Cow genome map
| Conread name: | Ss1.1-recc2812c_p13.5 |
| Conread position: | 31-411 |
| Cow position: | chr1:69374744-69374382 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 104-411 |
| Cow position: | chr1:30516493-30516800 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-417 |
| Cow position: | chr1:6621086-6621381 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 31-411 |
| Cow position: | chr10:15825823-15825443 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr10:45269929-45270306 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 31-411 |
| Cow position: | chr10:69640064-69639687 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 31-411 |
| Cow position: | chr11:7724241-7724621 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr11:43057924-43058304 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-411 |
| Cow position: | chr11:68582205-68581837 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-426 |
| Cow position: | chr11:82946831-82947135 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 300-411 |
| Cow position: | chr11:16255176-16255287 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-463 |
| Cow position: | chr12:1662187-1662625 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 0 |
| Conread position: | 31-411 |
| Cow position: | chr12:30861724-30861344 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-486 |
| Cow position: | chr12:1673621-1674078 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 443 |
| Conread position: | 31-320 |
| Cow position: | chr13:27850668-27850378 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 31-411 |
| Cow position: | chr13:7598934-7599308 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 31-411 |
| Cow position: | chr13:52263851-52263471 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-411 |
| Cow position: | chr13:42559945-42560045 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr15:35507084-35506718 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 32-411 |
| Cow position: | chr15:11070396-11070017 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-411 |
| Cow position: | chr15:14106155-14106518 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-458 |
| Cow position: | chr15:46718116-46717840 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 248 |
| Conread position: | 31-411 |
| Cow position: | chr16:49012027-49011647 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr16:49773478-49773858 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr16:52573336-52573715 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 31-411 |
| Cow position: | chr17:36084424-36084044 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr18:46143376-46143753 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 31-411 |
| Cow position: | chr19:6987699-6987323 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 31-411 |
| Cow position: | chr19:29154123-29154503 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr19:41835183-41834806 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 31-411 |
| Cow position: | chr2:58003334-58002957 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 203-411 |
| Cow position: | chr2:9225248-9225456 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr20:28491519-28491898 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 144-389 |
| Cow position: | chr20:5115426-5115671 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-411 |
| Cow position: | chr20:37397972-37397772 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-411 |
| Cow position: | chr22:41852829-41852452 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-411 |
| Cow position: | chr22:41962300-41962475 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 30-462 |
| Cow position: | chr23:24170539-24170979 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 383 |
| Conread position: | 30-463 |
| Cow position: | chr23:24223254-24223695 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 383 |
| Conread position: | 33-460 |
| Cow position: | chr23:24185732-24186160 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 0 |
| Conread position: | 33-477 |
| Cow position: | chr23:25804041-25804483 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 395 |
| Conread position: | 63-476 |
| Cow position: | chr23:26337828-26338247 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 22 |
| Conread position: | 66-459 |
| Cow position: | chr23:26341281-26340882 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 12 |
| Conread position: | 222-411 |
| Cow position: | chr23:35659464-35659653 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 246-411 |
| Cow position: | chr23:5740794-5740629 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-411 |
| Cow position: | chr24:40172648-40172989 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-411 |
| Cow position: | chr27:26613730-26614085 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-411 |
| Cow position: | chr27:27865541-27865766 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 274-411 |
| Cow position: | chr28:27049908-27050045 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr29:1838844-1839224 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-475 |
| Cow position: | chr3:62431051-62430599 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 0 |
| Conread position: | 26-420 |
| Cow position: | chr3:17645413-17645808 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 0 |
| Conread position: | 29-475 |
| Cow position: | chr3:62478434-62477986 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 0 |
| Conread position: | 31-409 |
| Cow position: | chr3:1077453-1077830 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 32-422 |
| Cow position: | chr3:62459269-62458879 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-463 |
| Cow position: | chr3:62448577-62449017 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 0 |
| Conread position: | 33-414 |
| Cow position: | chr3:17591905-17592286 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-414 |
| Cow position: | chr3:17614442-17614823 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-414 |
| Cow position: | chr3:17624754-17624373 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 282-411 |
| Cow position: | chr3:56588625-56588752 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 31-411 |
| Cow position: | chr4:15925999-15925619 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 174-426 |
| Cow position: | chr4:64390607-64390859 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-411 |
| Cow position: | chr4:35724457-35724307 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chr5:13917377-13916997 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-411 |
| Cow position: | chr5:31548158-31548530 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-462 |
| Cow position: | chr6:39755838-39755404 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 397 |
| Conread position: | 31-411 |
| Cow position: | chr6:56962168-56962549 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 32-411 |
| Cow position: | chr6:7483635-7484013 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 32-459 |
| Cow position: | chr6:39764560-39764126 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 0 |
| Conread position: | 63-411 |
| Cow position: | chr6:20715442-20715790 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-331 |
| Cow position: | chr6:37164862-37165007 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-528 |
| Cow position: | chr7:2957904-2958420 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 31-411 |
| Cow position: | chr7:13894778-13894398 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-460 |
| Cow position: | chr7:2968531-2968201 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 174-411 |
| Cow position: | chr8:11335272-11335035 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-411 |
| Cow position: | chr8:36912090-36911919 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-411 |
| Cow position: | chr9:36521605-36521258 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 170-411 |
| Cow position: | chr9:35746073-35746314 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-411 |
| Cow position: | chrX:6377839-6378219 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-410 |
| Cow position: | chrX:15369275-15369613 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 141-411 |
| Cow position: | chrX:22916338-22916068 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-381 |
| Cow position: | chrX:16572718-16572502 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |