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Cow genome map

           
Conread name:
           
Ss1.1-raor015_j22.5
        

               
Conread position:
               
528-813
               

               
Cow position:
               
chr10:27376805-27376531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
552-923
               

               
Cow position:
               
chr10:32324536-32324161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
554-909
               

               
Cow position:
               
chr10:33962911-33963282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
555-724
               

               
Cow position:
               
chr10:13219614-13219437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
557-813
               

               
Cow position:
               
chr10:27967160-27967437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
73, 167
               

               
Conread position:
               
557-924
               

               
Cow position:
               
chr10:17441209-17441576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 153
               

               
Conread position:
               
558-828
               

               
Cow position:
               
chr10:19594027-19593765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
73, 64
               

               
Conread position:
               
558-919
               

               
Cow position:
               
chr10:23305259-23304897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
163, 73
               

               
Conread position:
               
558-922
               

               
Cow position:
               
chr10:68351444-68351816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 96
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr10:28021485-28021859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr10:63711094-63711472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
35, 115
               

               
Conread position:
               
560-725
               

               
Cow position:
               
chr10:17077383-17077216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
566-813
               

               
Cow position:
               
chr10:40448895-40448640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
65, 139
               

               
Conread position:
               
567-813
               

               
Cow position:
               
chr10:50723107-50723355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 187
               

               
Conread position:
               
621-917
               

               
Cow position:
               
chr10:31820494-31820799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
630-846
               

               
Cow position:
               
chr10:15516010-15515791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
641-913
               

               
Cow position:
               
chr10:6650723-6650452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
741-923
               

               
Cow position:
               
chr10:8690275-8690085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
755-924
               

               
Cow position:
               
chr10:17077078-17076912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr10:21388389-21388210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 158
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr10:32983611-32983433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr10:40718162-40718001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr10:48354897-48355057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
759-924
               

               
Cow position:
               
chr10:36036183-36036013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
760-921
               

               
Cow position:
               
chr10:60611190-60611021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
761-924
               

               
Cow position:
               
chr10:66000824-66000653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 167
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr10:32912473-32912625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
525-859
               

               
Cow position:
               
chr11:83790035-83789705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 174
               

               
Conread position:
               
551-923
               

               
Cow position:
               
chr11:55010505-55010885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 66
               

               
Conread position:
               
552-741
               

               
Cow position:
               
chr11:41459793-41459989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
552-806
               

               
Cow position:
               
chr11:67545289-67545536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
553-918
               

               
Cow position:
               
chr11:21621817-21622193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
557-693
               

               
Cow position:
               
chr11:35732574-35732716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
557-902
               

               
Cow position:
               
chr11:73450077-73450427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
557-918
               

               
Cow position:
               
chr11:53680384-53680004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 180
               

               
Conread position:
               
557-924
               

               
Cow position:
               
chr11:16197353-16197717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
558-703
               

               
Cow position:
               
chr11:17368198-17368050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr11:33913194-33912950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 68
               

               
Conread position:
               
558-812
               

               
Cow position:
               
chr11:39660851-39660594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
558-921
               

               
Cow position:
               
chr11:64125547-64125165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 199
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr11:64888478-64888108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr11:82102627-82103001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 99
               

               
Conread position:
               
564-806
               

               
Cow position:
               
chr11:72088194-72088436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
591-921
               

               
Cow position:
               
chr11:32601203-32600877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
595-879
               

               
Cow position:
               
chr11:13737789-13737495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
708-923
               

               
Cow position:
               
chr11:2421535-2421317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
718-922
               

               
Cow position:
               
chr11:37032088-37032292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
724-924
               

               
Cow position:
               
chr11:75260257-75260050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
759-920
               

               
Cow position:
               
chr11:5188517-5188350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 129
               

               
Conread position:
               
759-922
               

               
Cow position:
               
chr11:5144201-5144369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
759-922
               

               
Cow position:
               
chr11:5251758-5251927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr11:17706803-17706633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
760-924
               

               
Cow position:
               
chr11:37916062-37915893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 129
               

               
Conread position:
               
761-905
               

               
Cow position:
               
chr11:34413775-34413925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 140
               

               
Conread position:
               
761-918
               

               
Cow position:
               
chr11:75202188-75202030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
761-920
               

               
Cow position:
               
chr11:18480600-18480760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
761-922
               

               
Cow position:
               
chr11:6605104-6604937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr11:11683066-11682901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
762-922
               

               
Cow position:
               
chr11:36901173-36901339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
762-923
               

               
Cow position:
               
chr11:42471720-42471890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
779-921
               

               
Cow position:
               
chr11:61286751-61286902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
535-923
               

               
Cow position:
               
chr12:24176956-24176575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
542-806
               

               
Cow position:
               
chr12:13024745-13025011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
547-748
               

               
Cow position:
               
chr12:40929384-40929592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
552-923
               

               
Cow position:
               
chr12:36596458-36596819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
553-865
               

               
Cow position:
               
chr12:4497726-4498030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
80, 202
               

               
Conread position:
               
557-797
               

               
Cow position:
               
chr12:24012100-24012348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 87
               

               
Conread position:
               
558-741
               

               
Cow position:
               
chr12:12009460-12009647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 110
               

               
Conread position:
               
558-804
               

               
Cow position:
               
chr12:8640286-8640531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr12:24544697-24545055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr12:28545653-28545289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr12:30190332-30189947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
38, 196
               

               
Conread position:
               
559-811
               

               
Cow position:
               
chr12:5300393-5300645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 196
               

               
Conread position:
               
566-923
               

               
Cow position:
               
chr12:15382965-15383328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
571-921
               

               
Cow position:
               
chr12:42874202-42874549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
21, 152
               

               
Conread position:
               
585-812
               

               
Cow position:
               
chr12:13647129-13647360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 75
               

               
Conread position:
               
586-918
               

               
Cow position:
               
chr12:3139496-3139151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 170
               

               
Conread position:
               
655-923
               

               
Cow position:
               
chr12:30922437-30922160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
669-924
               

               
Cow position:
               
chr12:32954811-32955068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
726-920
               

               
Cow position:
               
chr12:1435751-1435552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
727-919
               

               
Cow position:
               
chr12:12010194-12010389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
732-921
               

               
Cow position:
               
chr12:19189896-19189703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
754-916
               

               
Cow position:
               
chr12:34408523-34408693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 134
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr12:43972071-43972236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 155
               

               
Conread position:
               
549-905
               

               
Cow position:
               
chr13:52281979-52282334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
550-906
               

               
Cow position:
               
chr13:28091264-28091619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
552-725
               

               
Cow position:
               
chr13:646366-646189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
552-746
               

               
Cow position:
               
chr13:15591180-15591383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
555-813
               

               
Cow position:
               
chr13:12485060-12484799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
36, 199
               

               
Conread position:
               
556-797
               

               
Cow position:
               
chr13:14699577-14699321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 62
               

               
Conread position:
               
558-804
               

               
Cow position:
               
chr13:35752067-35751830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr13:56680687-56680447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 156
               

               
Conread position:
               
560-917
               

               
Cow position:
               
chr13:31495153-31494794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
560-924
               

               
Cow position:
               
chr13:41843537-41843163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
561-923
               

               
Cow position:
               
chr13:61030669-61031042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 195
               

               
Conread position:
               
566-918
               

               
Cow position:
               
chr13:19546089-19546456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 189
               

               
Conread position:
               
587-922
               

               
Cow position:
               
chr13:61895281-61894937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
596-805
               

               
Cow position:
               
chr13:34348786-34348573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
36, 158
               

               
Conread position:
               
596-918
               

               
Cow position:
               
chr13:38463262-38463591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
603-918
               

               
Cow position:
               
chr13:60312687-60312353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
30, 161
               

               
Conread position:
               
655-924
               

               
Cow position:
               
chr13:16571134-16570863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
69, 94
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr13:22946450-22946607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr13:45304860-45305024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
763-923
               

               
Cow position:
               
chr13:53161396-53161556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 107
               

               
Conread position:
               
767-923
               

               
Cow position:
               
chr13:43360402-43360562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 117
               

               
Conread position:
               
548-723
               

               
Cow position:
               
chr14:40013664-40013846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
557-770
               

               
Cow position:
               
chr14:7951129-7950909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 200
               

               
Conread position:
               
558-749
               

               
Cow position:
               
chr14:48395175-48395370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 87
               

               
Conread position:
               
558-797
               

               
Cow position:
               
chr14:49272865-49272627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
70, 7
               

               
Conread position:
               
559-923
               

               
Cow position:
               
chr14:16814184-16813811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 135
               

               
Conread position:
               
566-806
               

               
Cow position:
               
chr14:28198761-28198988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
108, 24
               

               
Conread position:
               
590-922
               

               
Cow position:
               
chr14:121816-121473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
603-865
               

               
Cow position:
               
chr14:27243528-27243786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
214, 46
               

               
Conread position:
               
628-923
               

               
Cow position:
               
chr14:7940319-7940017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 122
               

               
Conread position:
               
694-923
               

               
Cow position:
               
chr14:26474111-26473891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
742-865
               

               
Cow position:
               
chr14:3751530-3751657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
758-922
               

               
Cow position:
               
chr14:24445631-24445461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr14:24206459-24206629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr14:9229084-9228917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
763-921
               

               
Cow position:
               
chr14:25934665-25934493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
765-923
               

               
Cow position:
               
chr14:8033117-8032957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
775-920
               

               
Cow position:
               
chr14:7950882-7950735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
776-920
               

               
Cow position:
               
chr14:12337508-12337360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
557-813
               

               
Cow position:
               
chr15:11210115-11210374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
557-898
               

               
Cow position:
               
chr15:3727318-3727669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 198
               

               
Conread position:
               
558-725
               

               
Cow position:
               
chr15:26128123-26127954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 100
               

               
Conread position:
               
558-821
               

               
Cow position:
               
chr15:9012513-9012768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr15:15213879-15214254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 116
               

               
Conread position:
               
560-920
               

               
Cow position:
               
chr15:45618620-45618263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 145
               

               
Conread position:
               
566-806
               

               
Cow position:
               
chr15:31602973-31603213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
566-806
               

               
Cow position:
               
chr15:31942549-31942306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
566-872
               

               
Cow position:
               
chr15:8983526-8983229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
157, 69
               

               
Conread position:
               
566-921
               

               
Cow position:
               
chr15:36525382-36525014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
567-813
               

               
Cow position:
               
chr15:25890948-25891191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
569-924
               

               
Cow position:
               
chr15:39500184-39499819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 127
               

               
Conread position:
               
585-908
               

               
Cow position:
               
chr15:37364708-37365037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 145
               

               
Conread position:
               
608-918
               

               
Cow position:
               
chr15:31273537-31273870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
631-919
               

               
Cow position:
               
chr15:27867913-27867634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 24
               

               
Conread position:
               
661-924
               

               
Cow position:
               
chr15:10313946-10314200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
722-919
               

               
Cow position:
               
chr15:26127692-26127489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
760-923
               

               
Cow position:
               
chr15:45237066-45237236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
762-923
               

               
Cow position:
               
chr15:12863894-12864058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
555-688
               

               
Cow position:
               
chr16:29182298-29182435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 39
               

               
Conread position:
               
557-923
               

               
Cow position:
               
chr16:33129014-33129373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 95
               

               
Conread position:
               
558-725
               

               
Cow position:
               
chr16:32174044-32173874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
558-915
               

               
Cow position:
               
chr16:9252228-9252612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
558-921
               

               
Cow position:
               
chr16:16332031-16332398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 143
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr16:54011846-54011473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 238
               

               
Conread position:
               
561-771
               

               
Cow position:
               
chr16:56599155-56599370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 31
               

               
Conread position:
               
567-918
               

               
Cow position:
               
chr16:19711141-19711488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
568-923
               

               
Cow position:
               
chr16:45573201-45572823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
569-813
               

               
Cow position:
               
chr16:51098258-51098497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 165
               

               
Conread position:
               
589-813
               

               
Cow position:
               
chr16:27159107-27159329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 163
               

               
Conread position:
               
595-807
               

               
Cow position:
               
chr16:36918599-36918801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
595-924
               

               
Cow position:
               
chr16:49898259-49898594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
596-810
               

               
Cow position:
               
chr16:17034562-17034345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
631-924
               

               
Cow position:
               
chr16:15878677-15878978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
101, 23
               

               
Conread position:
               
636-810
               

               
Cow position:
               
chr16:9574695-9574867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 109
               

               
Conread position:
               
752-921
               

               
Cow position:
               
chr16:8786528-8786705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr16:33426736-33426568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
761-923
               

               
Cow position:
               
chr16:15126132-15125970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
762-920
               

               
Cow position:
               
chr16:19937624-19937456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr16:26065834-26065667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr16:27974445-27974613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr16:32884849-32884679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
762-922
               

               
Cow position:
               
chr16:33595105-33594938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
531-921
               

               
Cow position:
               
chr17:21613303-21613702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
557-802
               

               
Cow position:
               
chr17:1230586-1230338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 89
               

               
Conread position:
               
557-806
               

               
Cow position:
               
chr17:20318398-20318146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
557-821
               

               
Cow position:
               
chr17:18888028-18888289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
557-922
               

               
Cow position:
               
chr17:1262560-1262192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
557-923
               

               
Cow position:
               
chr17:22519846-22520213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
558-810
               

               
Cow position:
               
chr17:33244439-33244689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
558-820
               

               
Cow position:
               
chr17:23551054-23551307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
558-831
               

               
Cow position:
               
chr17:1554690-1554429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
165, 53
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr17:12740195-12739839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr17:22581439-22581807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 106
               

               
Conread position:
               
559-812
               

               
Cow position:
               
chr17:10049181-10048921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
73, 91
               

               
Conread position:
               
567-921
               

               
Cow position:
               
chr17:20194432-20194062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 208
               

               
Conread position:
               
571-815
               

               
Cow position:
               
chr17:31996568-31996816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 178
               

               
Conread position:
               
582-923
               

               
Cow position:
               
chr17:38875220-38874871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
584-813
               

               
Cow position:
               
chr17:30149402-30149177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
591-805
               

               
Cow position:
               
chr17:21605655-21605443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
595-918
               

               
Cow position:
               
chr17:14610370-14610041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
38, 158
               

               
Conread position:
               
754-921
               

               
Cow position:
               
chr17:25546429-25546249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
754-921
               

               
Cow position:
               
chr17:43730261-43730430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 112
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr17:1491093-1491255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr17:1730061-1730229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr17:25557119-25556963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
107, 38
               

               
Conread position:
               
760-907
               

               
Cow position:
               
chr17:892097-891943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
760-921
               

               
Cow position:
               
chr17:11124822-11124661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr17:42337558-42337729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr17:6762944-6763110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr17:17642050-17641883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr17:21460811-21460976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
768-922
               

               
Cow position:
               
chr17:5348419-5348260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
768-924
               

               
Cow position:
               
chr17:17449352-17449189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
770-923
               

               
Cow position:
               
chr17:23564843-23564999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
777-921
               

               
Cow position:
               
chr17:1757097-1756947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
555-767
               

               
Cow position:
               
chr18:11693880-11694093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 102
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr18:37715133-37714879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
72, 145
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr18:23430820-23431183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr18:49898909-49899281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
570-805
               

               
Cow position:
               
chr18:2782928-2783167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 138
               

               
Conread position:
               
574-805
               

               
Cow position:
               
chr18:32971756-32971522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
688-923
               

               
Cow position:
               
chr18:38329914-38329674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
754-921
               

               
Cow position:
               
chr18:4940616-4940455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr18:21549076-21549248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 145
               

               
Conread position:
               
761-923
               

               
Cow position:
               
chr18:11234716-11234559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
762-924
               

               
Cow position:
               
chr18:35508229-35508391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
764-921
               

               
Cow position:
               
chr18:44505164-44505335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
540-725
               

               
Cow position:
               
chr19:4477852-4478044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
554-924
               

               
Cow position:
               
chr19:2772328-2771950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
555-918
               

               
Cow position:
               
chr19:8282626-8282993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
66, 114
               

               
Conread position:
               
557-693
               

               
Cow position:
               
chr19:25312743-25312882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 98
               

               
Conread position:
               
558-803
               

               
Cow position:
               
chr19:48839749-48839996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
558-813
               

               
Cow position:
               
chr19:21109027-21108769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
74, 97
               

               
Conread position:
               
558-879
               

               
Cow position:
               
chr19:38994390-38994714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
72, 191
               

               
Conread position:
               
558-922
               

               
Cow position:
               
chr19:33517234-33517628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr19:22688402-22688765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
566-828
               

               
Cow position:
               
chr19:46626753-46626485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
569-902
               

               
Cow position:
               
chr19:44738456-44738789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
585-921
               

               
Cow position:
               
chr19:8450656-8451013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
587-913
               

               
Cow position:
               
chr19:2602762-2602430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
595-800
               

               
Cow position:
               
chr19:12790280-12790075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
635-920
               

               
Cow position:
               
chr19:18937428-18937717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
731-919
               

               
Cow position:
               
chr19:48049838-48049643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
743-924
               

               
Cow position:
               
chr19:14544180-14543992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 158
               

               
Conread position:
               
762-919
               

               
Cow position:
               
chr19:7671370-7671531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr19:33743625-33743782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
534-744
               

               
Cow position:
               
chr20:3877010-3876794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
553-714
               

               
Cow position:
               
chr20:38428200-38428363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
557-918
               

               
Cow position:
               
chr20:41020701-41020339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr20:39441402-39441044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
560-924
               

               
Cow position:
               
chr20:19466312-19466675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
566-872
               

               
Cow position:
               
chr20:25112027-25112330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
593-913
               

               
Cow position:
               
chr20:17306307-17306642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
705-919
               

               
Cow position:
               
chr20:34958507-34958722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
740-924
               

               
Cow position:
               
chr20:37345809-37345617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
751-923
               

               
Cow position:
               
chr20:22402017-22402196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
761-923
               

               
Cow position:
               
chr20:35704740-35704907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
557-923
               

               
Cow position:
               
chr21:3790245-3789873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
558-794
               

               
Cow position:
               
chr21:46770784-46770542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
558-916
               

               
Cow position:
               
chr21:2988782-2988411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 143
               

               
Conread position:
               
558-921
               

               
Cow position:
               
chr21:26575661-26576031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
560-771
               

               
Cow position:
               
chr21:20541569-20541773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
564-924
               

               
Cow position:
               
chr21:13391129-13391493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 185
               

               
Conread position:
               
566-921
               

               
Cow position:
               
chr21:22513394-22513030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 184
               

               
Conread position:
               
566-923
               

               
Cow position:
               
chr21:1598273-1597917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 91
               

               
Conread position:
               
571-806
               

               
Cow position:
               
chr21:48533494-48533266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
595-923
               

               
Cow position:
               
chr21:2854923-2854596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
609-907
               

               
Cow position:
               
chr21:4510421-4510115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
754-921
               

               
Cow position:
               
chr21:6326861-6326687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr21:6134851-6134684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr21:7074374-7074204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr21:8850913-8851077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr21:20786204-20786035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
761-922
               

               
Cow position:
               
chr21:44721746-44721912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr21:24735576-24735413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
762-923
               

               
Cow position:
               
chr21:24428935-24429103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
768-921
               

               
Cow position:
               
chr21:41548290-41548131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
775-921
               

               
Cow position:
               
chr21:23639857-23639708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
537-924
               

               
Cow position:
               
chr22:43969154-43969547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
549-916
               

               
Cow position:
               
chr22:8844147-8843769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
554-890
               

               
Cow position:
               
chr22:2410095-2409757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
557-917
               

               
Cow position:
               
chr22:6193740-6193377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
558-711
               

               
Cow position:
               
chr22:12152441-12152599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
558-763
               

               
Cow position:
               
chr22:5459833-5459623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
559-806
               

               
Cow position:
               
chr22:22495775-22495530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
566-804
               

               
Cow position:
               
chr22:36608592-36608828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
566-923
               

               
Cow position:
               
chr22:6555045-6555394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
585-921
               

               
Cow position:
               
chr22:5350956-5350606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
591-923
               

               
Cow position:
               
chr22:10467717-10468047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
595-813
               

               
Cow position:
               
chr22:31687927-31687709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
602-918
               

               
Cow position:
               
chr22:11403734-11404082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 161
               

               
Conread position:
               
754-924
               

               
Cow position:
               
chr22:45605118-45604941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
759-918
               

               
Cow position:
               
chr22:5653753-5653593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
761-918
               

               
Cow position:
               
chr22:26040253-26040093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
762-914
               

               
Cow position:
               
chr22:28532636-28532795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
557-741
               

               
Cow position:
               
chr23:2502483-2502297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
557-803
               

               
Cow position:
               
chr23:4521154-4520903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
558-728
               

               
Cow position:
               
chr23:22714518-22714347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 105
               

               
Conread position:
               
559-919
               

               
Cow position:
               
chr23:5914828-5914450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 140
               

               
Conread position:
               
568-746
               

               
Cow position:
               
chr23:22696042-22696226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
576-919
               

               
Cow position:
               
chr23:2284315-2284664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 21
               

               
Conread position:
               
589-815
               

               
Cow position:
               
chr23:29429465-29429235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
590-921
               

               
Cow position:
               
chr23:20076153-20076502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
599-924
               

               
Cow position:
               
chr23:6590894-6591225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 127
               

               
Conread position:
               
630-923
               

               
Cow position:
               
chr23:4352842-4353140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
743-924
               

               
Cow position:
               
chr23:10705612-10705423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
759-919
               

               
Cow position:
               
chr23:39492085-39491918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr23:4785528-4785701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
760-902
               

               
Cow position:
               
chr23:38221123-38221270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
760-924
               

               
Cow position:
               
chr23:36379419-36379590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr23:4506424-4506591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr23:21730444-21730278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr23:27010272-27010442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
768-923
               

               
Cow position:
               
chr23:4456405-4456243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
542-924
               

               
Cow position:
               
chr24:14537836-14537452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
91, 117
               

               
Conread position:
               
553-813
               

               
Cow position:
               
chr24:28808474-28808217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 179
               

               
Conread position:
               
555-918
               

               
Cow position:
               
chr24:26964013-26964374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
558-872
               

               
Cow position:
               
chr24:27592102-27592416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
71, 195
               

               
Conread position:
               
560-898
               

               
Cow position:
               
chr24:29503014-29502687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
564-906
               

               
Cow position:
               
chr24:7775151-7775504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 135
               

               
Conread position:
               
566-924
               

               
Cow position:
               
chr24:39036413-39036769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
142, 92
               

               
Conread position:
               
572-918
               

               
Cow position:
               
chr24:24264494-24264860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
63, 187
               

               
Conread position:
               
580-813
               

               
Cow position:
               
chr24:42936590-42936823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
53, 155
               

               
Conread position:
               
582-806
               

               
Cow position:
               
chr24:18408953-18409181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr24:36745944-36746107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr24:27743469-27743297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr24:10568653-10568500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr24:28829685-28829519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
764-921
               

               
Cow position:
               
chr24:2454785-2454621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
553-859
               

               
Cow position:
               
chr25:11486818-11487130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
77, 6
               

               
Conread position:
               
557-780
               

               
Cow position:
               
chr25:3691547-3691330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
557-872
               

               
Cow position:
               
chr25:36157894-36157578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
558-711
               

               
Cow position:
               
chr25:12092988-12092831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
558-804
               

               
Cow position:
               
chr25:16143886-16144136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr25:31537042-31537296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 48
               

               
Conread position:
               
558-813
               

               
Cow position:
               
chr25:21158094-21157840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
73, 151
               

               
Conread position:
               
558-827
               

               
Cow position:
               
chr25:13847167-13847440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
558-917
               

               
Cow position:
               
chr25:12409420-12409043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 109
               

               
Conread position:
               
560-710
               

               
Cow position:
               
chr25:9835835-9835980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
567-813
               

               
Cow position:
               
chr25:8547772-8547521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
24, 190
               

               
Conread position:
               
591-865
               

               
Cow position:
               
chr25:18563646-18563369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
8, 180
               

               
Conread position:
               
593-728
               

               
Cow position:
               
chr25:23205657-23205517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
593-921
               

               
Cow position:
               
chr25:11408727-11409066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
595-918
               

               
Cow position:
               
chr25:15661972-15662297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
41, 160
               

               
Conread position:
               
595-923
               

               
Cow position:
               
chr25:40632437-40632111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 64
               

               
Conread position:
               
597-922
               

               
Cow position:
               
chr25:16116856-16117191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
655-921
               

               
Cow position:
               
chr25:7053147-7052889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
731-920
               

               
Cow position:
               
chr25:9835982-9836176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
751-924
               

               
Cow position:
               
chr25:10473809-10473985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
754-924
               

               
Cow position:
               
chr25:8543839-8544002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
759-908
               

               
Cow position:
               
chr25:10291988-10292145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
759-917
               

               
Cow position:
               
chr25:9318-9153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr25:11433914-11433746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 139
               

               
Conread position:
               
759-924
               

               
Cow position:
               
chr25:7493631-7493465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr25:14556233-14556401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
762-916
               

               
Cow position:
               
chr25:15456381-15456218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
762-918
               

               
Cow position:
               
chr25:12254732-12254569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
762-918
               

               
Cow position:
               
chr25:15656368-15656531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr25:7663889-7664040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr25:36035036-36035199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
762-923
               

               
Cow position:
               
chr25:22157548-22157710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
768-923
               

               
Cow position:
               
chr25:36818585-36818423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
768-924
               

               
Cow position:
               
chr25:6130778-6130936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
546-806
               

               
Cow position:
               
chr26:12266378-12266116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 70
               

               
Conread position:
               
558-813
               

               
Cow position:
               
chr26:28386524-28386276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 188
               

               
Conread position:
               
599-913
               

               
Cow position:
               
chr26:12188662-12188343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
630-924
               

               
Cow position:
               
chr26:5993054-5993353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
756-923
               

               
Cow position:
               
chr26:7955212-7955044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr26:27470431-27470262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr26:33702641-33702811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
551-921
               

               
Cow position:
               
chr27:22630253-22629869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 133
               

               
Conread position:
               
556-887
               

               
Cow position:
               
chr27:26513341-26512999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
80, 194
               

               
Conread position:
               
558-872
               

               
Cow position:
               
chr27:24909038-24908724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
566-923
               

               
Cow position:
               
chr27:15408864-15408492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
567-813
               

               
Cow position:
               
chr27:27286049-27285804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
572-921
               

               
Cow position:
               
chr27:22277609-22277254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 86
               

               
Conread position:
               
588-924
               

               
Cow position:
               
chr27:15218536-15218190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 165
               

               
Conread position:
               
754-918
               

               
Cow position:
               
chr27:24717615-24717780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 103
               

               
Conread position:
               
756-921
               

               
Cow position:
               
chr27:29673811-29673640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
756-923
               

               
Cow position:
               
chr27:24722622-24722439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr27:26124469-26124638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
759-924
               

               
Cow position:
               
chr27:13705237-13705069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
760-922
               

               
Cow position:
               
chr27:11478209-11478377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 126
               

               
Conread position:
               
761-923
               

               
Cow position:
               
chr27:1791064-1791229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr27:15106384-15106219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
764-924
               

               
Cow position:
               
chr27:11596072-11596229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
765-923
               

               
Cow position:
               
chr27:22441650-22441815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
765-923
               

               
Cow position:
               
chr27:24715953-24715790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
508-923
               

               
Cow position:
               
chr28:34697023-34697424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 20
               

               
Conread position:
               
554-851
               

               
Cow position:
               
chr28:29952591-29952891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
556-919
               

               
Cow position:
               
chr28:11209276-11209659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 177
               

               
Conread position:
               
557-778
               

               
Cow position:
               
chr28:5709080-5709305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
76, 98
               

               
Conread position:
               
557-813
               

               
Cow position:
               
chr28:8124464-8124208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
558-732
               

               
Cow position:
               
chr28:3496897-3496729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
558-798
               

               
Cow position:
               
chr28:742745-742982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr28:22833442-22833687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr28:23605870-23605618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
77, 205
               

               
Conread position:
               
558-819
               

               
Cow position:
               
chr28:12083017-12082752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 200
               

               
Conread position:
               
558-921
               

               
Cow position:
               
chr28:1435480-1435108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
558-921
               

               
Cow position:
               
chr28:13773562-13773190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
595-918
               

               
Cow position:
               
chr28:5137708-5138036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
36, 137
               

               
Conread position:
               
601-813
               

               
Cow position:
               
chr28:23011005-23011219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
630-861
               

               
Cow position:
               
chr28:1272963-1272739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
656-813
               

               
Cow position:
               
chr28:11855701-11855857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 96
               

               
Conread position:
               
661-908
               

               
Cow position:
               
chr28:4563907-4564159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
730-923
               

               
Cow position:
               
chr28:5709348-5709532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr28:18714158-18714323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
762-908
               

               
Cow position:
               
chr28:11095831-11095678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
548-804
               

               
Cow position:
               
chr29:20608372-20608635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
555-806
               

               
Cow position:
               
chr29:42498560-42498811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
78, 102
               

               
Conread position:
               
556-921
               

               
Cow position:
               
chr29:4885187-4885559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 102
               

               
Conread position:
               
557-807
               

               
Cow position:
               
chr29:14145568-14145820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 103
               

               
Conread position:
               
558-704
               

               
Cow position:
               
chr29:12044426-12044577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
558-733
               

               
Cow position:
               
chr29:886618-886801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
558-763
               

               
Cow position:
               
chr29:41022146-41021944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr29:9409782-9409413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 64
               

               
Conread position:
               
573-806
               

               
Cow position:
               
chr29:4766913-4766676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 100
               

               
Conread position:
               
584-924
               

               
Cow position:
               
chr29:10118313-10118646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
729-896
               

               
Cow position:
               
chr29:41345437-41345609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
745-923
               

               
Cow position:
               
chr29:41021940-41021754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
752-920
               

               
Cow position:
               
chr29:1627379-1627552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
754-920
               

               
Cow position:
               
chr29:26946287-26946115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chr29:37986910-37987081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
760-921
               

               
Cow position:
               
chr29:29783470-29783638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr29:3335818-3335985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
549-898
               

               
Cow position:
               
chr7:40708836-40708489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 209
               

               
Conread position:
               
553-918
               

               
Cow position:
               
chr7:55696886-55697255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
554-924
               

               
Cow position:
               
chr7:11430939-11431304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
555-807
               

               
Cow position:
               
chr7:19188217-19188471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 88
               

               
Conread position:
               
556-813
               

               
Cow position:
               
chr7:6008332-6008590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
77, 99
               

               
Conread position:
               
557-919
               

               
Cow position:
               
chr7:28895201-28894836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
557-924
               

               
Cow position:
               
chr7:49211997-49211624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 101
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr7:38094485-38094731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 34
               

               
Conread position:
               
558-872
               

               
Cow position:
               
chr7:4722254-4722568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr7:14869017-14869394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 196
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr7:16491457-16491834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
558-923
               

               
Cow position:
               
chr7:23455946-23456306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
560-755
               

               
Cow position:
               
chr7:57006375-57006181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 52
               

               
Conread position:
               
567-923
               

               
Cow position:
               
chr7:2269991-2270357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
595-918
               

               
Cow position:
               
chr7:45598071-45598418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
597-742
               

               
Cow position:
               
chr7:25851468-25851620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
597-922
               

               
Cow position:
               
chr7:28004985-28005300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
674-924
               

               
Cow position:
               
chr7:1822854-1822614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
726-923
               

               
Cow position:
               
chr7:25851748-25851950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
751-922
               

               
Cow position:
               
chr7:16701842-16702010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
754-921
               

               
Cow position:
               
chr7:43899812-43899638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr7:45939689-45939860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
760-921
               

               
Cow position:
               
chr7:5026553-5026380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
760-923
               

               
Cow position:
               
chr7:32826441-32826609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
48, 123
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr7:47884633-47884470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
768-919
               

               
Cow position:
               
chr7:52896988-52896840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
780-923
               

               
Cow position:
               
chr7:17219944-17220094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
522-758
               

               
Cow position:
               
chr8:7853545-7853786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
536-813
               

               
Cow position:
               
chr8:44481213-44481505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 288
               

               
Conread position:
               
541-923
               

               
Cow position:
               
chr8:9804822-9804430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 55
               

               
Conread position:
               
547-813
               

               
Cow position:
               
chr8:6392719-6392989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
45, 225
               

               
Conread position:
               
552-813
               

               
Cow position:
               
chr8:9076267-9076521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 143
               

               
Conread position:
               
557-806
               

               
Cow position:
               
chr8:50703315-50703067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
558-740
               

               
Cow position:
               
chr8:61147726-61147538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
558-806
               

               
Cow position:
               
chr8:8725295-8725534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 60
               

               
Conread position:
               
558-918
               

               
Cow position:
               
chr8:47184299-47184673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 234
               

               
Conread position:
               
558-921
               

               
Cow position:
               
chr8:44483874-44484248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
558-921
               

               
Cow position:
               
chr8:51994030-51993666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
558-924
               

               
Cow position:
               
chr8:18715219-18714849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
566-849
               

               
Cow position:
               
chr8:34294293-34294007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
67, 142
               

               
Conread position:
               
566-921
               

               
Cow position:
               
chr8:57532748-57533126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
582-806
               

               
Cow position:
               
chr8:39003817-39004036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
630-924
               

               
Cow position:
               
chr8:48760963-48761264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 121
               

               
Conread position:
               
656-920
               

               
Cow position:
               
chr8:9826912-9826642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
754-918
               

               
Cow position:
               
chr8:54009428-54009598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 146
               

               
Conread position:
               
757-921
               

               
Cow position:
               
chr8:25582492-25582323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr8:13847548-13847386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr8:45857946-45858113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
762-923
               

               
Cow position:
               
chr8:1282129-1281966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
552-905
               

               
Cow position:
               
chr9:61140180-61139819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
557-922
               

               
Cow position:
               
chr9:11424916-11425280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
558-813
               

               
Cow position:
               
chr9:3380431-3380696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 157
               

               
Conread position:
               
558-850
               

               
Cow position:
               
chr9:17938099-17938393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
558-875
               

               
Cow position:
               
chr9:51768122-51767799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
559-921
               

               
Cow position:
               
chr9:48070632-48070240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
74, 206
               

               
Conread position:
               
560-922
               

               
Cow position:
               
chr9:53332365-53332736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 93
               

               
Conread position:
               
560-924
               

               
Cow position:
               
chr9:61446145-61445770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 192
               

               
Conread position:
               
567-924
               

               
Cow position:
               
chr9:30110888-30111252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
585-865
               

               
Cow position:
               
chr9:7148364-7148079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 164
               

               
Conread position:
               
597-811
               

               
Cow position:
               
chr9:1870479-1870695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
630-923
               

               
Cow position:
               
chr9:61312446-61312740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
741-887
               

               
Cow position:
               
chr9:21900096-21900250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
759-920
               

               
Cow position:
               
chr9:1020622-1020789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr9:10290554-10290383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr9:25574374-25574535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
759-921
               

               
Cow position:
               
chr9:51279660-51279828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
759-922
               

               
Cow position:
               
chr9:36425895-36426065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
761-921
               

               
Cow position:
               
chr9:46090830-46090659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
762-906
               

               
Cow position:
               
chr9:26525530-26525681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr9:21499917-21499756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
762-921
               

               
Cow position:
               
chr9:56082861-56082693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
555-815
               

               
Cow position:
               
chrX:46566990-46566724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
557-806
               

               
Cow position:
               
chrX:40312571-40312317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 162
               

               
Conread position:
               
557-879
               

               
Cow position:
               
chrX:18080783-18080460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 197
               

               
Conread position:
               
558-813
               

               
Cow position:
               
chrX:43713499-43713758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 196
               

               
Conread position:
               
559-920
               

               
Cow position:
               
chrX:28859350-28858984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
566-810
               

               
Cow position:
               
chrX:21245720-21245973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
605-924
               

               
Cow position:
               
chrX:29035684-29036030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
755-923
               

               
Cow position:
               
chrX:22436866-22437041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
759-923
               

               
Cow position:
               
chrX:45570032-45569866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
761-916
               

               
Cow position:
               
chrX:33159231-33159071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 155
               

               
Conread position:
               
765-920
               

               
Cow position:
               
chrX:40316032-40315871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
770-919
               

               
Cow position:
               
chrX:29815975-29815829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
770-921
               

               
Cow position:
               
chrX:16893762-16893608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
38, 29