Cow genome map
| Conread name: | Ss1.1-rcki22_c23.5 |
| Conread position: | 1-145 |
| Cow position: | chr1:69374525-69374381 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 125 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-147 |
| Cow position: | chr1:6621235-6621378 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 6-146 |
| Cow position: | chr1:30516662-30516802 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 125 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-145 |
| Cow position: | chr10:69639827-69639686 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-146 |
| Cow position: | chr10:15825586-15825441 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 130 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr10:45270163-45270308 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr11:7724478-7724623 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 129 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr11:43058161-43058306 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr11:68581980-68581835 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 130 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-147 |
| Cow position: | chr11:82946979-82947123 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 33-146 |
| Cow position: | chr11:16255176-16255289 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-151 |
| Cow position: | chr12:1673856-1674005 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 136 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 1-158 |
| Cow position: | chr12:1662431-1662589 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 3-146 |
| Cow position: | chr12:30861485-30861342 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 127 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-152 |
| Cow position: | chr12:1635934-1635802 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-146 |
| Cow position: | chr13:7599165-7599310 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 126 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-146 |
| Cow position: | chr13:52263613-52263469 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-146 |
| Cow position: | chr13:42559945-42560047 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr15:11070160-11070015 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr15:14106375-14106520 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 130 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-147 |
| Cow position: | chr15:46718026-46717882 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 128 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-146 |
| Cow position: | chr15:35506850-35506716 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 122 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-146 |
| Cow position: | chr16:49011788-49011645 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 129 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr16:49773720-49773860 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 125 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr16:52573577-52573717 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 128 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr17:36084182-36084042 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 127 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-145 |
| Cow position: | chr18:46143615-46143754 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 126 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr19:6987463-6987321 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-146 |
| Cow position: | chr19:29154360-29154505 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 132 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr19:41834949-41834804 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 128 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr2:58003100-58002955 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 128 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr2:9225318-9225458 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 124 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr20:37397915-37397770 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 130 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-146 |
| Cow position: | chr20:28491757-28491900 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 126 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr22:41852595-41852450 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 129 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-146 |
| Cow position: | chr22:41962329-41962477 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-145 |
| Cow position: | chr23:24185967-24186111 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr23:5740772-5740627 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 130 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr23:24170777-24170922 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 135 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr23:24223492-24223637 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 134 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-150 |
| Cow position: | chr23:26338032-26338181 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 128 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-151 |
| Cow position: | chr23:26341080-26340930 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-146 |
| Cow position: | chr23:35659511-35659655 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 127 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-147 |
| Cow position: | chr23:25804278-25804422 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 129 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-383 |
| Cow position: | chr23:24235400-24235642 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 230 |
| Conread position: | 1-146 |
| Cow position: | chr24:40172846-40172991 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-146 |
| Cow position: | chr26:29165765-29165859 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr27:26613942-26614087 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 128 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr27:27865623-27865768 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 130 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-146 |
| Cow position: | chr28:27049905-27050047 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 126 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-146 |
| Cow position: | chr29:1839083-1839226 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 129 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr3:62478195-62478050 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 136 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:17592140-17592286 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 137 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:17614677-17614823 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 136 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:17624519-17624373 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 137 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:17645655-17645801 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 129 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:62430807-62430661 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 135 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:62448813-62448959 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr3:62459033-62458887 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 132 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-145 |
| Cow position: | chr3:1077691-1077833 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 128 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-146 |
| Cow position: | chr3:56588624-56588754 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-146 |
| Cow position: | chr4:35724450-35724305 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 129 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-147 |
| Cow position: | chr4:64390703-64390847 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr4:15925757-15925617 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 127 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr5:31548387-31548532 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr5:13917135-13916995 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 128 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-146 |
| Cow position: | chr5:8026503-8026396 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-146 |
| Cow position: | chr5:45989721-45989640 (view UCSC Genome Browser custom track) |
| Alignm length: | 82 |
| Alignm identity: | 74 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr6:39755599-39755454 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr6:39764324-39764179 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 134 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr6:56962405-56962551 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 132 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 3-146 |
| Cow position: | chr6:7483872-7484015 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 126 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr6:20715652-20715792 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 123 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr7:13894541-13894396 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr7:2958155-2958301 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr8:11335178-11335033 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 129 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-146 |
| Cow position: | chr8:36912060-36911917 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 125 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr9:36521401-36521256 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 130 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chr9:35746176-35746316 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 124 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-146 |
| Cow position: | chrX:6378078-6378221 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 130 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-146 |
| Cow position: | chrX:22916206-22916066 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 126 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |