               
chr18:54001909-54002072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
402-631
               

               
Cow position:
               
chr18:16660563-16660331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
73, 112
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr19:39687223-39687458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
1-656
               

               
Cow position:
               
chr19:32224363-32223709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
275-477
               

               
Cow position:
               
chr19:8229991-8229789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
193, 95
               

               
Conread position:
               
275-549
               

               
Cow position:
               
chr19:20124988-20125252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
263, 70
               

               
Conread position:
               
303-656
               

               
Cow position:
               
chr19:562353-562002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
172, 65
               

               
Conread position:
               
322-559
               

               
Cow position:
               
chr19:7341412-7341649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
325-657
               

               
Cow position:
               
chr19:6552786-6553110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
335-666
               

               
Cow position:
               
chr19:36476747-36477071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
367-552
               

               
Cow position:
               
chr19:32238418-32238230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
380-548
               

               
Cow position:
               
chr19:24748375-24748548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr19:801431-801696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr19:4252921-4252652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
390-640
               

               
Cow position:
               
chr19:416104-416354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 47
               

               
Conread position:
               
390-640
               

               
Cow position:
               
chr19:29209012-29209272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 60
               

               
Conread position:
               
392-656
               

               
Cow position:
               
chr19:33860-34124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
78, 122
               

               
Conread position:
               
394-633
               

               
Cow position:
               
chr19:27053381-27053145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
395-657
               

               
Cow position:
               
chr19:76799-76530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 117
               

               
Conread position:
               
403-657
               

               
Cow position:
               
chr19:35376019-35376269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
405-640
               

               
Cow position:
               
chr19:39546126-39546363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
134, 102
               

               
Conread position:
               
1-664
               

               
Cow position:
               
chr2:25243875-25244527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr2:32435631-32435368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr2:7900708-7900914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr2:15579313-15579078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr2:6877164-6877394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
22-657
               

               
Cow position:
               
chr2:783198-782584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
29-216
               

               
Cow position:
               
chr2:51306185-51306002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 79
               

               
Conread position:
               
53-272
               

               
Cow position:
               
chr2:24394220-24393998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
111, 122
               

               
Conread position:
               
54-211
               

               
Cow position:
               
chr2:203396-203241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
274-657
               

               
Cow position:
               
chr2:7210201-7210575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
183, 91
               

               
Conread position:
               
275-450
               

               
Cow position:
               
chr2:32434916-32434747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
275-647
               

               
Cow position:
               
chr2:54650014-54649664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
196, 95
               

               
Conread position:
               
275-657
               

               
Cow position:
               
chr2:85069472-85069088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 67
               

               
Conread position:
               
277-654
               

               
Cow position:
               
chr2:32388329-32388710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 88
               

               
Conread position:
               
279-463
               

               
Cow position:
               
chr2:74392733-74392551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
279-490
               

               
Cow position:
               
chr2:769582-769372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
281-576
               

               
Cow position:
               
chr2:73190637-73190931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
197, 89
               

               
Conread position:
               
281-655
               

               
Cow position:
               
chr2:20904335-20903980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
197, 80
               

               
Conread position:
               
310-657
               

               
Cow position:
               
chr2:63293763-63293421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
162, 60
               

               
Conread position:
               
313-565
               

               
Cow position:
               
chr2:8777624-8777874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
151, 57
               

               
Conread position:
               
319-648
               

               
Cow position:
               
chr2:3729561-3729879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
148, 51
               

               
Conread position:
               
352-565
               

               
Cow position:
               
chr2:46945392-46945610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 26
               

               
Conread position:
               
368-552
               

               
Cow position:
               
chr2:40244730-40244917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
372-656
               

               
Cow position:
               
chr2:202798-202507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 138
               

               
Conread position:
               
374-654
               

               
Cow position:
               
chr2:36032198-36031915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr2:44166442-44166258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
380-657
               

               
Cow position:
               
chr2:75250664-75250918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
381-657
               

               
Cow position:
               
chr2:7900930-7901211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
74, 134
               

               
Conread position:
               
386-655
               

               
Cow position:
               
chr2:16288123-16288398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
8, 130
               

               
Conread position:
               
387-657
               

               
Cow position:
               
chr2:47604924-47604649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
389-678
               

               
Cow position:
               
chr2:26655380-26655105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
72, 84
               

               
Conread position:
               
390-614
               

               
Cow position:
               
chr2:2102563-2102335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 124
               

               
Conread position:
               
391-502
               

               
Cow position:
               
chr2:28622192-28622081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr2:2363047-2363302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr2:5481740-5481486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-652
               

               
Cow position:
               
chr2:14560050-14560319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
78, 123
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr2:1673762-1673502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr2:32654224-32654498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 122
               

               
Conread position:
               
394-687
               

               
Cow position:
               
chr2:41148951-41149233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
400-657
               

               
Cow position:
               
chr2:6879068-6879325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
403-657
               

               
Cow position:
               
chr2:32459122-32458865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
404-657
               

               
Cow position:
               
chr2:6959637-6959895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 110
               

               
Conread position:
               
406-657
               

               
Cow position:
               
chr2:6877397-6877640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr20:18316413-18316196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
17-645
               

               
Cow position:
               
chr20:28592761-28593388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
275-657
               

               
Cow position:
               
chr20:9954972-9954588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 94
               

               
Conread position:
               
279-517
               

               
Cow position:
               
chr20:35974562-35974328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 46
               

               
Conread position:
               
279-645
               

               
Cow position:
               
chr20:22718369-22718022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
266, 13
               

               
Conread position:
               
350-565
               

               
Cow position:
               
chr20:24613938-24614156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
380-564
               

               
Cow position:
               
chr20:19006221-19006029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr20:3032370-3032560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
380-614
               

               
Cow position:
               
chr20:3252746-3252507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr20:8314033-8313768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
384-657
               

               
Cow position:
               
chr20:11276896-11276615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 136
               

               
Conread position:
               
390-649
               

               
Cow position:
               
chr20:15064143-15064406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 125
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr20:4800217-4800041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr20:10103149-10102883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
156, 123
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chr21:28873732-28874171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
16-583
               

               
Cow position:
               
chr21:18820957-18820393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 218
               

               
Conread position:
               
17-211
               

               
Cow position:
               
chr21:23809053-23809246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
18-655
               

               
Cow position:
               
chr21:358156-358801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 168
               

               
Conread position:
               
279-565
               

               
Cow position:
               
chr21:36713831-36714104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
279-568
               

               
Cow position:
               
chr21:26617214-26616938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
281-657
               

               
Cow position:
               
chr21:35089105-35089481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
185, 50
               

               
Conread position:
               
286-576
               

               
Cow position:
               
chr21:33754718-33754997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
258, 50
               

               
Conread position:
               
307-571
               

               
Cow position:
               
chr21:25286039-25286309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
335-565
               

               
Cow position:
               
chr21:46908621-46908393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
368-552
               

               
Cow position:
               
chr21:4076363-4076550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 144
               

               
Conread position:
               
375-716
               

               
Cow position:
               
chr21:4590469-4590124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 5
               

               
Conread position:
               
380-552
               

               
Cow position:
               
chr21:3614825-3615003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
380-566
               

               
Cow position:
               
chr21:34292315-34292501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
380-637
               

               
Cow position:
               
chr21:4455597-4455848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
380-643
               

               
Cow position:
               
chr21:2717154-2716885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 118
               

               
Conread position:
               
389-645
               

               
Cow position:
               
chr21:4223153-4222909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 123
               

               
Conread position:
               
390-559
               

               
Cow position:
               
chr21:23809283-23809455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
390-640
               

               
Cow position:
               
chr21:34259688-34259431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 122
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr21:13124454-13124276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr21:35595906-35596162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr21:47939006-47939260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 102
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr21:2542362-2542094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 122
               

               
Conread position:
               
400-657
               

               
Cow position:
               
chr21:2884212-2883956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 112
               

               
Conread position:
               
428-664
               

               
Cow position:
               
chr21:41952730-41952967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
434-649
               

               
Cow position:
               
chr21:4183082-4183312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 158
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr22:17072970-17073142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr22:1294380-1294152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
17-187
               

               
Cow position:
               
chr22:45880968-45880799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
192-478
               

               
Cow position:
               
chr22:34695747-34696027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 185
               

               
Conread position:
               
279-576
               

               
Cow position:
               
chr22:36272743-36273040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 52
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr22:7276756-7277125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 91
               

               
Conread position:
               
286-573
               

               
Cow position:
               
chr22:36266637-36266926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
178, 79
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr22:27334721-27334927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
186, 10
               

               
Conread position:
               
299-576
               

               
Cow position:
               
chr22:308997-309269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
165, 59
               

               
Conread position:
               
299-658
               

               
Cow position:
               
chr22:33350430-33350773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
336-555
               

               
Cow position:
               
chr22:1624367-1624572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
377-632
               

               
Cow position:
               
chr22:39882832-39882575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
380-568
               

               
Cow position:
               
chr22:1318759-1318948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
383-640
               

               
Cow position:
               
chr22:1294165-1293904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
386-656
               

               
Cow position:
               
chr22:1046725-1046989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
387-558
               

               
Cow position:
               
chr22:44353808-44353634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
390-648
               

               
Cow position:
               
chr22:3307379-3307116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
392-627
               

               
Cow position:
               
chr22:42770915-42771139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr22:1285592-1285326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
407-648
               

               
Cow position:
               
chr22:45880755-45880520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr23:22880602-22880332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 169
               

               
Conread position:
               
275-543
               

               
Cow position:
               
chr23:22879935-22879667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
195, 95
               

               
Conread position:
               
298-657
               

               
Cow position:
               
chr23:16617581-16617231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 68
               

               
Conread position:
               
304-648
               

               
Cow position:
               
chr23:19333149-19332802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
332-646
               

               
Cow position:
               
chr23:16482261-16481958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
368-640
               

               
Cow position:
               
chr23:31595850-31595574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
380-614
               

               
Cow position:
               
chr23:3012970-3013210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
380-632
               

               
Cow position:
               
chr23:2045365-2045629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
380-642
               

               
Cow position:
               
chr23:2525111-2524856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
392-552
               

               
Cow position:
               
chr23:810472-810634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 108
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr23:5875405-5875231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 102
               

               
Conread position:
               
392-645
               

               
Cow position:
               
chr23:989284-989027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
394-648
               

               
Cow position:
               
chr23:4509444-4509702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
402-657
               

               
Cow position:
               
chr23:1025699-1025444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
71, 98
               

               
Conread position:
               
20-243
               

               
Cow position:
               
chr24:16650097-16649876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
24-274
               

               
Cow position:
               
chr24:12290146-12289895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
8, 14
               

               
Conread position:
               
84-274
               

               
Cow position:
               
chr24:35992178-35991989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
153, 10
               

               
Conread position:
               
249-573
               

               
Cow position:
               
chr24:33432368-33432680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
272-657
               

               
Cow position:
               
chr24:32330658-32331037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
194, 27
               

               
Conread position:
               
277-657
               

               
Cow position:
               
chr24:12289405-12289027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 93
               

               
Conread position:
               
278-648
               

               
Cow position:
               
chr24:39677755-39678126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
279-604
               

               
Cow position:
               
chr24:36706947-36707269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 50
               

               
Conread position:
               
281-525
               

               
Cow position:
               
chr24:14283258-14283018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
150, 88
               

               
Conread position:
               
281-657
               

               
Cow position:
               
chr24:35842261-35841911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
45, 56
               

               
Conread position:
               
286-656
               

               
Cow position:
               
chr24:38635074-38635438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 45
               

               
Conread position:
               
300-657
               

               
Cow position:
               
chr24:1446916-1447271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
322-657
               

               
Cow position:
               
chr24:32126124-32125803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
350-655
               

               
Cow position:
               
chr24:16649931-16649622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 154
               

               
Conread position:
               
379-657
               

               
Cow position:
               
chr24:15392894-15392605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
93, 134
               

               
Conread position:
               
380-648
               

               
Cow position:
               
chr24:37301632-37301371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
388-657
               

               
Cow position:
               
chr24:6335114-6335389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
390-559
               

               
Cow position:
               
chr24:6083397-6083564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
147, 117
               

               
Conread position:
               
392-559
               

               
Cow position:
               
chr24:36560808-36560641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 42
               

               
Conread position:
               
392-646
               

               
Cow position:
               
chr24:12236481-12236741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
392-652
               

               
Cow position:
               
chr24:6057108-6057365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 120
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr24:12798328-12798059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr24:37216148-37216418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
394-640
               

               
Cow position:
               
chr24:14583545-14583793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
69, 116
               

               
Conread position:
               
406-640
               

               
Cow position:
               
chr24:17314873-17314641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr25:18092051-18092323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
4-238
               

               
Cow position:
               
chr25:18172472-18172701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr25:11934276-11933885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
169, 30
               

               
Conread position:
               
280-657
               

               
Cow position:
               
chr25:23346418-23346043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 90
               

               
Conread position:
               
319-609
               

               
Cow position:
               
chr25:18276532-18276235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 196
               

               
Conread position:
               
342-657
               

               
Cow position:
               
chr25:18092353-18092671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
380-645
               

               
Cow position:
               
chr25:17469316-17469037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 138
               

               
Conread position:
               
392-552
               

               
Cow position:
               
chr25:18411854-18411703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
145, 73
               

               
Conread position:
               
392-612
               

               
Cow position:
               
chr25:18172700-18172933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 131
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr25:11375947-11375695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
394-655
               

               
Cow position:
               
chr25:18302162-18302420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
437-648
               

               
Cow position:
               
chr25:36239659-36239867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
5-395
               

               
Cow position:
               
chr26:20032179-20032562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
17-425
               

               
Cow position:
               
chr26:20300081-20299676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 171
               

               
Conread position:
               
192-648
               

               
Cow position:
               
chr26:9851434-9850984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
192-648
               

               
Cow position:
               
chr26:9854898-9854448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
237-648
               

               
Cow position:
               
chr26:6601234-6601636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
285-657
               

               
Cow position:
               
chr26:12664929-12665299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 84
               

               
Conread position:
               
310-631
               

               
Cow position:
               
chr26:16903968-16904280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
160, 87
               

               
Conread position:
               
382-650
               

               
Cow position:
               
chr26:28424541-28424270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
86, 129
               

               
Conread position:
               
392-656
               

               
Cow position:
               
chr26:34012424-34012687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
83, 118
               

               
Conread position:
               
394-655
               

               
Cow position:
               
chr26:9846732-9846468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
21-160
               

               
Cow position:
               
chr27:25116419-25116559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr27:27198607-27198232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
85, 167
               

               
Conread position:
               
299-648
               

               
Cow position:
               
chr27:25999795-25999451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
246, 37
               

               
Conread position:
               
325-566
               

               
Cow position:
               
chr27:3997108-3996864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr27:16438679-16438943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
385-657
               

               
Cow position:
               
chr27:25116586-25116859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
86, 130
               

               
Conread position:
               
386-657
               

               
Cow position:
               
chr27:26556650-26556369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
389-643
               

               
Cow position:
               
chr27:27051032-27051276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
392-614
               

               
Cow position:
               
chr27:25003154-25002937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 102
               

               
Conread position:
               
421-648
               

               
Cow position:
               
chr27:5985728-5985495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr28:21358169-21358404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr28:26006620-26006814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
17-238
               

               
Cow position:
               
chr28:5811872-5812095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
17-238
               

               
Cow position:
               
chr28:10619937-10619715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 135
               

               
Conread position:
               
31-204
               

               
Cow position:
               
chr28:25784697-25784869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 143
               

               
Conread position:
               
34-216
               

               
Cow position:
               
chr28:2990784-2990602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
168, 144
               

               
Conread position:
               
41-196
               

               
Cow position:
               
chr28:17314148-17314301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
59-194
               

               
Cow position:
               
chr28:2925128-2925263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
83, 115
               

               
Conread position:
               
264-511
               

               
Cow position:
               
chr28:2925296-2925534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 36
               

               
Conread position:
               
275-614
               

               
Cow position:
               
chr28:25785192-25785508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
270, 61
               

               
Conread position:
               
277-648
               

               
Cow position:
               
chr28:26007323-26007676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 55
               

               
Conread position:
               
279-522
               

               
Cow position:
               
chr28:6658052-6657813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
184, 52
               

               
Conread position:
               
279-666
               

               
Cow position:
               
chr28:22827340-22827722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 27
               

               
Conread position:
               
285-476
               

               
Cow position:
               
chr28:22812180-22812362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
297-573
               

               
Cow position:
               
chr28:13721256-13721535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
178, 68
               

               
Conread position:
               
303-565
               

               
Cow position:
               
chr28:10464541-10464278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
162, 48
               

               
Conread position:
               
317-564
               

               
Cow position:
               
chr28:8044179-8043943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
332-656
               

               
Cow position:
               
chr28:34648280-34648592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
386-648
               

               
Cow position:
               
chr28:8722081-8721804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 249
               

               
Conread position:
               
386-657
               

               
Cow position:
               
chr28:2990588-2990308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
387-648
               

               
Cow position:
               
chr28:10619725-10619457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
390-565
               

               
Cow position:
               
chr28:15681300-15681478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
80, 122
               

               
Conread position:
               
391-655
               

               
Cow position:
               
chr28:7790847-7790585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
152, 122
               

               
Conread position:
               
392-514
               

               
Cow position:
               
chr28:9157025-9156898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
392-629
               

               
Cow position:
               
chr28:4382002-4381752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 155
               

               
Conread position:
               
392-639
               

               
Cow position:
               
chr28:5812094-5812344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr28:21358403-21358669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
82, 120
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr28:21325172-21325444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
82, 122
               

               
Conread position:
               
398-687
               

               
Cow position:
               
chr28:5796212-5796506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 118
               

               
Conread position:
               
404-655
               

               
Cow position:
               
chr28:7816643-7816894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 96
               

               
Conread position:
               
4-211
               

               
Cow position:
               
chr29:45465240-45465035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
14, 126
               

               
Conread position:
               
17-209
               

               
Cow position:
               
chr29:103166-103355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
17-265
               

               
Cow position:
               
chr29:34753122-34752873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
93-211
               

               
Cow position:
               
chr29:5183524-5183640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
275-651
               

               
Cow position:
               
chr29:45464537-45464163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 94
               

               
Conread position:
               
279-658
               

               
Cow position:
               
chr29:30810804-30811168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
257, 89
               

               
Conread position:
               
295-631
               

               
Cow position:
               
chr29:1714381-1714711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
161, 75
               

               
Conread position:
               
305-640
               

               
Cow position:
               
chr29:32640075-32640401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
173, 52
               

               
Conread position:
               
310-509
               

               
Cow position:
               
chr29:6470777-6470977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
153, 60
               

               
Conread position:
               
335-578
               

               
Cow position:
               
chr29:34752373-34752133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
336-646
               

               
Cow position:
               
chr29:103882-104189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
363-648
               

               
Cow position:
               
chr29:11048613-11048909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
30, 152
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr29:34622712-34622527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
380-657
               

               
Cow position:
               
chr29:21432013-21431725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
391-525
               

               
Cow position:
               
chr29:6874507-6874369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
82, 135
               

               
Conread position:
               
392-610
               

               
Cow position:
               
chr29:22318593-22318371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 120
               

               
Conread position:
               
392-629
               

               
Cow position:
               
chr29:35196061-35196295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr29:10848742-10848485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 121
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr29:16769509-16769755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr29:27041393-27041141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr29:2751029-2750768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 122
               

               
Conread position:
               
421-679
               

               
Cow position:
               
chr29:15950790-15950542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
445-657
               

               
Cow position:
               
chr29:8663681-8663893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr3:60891176-60891331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:17950702-17950932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr3:3907900-3907663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr3:52865710-52865475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
5-639
               

               
Cow position:
               
chr3:27906394-27905755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 183
               

               
Conread position:
               
5-657
               

               
Cow position:
               
chr3:3979304-3979926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 157
               

               
Conread position:
               
6-389
               

               
Cow position:
               
chr3:24593105-24592726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
17-195
               

               
Cow position:
               
chr3:2910013-2909836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
17-657
               

               
Cow position:
               
chr3:64359258-64358626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
20-211
               

               
Cow position:
               
chr3:39325748-39325944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 158
               

               
Conread position:
               
61-233
               

               
Cow position:
               
chr3:63006065-63005893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 98
               

               
Conread position:
               
69-233
               

               
Cow position:
               
chr3:15054997-15054835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
241-633
               

               
Cow position:
               
chr3:57500386-57500001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
225, 129
               

               
Conread position:
               
270-573
               

               
Cow position:
               
chr3:50011568-50011869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 101
               

               
Conread position:
               
275-624
               

               
Cow position:
               
chr3:48329577-48329917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 87
               

               
Conread position:
               
279-517
               

               
Cow position:
               
chr3:80870901-80871142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
193, 91
               

               
Conread position:
               
279-633
               

               
Cow position:
               
chr3:14755334-14754983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 90
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr3:18357706-18357342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
179, 48
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr3:58208914-58208556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
196, 29
               

               
Conread position:
               
280-657
               

               
Cow position:
               
chr3:36099547-36099174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
181, 89
               

               
Conread position:
               
281-637
               

               
Cow position:
               
chr3:14587495-14587829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
264, 26
               

               
Conread position:
               
281-656
               

               
Cow position:
               
chr3:32843265-32842892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
285-647
               

               
Cow position:
               
chr3:52861047-52861394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
175, 12
               

               
Conread position:
               
286-611
               

               
Cow position:
               
chr3:26948497-26948826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
164, 84
               

               
Conread position:
               
288-631
               

               
Cow position:
               
chr3:34094222-34093883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
173, 57
               

               
Conread position:
               
292-658
               

               
Cow position:
               
chr3:54865535-54865172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
156, 58
               

               
Conread position:
               
310-657
               

               
Cow position:
               
chr3:15177512-15177859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
165, 8
               

               
Conread position:
               
310-657
               

               
Cow position:
               
chr3:19692891-19692544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
156, 60
               

               
Conread position:
               
355-557
               

               
Cow position:
               
chr3:60210901-60210701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr3:31354972-31354716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
7, 134
               

               
Conread position:
               
381-632
               

               
Cow position:
               
chr3:34396772-34396519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
6, 133
               

               
Conread position:
               
382-657
               

               
Cow position:
               
chr3:24592346-24592076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
91, 113
               

               
Conread position:
               
386-648
               

               
Cow position:
               
chr3:39325965-39326215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
92, 127
               

               
Conread position:
               
386-651
               

               
Cow position:
               
chr3:2909817-2909551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
64, 132
               

               
Conread position:
               
389-657
               

               
Cow position:
               
chr3:52865488-52865211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
390-562
               

               
Cow position:
               
chr3:14440486-14440315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
392-565
               

               
Cow position:
               
chr3:5047891-5047715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
392-566
               

               
Cow position:
               
chr3:55230411-55230233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
392-632
               

               
Cow position:
               
chr3:6684730-6684976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
392-632
               

               
Cow position:
               
chr3:44255688-44255445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
152, 115
               

               
Conread position:
               
392-639
               

               
Cow position:
               
chr3:3053895-3054132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 57
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr3:2633212-2633464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr3:9716097-9716348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
78, 94
               

               
Conread position:
               
392-643
               

               
Cow position:
               
chr3:42580665-42580425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 73
               

               
Conread position:
               
392-646
               

               
Cow position:
               
chr3:66637331-66637589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr3:14634814-14634544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr3:49677021-49677296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr3:63005888-63005608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
74, 198
               

               
Conread position:
               
392-689
               

               
Cow position:
               
chr3:19801693-19801995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
82, 8
               

               
Conread position:
               
393-657
               

               
Cow position:
               
chr3:17950938-17951202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
82, 102
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr4:1465244-1465063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
5-648
               

               
Cow position:
               
chr4:54954641-54955301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
55-209
               

               
Cow position:
               
chr4:21339087-21338933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
143, 111
               

               
Conread position:
               
69-222
               

               
Cow position:
               
chr4:28829954-28830107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
84, 89
               

               
Conread position:
               
76-511
               

               
Cow position:
               
chr4:1465105-1464688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
279-652
               

               
Cow position:
               
chr4:58883704-58883337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
122, 52
               

               
Conread position:
               
289-571
               

               
Cow position:
               
chr4:21563942-21564223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
179, 62
               

               
Conread position:
               
324-648
               

               
Cow position:
               
chr4:21358678-21358994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
350-646
               

               
Cow position:
               
chr4:28830080-28830366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 170
               

               
Conread position:
               
380-643
               

               
Cow position:
               
chr4:66925079-66925351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
388-646
               

               
Cow position:
               
chr4:51044810-51044553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
157, 25
               

               
Conread position:
               
388-667
               

               
Cow position:
               
chr4:60631163-60630894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
158, 80
               

               
Conread position:
               
388-667
               

               
Cow position:
               
chr4:60672980-60673258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 122
               

               
Conread position:
               
390-657
               

               
Cow position:
               
chr4:21338913-21338641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 124
               

               
Conread position:
               
392-616
               

               
Cow position:
               
chr4:1371908-1371683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
398-648
               

               
Cow position:
               
chr4:34185773-34185523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 107
               

               
Conread position:
               
404-571
               

               
Cow position:
               
chr4:8599033-8598867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
141, 105
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr5:61274233-61273997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
1-657
               

               
Cow position:
               
chr5:46631608-46630979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr5:41963989-41963758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
17-194
               

               
Cow position:
               
chr5:27061677-27061499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 158
               

               
Conread position:
               
17-233
               

               
Cow position:
               
chr5:41530615-41530400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
17-238
               

               
Cow position:
               
chr5:29456575-29456799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 166
               

               
Conread position:
               
34-226
               

               
Cow position:
               
chr5:32674771-32674578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
123-471
               

               
Cow position:
               
chr5:6518761-6519106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 55
               

               
Conread position:
               
156-657
               

               
Cow position:
               
chr5:23688534-23688038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 23
               

               
Conread position:
               
235-463
               

               
Cow position:
               
chr5:28044887-28044673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
272-657
               

               
Cow position:
               
chr5:58746947-58747324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
275-649
               

               
Cow position:
               
chr5:26090791-26090429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 32
               

               
Conread position:
               
276-648
               

               
Cow position:
               
chr5:27488094-27488453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 92
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chr5:34167134-34167476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
192, 46
               

               
Conread position:
               
280-657
               

               
Cow position:
               
chr5:23227329-23227693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 53
               

               
Conread position:
               
281-656
               

               
Cow position:
               
chr5:24151136-24151515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
288-655
               

               
Cow position:
               
chr5:27061002-27060641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 80
               

               
Conread position:
               
288-657
               

               
Cow position:
               
chr5:27000274-27000639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
174, 82
               

               
Conread position:
               
303-657
               

               
Cow position:
               
chr5:52432924-52433276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 199
               

               
Conread position:
               
322-559
               

               
Cow position:
               
chr5:27910203-27909960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr5:28030673-28030861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr5:39165611-39165422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr5:49181465-49181654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
382-640
               

               
Cow position:
               
chr5:27652789-27652525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
384-657
               

               
Cow position:
               
chr5:61274006-61273729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 130
               

               
Conread position:
               
387-559
               

               
Cow position:
               
chr5:4020062-4019890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
390-657
               

               
Cow position:
               
chr5:49594306-49594022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 74
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr5:26768993-26769249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr5:29008557-29008797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
392-646
               

               
Cow position:
               
chr5:4384397-4384652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 122
               

               
Conread position:
               
392-648
               

               
Cow position:
               
chr5:12682332-12682078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr5:46658872-46659141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
392-656
               

               
Cow position:
               
chr5:41963759-41963498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr5:23716778-23716512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
74, 116
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr5:32674566-32674295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
393-655
               

               
Cow position:
               
chr5:28006402-28006662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 121
               

               
Conread position:
               
402-657
               

               
Cow position:
               
chr5:41530393-41530137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 114
               

               
Conread position:
               
412-657
               

               
Cow position:
               
chr5:29456813-29457060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 102
               

               
Conread position:
               
424-565
               

               
Cow position:
               
chr5:32734012-32733873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 83
               

               
Conread position:
               
481-656
               

               
Cow position:
               
chr5:6519160-6519331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
17-238
               

               
Cow position:
               
chr6:6477356-6477134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
17-278
               

               
Cow position:
               
chr6:4905087-4904825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 163
               

               
Conread position:
               
40-657
               

               
Cow position:
               
chr6:65900932-65900334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 138
               

               
Conread position:
               
93-238
               

               
Cow position:
               
chr6:47958251-47958398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
143-507
               

               
Cow position:
               
chr6:10639726-10640089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
275-407
               

               
Cow position:
               
chr6:10053810-10053944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
278-656
               

               
Cow position:
               
chr6:7180458-7180091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
184, 92
               

               
Conread position:
               
279-526
               

               
Cow position:
               
chr6:52803646-52803890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
182, 91
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr6:37477438-37477817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
191, 100
               

               
Conread position:
               
300-655
               

               
Cow position:
               
chr6:4904826-4904477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 68
               

               
Conread position:
               
336-648
               

               
Cow position:
               
chr6:66538592-66538892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 13
               

               
Conread position:
               
379-654
               

               
Cow position:
               
chr6:10053942-10054210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr6:13275886-13276077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chr6:42926703-42926958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-657
               

               
Cow position:
               
chr6:11278394-11278118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
386-657
               

               
Cow position:
               
chr6:38231571-38231854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 139
               

               
Conread position:
               
392-639
               

               
Cow position:
               
chr6:10559301-10559061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 129
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr6:12093542-12093280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
221, 86
               

               
Conread position:
               
403-649
               

               
Cow position:
               
chr6:47958404-47958651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
434-611
               

               
Cow position:
               
chr6:35421321-35421143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr7:20431380-20431109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr7:47048994-47049269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr7:53989932-53990166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
5-425
               

               
Cow position:
               
chr7:63019894-63020319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 174
               

               
Conread position:
               
17-238
               

               
Cow position:
               
chr7:29371567-29371350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 139
               

               
Conread position:
               
275-559
               

               
Cow position:
               
chr7:63961414-63961132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 101
               

               
Conread position:
               
275-566
               

               
Cow position:
               
chr7:39556933-39556644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
187, 95
               

               
Conread position:
               
275-655
               

               
Cow position:
               
chr7:47049722-47050086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 90
               

               
Conread position:
               
276-576
               

               
Cow position:
               
chr7:49445591-49445891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 133
               

               
Conread position:
               
279-476
               

               
Cow position:
               
chr7:25249866-25250061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
279-566
               

               
Cow position:
               
chr7:22680710-22680424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
279-571
               

               
Cow position:
               
chr7:23447820-23447544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
266, 20
               

               
Conread position:
               
279-655
               

               
Cow position:
               
chr7:31864175-31864523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
188, 46
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr7:49289875-49290265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
190, 31
               

               
Conread position:
               
286-656
               

               
Cow position:
               
chr7:26883443-26883808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 8
               

               
Conread position:
               
289-657
               

               
Cow position:
               
chr7:60858041-60857683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
297-656
               

               
Cow position:
               
chr7:20429687-20429338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 72
               

               
Conread position:
               
299-472
               

               
Cow position:
               
chr7:54886828-54886997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
302-657
               

               
Cow position:
               
chr7:37020980-37021323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
163, 71
               

               
Conread position:
               
337-657
               

               
Cow position:
               
chr7:64394875-64395171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
358-559
               

               
Cow position:
               
chr7:35288257-35288052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
358-657
               

               
Cow position:
               
chr7:21309569-21309888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 238
               

               
Conread position:
               
362-656
               

               
Cow position:
               
chr7:30156931-30156625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
366-648
               

               
Cow position:
               
chr7:20107163-20106883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 131
               

               
Conread position:
               
368-553
               

               
Cow position:
               
chr7:26890128-26890317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr7:38535945-38536130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr7:67416461-67416651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
380-643
               

               
Cow position:
               
chr7:18936166-18935898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
79, 131
               

               
Conread position:
               
380-648
               

               
Cow position:
               
chr7:21242715-21242444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
16, 133
               

               
Conread position:
               
381-655
               

               
Cow position:
               
chr7:67425771-67426048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
392-616
               

               
Cow position:
               
chr7:41489547-41489775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
392-648
               

               
Cow position:
               
chr7:68779456-68779203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
392-649
               

               
Cow position:
               
chr7:48632806-48633064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
392-656
               

               
Cow position:
               
chr7:29371351-29371091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr7:51013374-51013640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 122
               

               
Conread position:
               
399-657
               

               
Cow position:
               
chr7:53014903-53015164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
66, 114
               

               
Conread position:
               
402-648
               

               
Cow position:
               
chr7:53990171-53990416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 110
               

               
Conread position:
               
429-648
               

               
Cow position:
               
chr7:54196297-54196081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 65
               

               
Conread position:
               
491-648
               

               
Cow position:
               
chr7:63020354-63020511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr8:27091993-27091681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 17
               

               
Conread position:
               
1-648
               

               
Cow position:
               
chr8:45162159-45161510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 18
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chr8:25541330-25541601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
17-657
               

               
Cow position:
               
chr8:44692536-44693158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 169
               

               
Conread position:
               
20-372
               

               
Cow position:
               
chr8:38608579-38608235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
38-269
               

               
Cow position:
               
chr8:8905686-8905456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
193, 126
               

               
Conread position:
               
53-195
               

               
Cow position:
               
chr8:24421379-24421238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
176-657
               

               
Cow position:
               
chr8:53426705-53427189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 134
               

               
Conread position:
               
262-657
               

               
Cow position:
               
chr8:25542075-25542450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 54
               

               
Conread position:
               
275-410
               

               
Cow position:
               
chr8:50752792-50752925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
275-657
               

               
Cow position:
               
chr8:13735127-13735505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
279-666
               

               
Cow position:
               
chr8:12664546-12664160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
280-639
               

               
Cow position:
               
chr8:42466886-42467237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
265, 89
               

               
Conread position:
               
281-575
               

               
Cow position:
               
chr8:45693903-45693607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
179, 89
               

               
Conread position:
               
318-649
               

               
Cow position:
               
chr8:8904977-8904653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
335-656
               

               
Cow position:
               
chr8:23766809-23766496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
350-656
               

               
Cow position:
               
chr8:11590195-11590492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 20
               

               
Conread position:
               
369-645
               

               
Cow position:
               
chr8:42658887-42658621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 141
               

               
Conread position:
               
377-666
               

               
Cow position:
               
chr8:9540927-9540625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
380-565
               

               
Cow position:
               
chr8:45317522-45317333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
380-657
               

               
Cow position:
               
chr8:47884587-47884879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
11, 70
               

               
Conread position:
               
381-655
               

               
Cow position:
               
chr8:44077442-44077169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 127
               

               
Conread position:
               
382-645
               

               
Cow position:
               
chr8:38607944-38607682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 129
               

               
Conread position:
               
386-657
               

               
Cow position:
               
chr8:33429507-33429771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
8, 140
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr8:45188675-45188927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 100
               

               
Conread position:
               
392-642
               

               
Cow position:
               
chr8:61036301-61036058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 122
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr8:11800824-11801095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
392-657
               

               
Cow position:
               
chr8:19229391-19229661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
392-664
               

               
Cow position:
               
chr8:27984222-27983940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
394-657
               

               
Cow position:
               
chr8:42162060-42161796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
76, 120
               

               
Conread position:
               
402-648
               

               
Cow position:
               
chr8:11970966-11970718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
94, 108
               

               
Conread position:
               
422-657
               

               
Cow position:
               
chr8:24421161-24420933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 96
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr9:13219256-13219391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr9:3802528-3802744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr9:18002263-18002479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 171
               

               
Conread position:
               
31-210
               

               
Cow position:
               
chr9:11321530-11321701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
173-558
               

               
Cow position:
               
chr9:13219403-13219775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
276-666
               

               
Cow position:
               
chr9:64118000-64118372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
279-511
               

               
Cow position:
               
chr9:3579952-3579720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
279-526
               

               
Cow position:
               
chr9:8167079-8166835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
17, 92
               

               
Conread position:
               
279-612
               

               
Cow position:
               
chr9:23400779-23401114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
172, 53
               

               
Conread position:
               
279-630
               

               
Cow position:
               
chr9:18835862-18836197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
194, 52
               

               
Conread position:
               
279-647
               

               
Cow position:
               
chr9:20310575-20310216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
279-649
               

               
Cow position:
               
chr9:6111788-6111443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
190, 53
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chr9:34107723-34107348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 58
               

               
Conread position:
               
280-499
               

               
Cow position:
               
chr9:6973222-6973444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
5, 14
               

               
Conread position:
               
280-657
               

               
Cow position:
               
chr9:4983926-4984284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
186, 29
               

               
Conread position:
               
281-657
               

               
Cow position:
               
chr9:10318650-10319016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
164, 81
               

               
Conread position:
               
303-538
               

               
Cow position:
               
chr9:240919-240686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
91, 33
               

               
Conread position:
               
313-656
               

               
Cow position:
               
chr9:14962264-14961926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
314-571
               

               
Cow position:
               
chr9:26713123-26712869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
147, 47
               

               
Conread position:
               
322-687
               

               
Cow position:
               
chr9:35657169-35657526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
129, 41
               

               
Conread position:
               
332-657
               

               
Cow position:
               
chr9:26237313-26237617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
373-648
               

               
Cow position:
               
chr9:832219-831933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
380-607
               

               
Cow position:
               
chr9:10314632-10314864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
385-552
               

               
Cow position:
               
chr9:2488757-2488586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 128
               

               
Conread position:
               
387-656
               

               
Cow position:
               
chr9:3802753-3803019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
392-548
               

               
Cow position:
               
chr9:45872564-45872718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
392-611
               

               
Cow position:
               
chr9:59443070-59443292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr9:8969792-8969536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chr9:28626761-28626521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
395-627
               

               
Cow position:
               
chr9:54359851-54360088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 117
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chrX:29795190-29794967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chrX:25041516-25041279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chrX:21585934-21586148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
11-212
               

               
Cow position:
               
chrX:28552941-28553143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
24, 163
               

               
Conread position:
               
19-233
               

               
Cow position:
               
chrX:31371889-31372100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
16, 141
               

               
Conread position:
               
41-267
               

               
Cow position:
               
chrX:17670007-17669781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
171, 132
               

               
Conread position:
               
279-552
               

               
Cow position:
               
chrX:30369938-30369674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
127, 91
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chrX:31079576-31079940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chrX:13051725-13052095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 91
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chrX:18532011-18532415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 176
               

               
Conread position:
               
279-657
               

               
Cow position:
               
chrX:22131662-22131281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 91
               

               
Conread position:
               
280-655
               

               
Cow position:
               
chrX:2142356-2142721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
156, 90
               

               
Conread position:
               
281-575
               

               
Cow position:
               
chrX:34987703-34987988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
182, 89
               

               
Conread position:
               
285-571
               

               
Cow position:
               
chrX:19185893-19185609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
173, 14
               

               
Conread position:
               
286-656
               

               
Cow position:
               
chrX:17669359-17668995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 91
               

               
Conread position:
               
298-476
               

               
Cow position:
               
chrX:20699344-20699171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
310-548
               

               
Cow position:
               
chrX:24376437-24376671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 60
               

               
Conread position:
               
316-614
               

               
Cow position:
               
chrX:21586087-21586392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 205
               

               
Conread position:
               
325-447
               

               
Cow position:
               
chrX:7734290-7734409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
350-565
               

               
Cow position:
               
chrX:39716938-39717151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
369-545
               

               
Cow position:
               
chrX:12974539-12974361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 143
               

               
Conread position:
               
379-553
               

               
Cow position:
               
chrX:28604935-28604756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 137
               

               
Conread position:
               
379-648
               

               
Cow position:
               
chrX:28549034-28549303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 135
               

               
Conread position:
               
380-640
               

               
Cow position:
               
chrX:25332228-25332493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
381-565
               

               
Cow position:
               
chrX:31372092-31372279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
92, 133
               

               
Conread position:
               
389-657
               

               
Cow position:
               
chrX:2788069-2787803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
390-657
               

               
Cow position:
               
chrX:28553166-28553433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
392-559
               

               
Cow position:
               
chrX:31034843-31035012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
392-580
               

               
Cow position:
               
chrX:30144350-30144157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
77, 108
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chrX:21602048-21602300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
80, 61
               

               
Conread position:
               
392-640
               

               
Cow position:
               
chrX:30990793-30990541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
392-652
               

               
Cow position:
               
chrX:35016988-35017257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
395-643
               

               
Cow position:
               
chrX:40057898-40057645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
395-657
               

               
Cow position:
               
chrX:29794953-29794694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
400-657
               

               
Cow position:
               
chrX:15598086-15598339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
402-648
               

               
Cow position:
               
chrX:29283890-29284135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
73, 96
               

               
Conread position:
               
424-639
               

               
Cow position:
               
chrX:13007439-13007219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
431-656
               

               
Cow position:
               
chrX:35019842-35020073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
469-664
               

               
Cow position:
               
chrX:29883020-29882827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 39