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Cow genome map

           
Conread name:
           
Ss1.1-rece21c_c9.5
        

               
Conread position:
               
5-655
               

               
Cow position:
               
chr10:8996870-8996220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 171
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr10:8996449-8996035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr10:21939101-21938689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
256, 239
               

               
Conread position:
               
7-582
               

               
Cow position:
               
chr10:8996616-8996041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 231
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr10:8996700-8996052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 170
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr10:8996784-8996136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
397, 391
               

               
Conread position:
               
8-236
               

               
Cow position:
               
chr10:9010091-9009863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
169, 164
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr10:9010511-9009864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
144, 138
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr10:21939337-21938706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 113
               

               
Conread position:
               
19-498
               

               
Cow position:
               
chr10:21939172-21938695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
240, 219
               

               
Conread position:
               
44-655
               

               
Cow position:
               
chr10:9010559-9009948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
211, 215
               

               
Conread position:
               
52-582
               

               
Cow position:
               
chr10:21939223-21938695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
471, 0
               

               
Conread position:
               
92-671
               

               
Cow position:
               
chr10:21939337-21938773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
521, 100
               

               
Conread position:
               
113-694
               

               
Cow position:
               
chr10:9010574-9009993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
4-488
               

               
Cow position:
               
chr11:74554710-74554226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr11:74554877-74554227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 233
               

               
Conread position:
               
6-451
               

               
Cow position:
               
chr11:74554624-74554179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
144, 140
               

               
Conread position:
               
6-573
               

               
Cow position:
               
chr11:74554792-74554225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 308
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr11:74554960-74554312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
6-710
               

               
Cow position:
               
chr11:74555044-74554341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 139
               

               
Conread position:
               
7-274
               

               
Cow position:
               
chr11:50368544-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
31-655
               

               
Cow position:
               
chr11:74555103-74554479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
582, 587
               

               
Conread position:
               
40-385
               

               
Cow position:
               
chr11:50368595-50368248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 0
               

               
Conread position:
               
133-442
               

               
Cow position:
               
chr11:50368586-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
115, 119
               

               
Conread position:
               
218-526
               

               
Cow position:
               
chr11:50368585-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
301-610
               

               
Cow position:
               
chr11:50368586-50368277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
379-695
               

               
Cow position:
               
chr11:50368592-50368276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
288, 278
               

               
Conread position:
               
419-571
               

               
Cow position:
               
chr11:8978569-8978417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-633
               

               
Cow position:
               
chr13:24162459-24163090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 82
               

               
Conread position:
               
3-459
               

               
Cow position:
               
chr13:39930705-39931159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
436, 0
               

               
Conread position:
               
3-611
               

               
Cow position:
               
chr13:24162796-24163404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 195
               

               
Conread position:
               
3-628
               

               
Cow position:
               
chr13:22125070-22125695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 195
               

               
Conread position:
               
3-651
               

               
Cow position:
               
chr13:22124902-22125551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 61
               

               
Conread position:
               
3-651
               

               
Cow position:
               
chr13:22125238-22125887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 189
               

               
Conread position:
               
3-651
               

               
Cow position:
               
chr13:24162628-24163277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 61
               

               
Conread position:
               
3-651
               

               
Cow position:
               
chr13:24162964-24163613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 189
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr13:22125154-22125806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 327
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr13:24162712-24163364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 495
               

               
Conread position:
               
7-506
               

               
Cow position:
               
chr13:22125410-22125909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 141
               

               
Conread position:
               
7-506
               

               
Cow position:
               
chr13:24163136-24163635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
134, 141
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr13:24162884-24163533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 323
               

               
Conread position:
               
8-341
               

               
Cow position:
               
chr13:22125579-22125912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
133, 140
               

               
Conread position:
               
8-341
               

               
Cow position:
               
chr13:24163305-24163638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
133, 140
               

               
Conread position:
               
8-645
               

               
Cow position:
               
chr13:22124823-22125460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 140
               

               
Conread position:
               
8-645
               

               
Cow position:
               
chr13:24162549-24163186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 140
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr13:22124991-22125638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
485, 490
               

               
Conread position:
               
9-558
               

               
Cow position:
               
chr13:39930627-39931174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
396, 401
               

               
Conread position:
               
20-593
               

               
Cow position:
               
chr13:22125339-22125912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
20-593
               

               
Cow position:
               
chr13:24163065-24163638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 142
               

               
Conread position:
               
50-645
               

               
Cow position:
               
chr13:22124697-22125292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 37
               

               
Conread position:
               
50-645
               

               
Cow position:
               
chr13:24162423-24163018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 37
               

               
Conread position:
               
93-634
               

               
Cow position:
               
chr13:39930627-39931166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 317
               

               
Conread position:
               
134-645
               

               
Cow position:
               
chr13:39930584-39931095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
251-655
               

               
Cow position:
               
chr13:22124730-22125134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
228, 233
               

               
Conread position:
               
251-655
               

               
Cow position:
               
chr13:24162456-24162860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 233
               

               
Conread position:
               
292-651
               

               
Cow position:
               
chr13:39930574-39930934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
302-655
               

               
Cow position:
               
chr13:22124697-22125050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
259, 266
               

               
Conread position:
               
302-655
               

               
Cow position:
               
chr13:24162423-24162776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
259, 266
               

               
Conread position:
               
376-651
               

               
Cow position:
               
chr13:22124687-22124963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
269, 0
               

               
Conread position:
               
376-651
               

               
Cow position:
               
chr13:24162413-24162689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
137, 130
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr14:3061095-3060663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-694
               

               
Cow position:
               
chr14:3061431-3060738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 86
               

               
Conread position:
               
1-709
               

               
Cow position:
               
chr14:25895256-25895964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
504, 511
               

               
Conread position:
               
1-872
               

               
Cow position:
               
chr14:3080872-3079995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
885
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
661, 667
               

               
Conread position:
               
1-874
               

               
Cow position:
               
chr14:680365-681243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
882
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
662, 669
               

               
Conread position:
               
2-515
               

               
Cow position:
               
chr14:433869-434382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-598
               

               
Cow position:
               
chr14:3061262-3060666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-633
               

               
Cow position:
               
chr14:3101029-3100399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 142
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr14:3127458-3127235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr14:3079946-3079666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-442
               

               
Cow position:
               
chr14:3127710-3127271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-454
               

               
Cow position:
               
chr14:433954-434405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
441, 447
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr14:3061177-3060665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 241
               

               
Conread position:
               
3-575
               

               
Cow position:
               
chr14:680703-681275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 567
               

               
Conread position:
               
3-603
               

               
Cow position:
               
chr14:447649-448249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 168
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr14:3128130-3127478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 242
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr14:3155637-3156274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 194
               

               
Conread position:
               
3-694
               

               
Cow position:
               
chr14:3128046-3127355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
609, 615
               

               
Conread position:
               
3-701
               

               
Cow position:
               
chr14:3080366-3079668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
676, 654
               

               
Conread position:
               
3-709
               

               
Cow position:
               
chr14:3080450-3079744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 77
               

               
Conread position:
               
3-874
               

               
Cow position:
               
chr14:3080702-3079826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
883
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 235
               

               
Conread position:
               
4-655
               

               
Cow position:
               
chr14:3155722-3156358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 118
               

               
Conread position:
               
4-862
               

               
Cow position:
               
chr14:3061596-3060734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
870
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
666, 653
               

               
Conread position:
               
5-489
               

               
Cow position:
               
chr14:25910809-25911293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
175, 160
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr14:447567-448217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 240
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr14:3127960-3127310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
5-874
               

               
Cow position:
               
chr14:3080784-3079910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
878
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 243
               

               
Conread position:
               
6-367
               

               
Cow position:
               
chr14:3080027-3079666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-528
               

               
Cow position:
               
chr14:3155961-3156483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
6-579
               

               
Cow position:
               
chr14:3100940-3100369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
396, 53
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr14:3101105-3100461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 51
               

               
Conread position:
               
6-657
               

               
Cow position:
               
chr14:680286-680937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 130
               

               
Conread position:
               
6-668
               

               
Cow position:
               
chr14:3061510-3060846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 491
               

               
Conread position:
               
6-683
               

               
Cow position:
               
chr14:3155472-3156134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 245
               

               
Conread position:
               
6-709
               

               
Cow position:
               
chr14:3061678-3060975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 246
               

               
Conread position:
               
6-874
               

               
Cow position:
               
chr14:3080951-3080078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
878
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 71
               

               
Conread position:
               
6-874
               

               
Cow position:
               
chr14:3081036-3080162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
879
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
7-374
               

               
Cow position:
               
chr14:447905-448272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 231
               

               
Conread position:
               
7-458
               

               
Cow position:
               
chr14:3080110-3079657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 245
               

               
Conread position:
               
7-515
               

               
Cow position:
               
chr14:3127790-3127282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr14:25895682-25896330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
577, 586
               

               
Conread position:
               
8-449
               

               
Cow position:
               
chr14:3156047-3156488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-450
               

               
Cow position:
               
chr14:25860341-25860783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
315, 324
               

               
Conread position:
               
8-462
               

               
Cow position:
               
chr14:25877392-25877846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
315, 324
               

               
Conread position:
               
8-549
               

               
Cow position:
               
chr14:25895851-25896392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 402
               

               
Conread position:
               
8-577
               

               
Cow position:
               
chr14:3101187-3100623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
8-584
               

               
Cow position:
               
chr14:25836616-25837192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
408, 420
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr14:25860173-25860753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
156, 164
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr14:25877224-25877804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
240, 253
               

               
Conread position:
               
8-624
               

               
Cow position:
               
chr14:25877140-25877757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
8-633
               

               
Cow position:
               
chr14:3127873-3127248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr14:3061340-3060693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 321
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr14:25836112-25836759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
398, 403
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr14:25860089-25860736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr14:25876636-25877283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
329, 337
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr14:25895095-25895742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 402
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr14:25895515-25896162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 230
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr14:25895599-25896246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 169
               

               
Conread position:
               
8-683
               

               
Cow position:
               
chr14:25836196-25836871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 319
               

               
Conread position:
               
8-874
               

               
Cow position:
               
chr14:25895179-25896050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
879
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 76
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr14:438345-438581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
11-611
               

               
Cow position:
               
chr14:3155882-3156482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 131
               

               
Conread position:
               
15-633
               

               
Cow position:
               
chr14:680631-681249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-573
               

               
Cow position:
               
chr14:25877317-25877873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
147, 156
               

               
Conread position:
               
17-656
               

               
Cow position:
               
chr14:25836289-25836928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
191, 196
               

               
Conread position:
               
18-576
               

               
Cow position:
               
chr14:25895777-25896335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 219
               

               
Conread position:
               
18-633
               

               
Cow position:
               
chr14:25860015-25860630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
146, 156
               

               
Conread position:
               
18-693
               

               
Cow position:
               
chr14:25876562-25877237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
146, 155
               

               
Conread position:
               
18-694
               

               
Cow position:
               
chr14:25859931-25860607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
75, 65
               

               
Conread position:
               
18-709
               

               
Cow position:
               
chr14:25877066-25877756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
146, 156
               

               
Conread position:
               
19-598
               

               
Cow position:
               
chr14:433803-434381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 7
               

               
Conread position:
               
19-874
               

               
Cow position:
               
chr14:25894938-25895798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
873
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 218
               

               
Conread position:
               
20-320
               

               
Cow position:
               
chr14:663410-663110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
20-694
               

               
Cow position:
               
chr14:680216-680890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 163
               

               
Conread position:
               
20-694
               

               
Cow position:
               
chr14:25895023-25895697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 229
               

               
Conread position:
               
25-655
               

               
Cow position:
               
chr14:3061743-3061113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 233
               

               
Conread position:
               
26-455
               

               
Cow position:
               
chr14:3155408-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 304
               

               
Conread position:
               
34-655
               

               
Cow position:
               
chr14:447512-448133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
50-710
               

               
Cow position:
               
chr14:25876426-25877085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 36
               

               
Conread position:
               
52-416
               

               
Cow position:
               
chr14:663462-663098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
53-874
               

               
Cow position:
               
chr14:3128164-3127338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
830
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 359
               

               
Conread position:
               
56-655
               

               
Cow position:
               
chr14:25894894-25895490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 41
               

               
Conread position:
               
63-701
               

               
Cow position:
               
chr14:433762-434400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
101-499
               

               
Cow position:
               
chr14:663496-663099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
104-363
               

               
Cow position:
               
chr14:420636-420896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
139, 134
               

               
Conread position:
               
104-572
               

               
Cow position:
               
chr14:25910824-25911292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
110-539
               

               
Cow position:
               
chr14:3155408-3155837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 66
               

               
Conread position:
               
113-694
               

               
Cow position:
               
chr14:3155900-3156481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 125
               

               
Conread position:
               
123-514
               

               
Cow position:
               
chr14:31-425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
197-624
               

               
Cow position:
               
chr14:3155411-3155838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 301
               

               
Conread position:
               
220-584
               

               
Cow position:
               
chr14:663462-663098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
269-655
               

               
Cow position:
               
chr14:663496-663111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
133, 22
               

               
Conread position:
               
278-695
               

               
Cow position:
               
chr14:3155408-3155825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 391
               

               
Conread position:
               
283-699
               

               
Cow position:
               
chr14:447509-447925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
379, 386
               

               
Conread position:
               
360-694
               

               
Cow position:
               
chr14:3061744-3061410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
231, 236
               

               
Conread position:
               
446-702
               

               
Cow position:
               
chr14:3061742-3061487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
223, 210
               

               
Conread position:
               
3-441
               

               
Cow position:
               
chr15:19139096-19138658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 248
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr15:19138843-19138641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr15:48468843-48469277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
196, 148
               

               
Conread position:
               
5-673
               

               
Cow position:
               
chr15:48468498-48469172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
67, 73
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chr15:48468929-48469278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
139, 110
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr15:19139343-19138696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 92
               

               
Conread position:
               
19-515
               

               
Cow position:
               
chr15:19139163-19138668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 5
               

               
Conread position:
               
37-667
               

               
Cow position:
               
chr15:48468446-48469082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
119, 125
               

               
Conread position:
               
43-655
               

               
Cow position:
               
chr15:19139392-19138780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 190
               

               
Conread position:
               
83-609
               

               
Cow position:
               
chr15:19139184-19138658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 277
               

               
Conread position:
               
31-320
               

               
Cow position:
               
chr16:36865405-36865116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 123
               

               
Conread position:
               
50-577
               

               
Cow position:
               
chr16:36865650-36865111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
143, 215
               

               
Conread position:
               
1-655
               

               
Cow position:
               
chr17:44467498-44468152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 251
               

               
Conread position:
               
2-655
               

               
Cow position:
               
chr17:41440980-41440327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-655
               

               
Cow position:
               
chr17:41441064-41440411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 192
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr17:41440559-41440198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
356, 0
               

               
Conread position:
               
3-693
               

               
Cow position:
               
chr17:22552288-22551598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
4-626
               

               
Cow position:
               
chr17:41440810-41440188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 111
               

               
Conread position:
               
4-709
               

               
Cow position:
               
chr17:44467669-44468374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 234
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr17:45350849-45350579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
6-543
               

               
Cow position:
               
chr17:41440724-41440187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr17:41440892-41440243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 246
               

               
Conread position:
               
7-542
               

               
Cow position:
               
chr17:44467840-44468375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 231
               

               
Conread position:
               
7-694
               

               
Cow position:
               
chr17:44467588-44468275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 232
               

               
Conread position:
               
8-582
               

               
Cow position:
               
chr17:22452316-22451742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
240, 253
               

               
Conread position:
               
8-626
               

               
Cow position:
               
chr17:22499162-22498544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
244, 229
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr17:22552871-22552224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
243, 230
               

               
Conread position:
               
8-656
               

               
Cow position:
               
chr17:22552367-22551719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
142, 138
               

               
Conread position:
               
20-655
               

               
Cow position:
               
chr17:44467433-44468068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 218
               

               
Conread position:
               
23-358
               

               
Cow position:
               
chr17:45350916-45350581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
237, 218
               

               
Conread position:
               
32-655
               

               
Cow position:
               
chr17:41441118-41440495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 252
               

               
Conread position:
               
35-688
               

               
Cow position:
               
chr17:44467364-44468020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 203
               

               
Conread position:
               
101-655
               

               
Cow position:
               
chr17:22452391-22451837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
63, 73
               

               
Conread position:
               
110-661
               

               
Cow position:
               
chr17:22553105-22552554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
141, 135
               

               
Conread position:
               
118-444
               

               
Cow position:
               
chr17:45350905-45350579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
204, 212
               

               
Conread position:
               
202-655
               

               
Cow position:
               
chr17:44467363-44467816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
395, 390
               

               
Conread position:
               
203-528
               

               
Cow position:
               
chr17:45350904-45350579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
203-712
               

               
Cow position:
               
chr17:41441115-41440609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 49
               

               
Conread position:
               
276-611
               

               
Cow position:
               
chr17:45350914-45350580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
303, 7
               

               
Conread position:
               
1-651
               

               
Cow position:
               
chr18:49033407-49032757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 82
               

               
Conread position:
               
1-654
               

               
Cow position:
               
chr18:53610408-53609755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 251
               

               
Conread position:
               
2-542
               

               
Cow position:
               
chr18:49032649-49032110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 6
               

               
Conread position:
               
2-574
               

               
Cow position:
               
chr18:43175127-43174556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
2-594
               

               
Cow position:
               
chr18:40306734-40307326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 6
               

               
Conread position:
               
3-288
               

               
Cow position:
               
chr18:55497309-55497022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
198, 178
               

               
Conread position:
               
3-513
               

               
Cow position:
               
chr18:40075169-40075678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
3-591
               

               
Cow position:
               
chr18:56493906-56494493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 5
               

               
Conread position:
               
3-598
               

               
Cow position:
               
chr18:55066965-55066370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr18:33064625-33063974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr18:42693987-42693335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr18:53635982-53635332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 5
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:33064289-33063637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
236, 249
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:33064540-33063889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
610, 5
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:40306650-40307302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:49033237-49032585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 249
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr18:56329958-56329306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 166
               

               
Conread position:
               
3-694
               

               
Cow position:
               
chr18:49033069-49032378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr18:56316867-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chr18:56329285-56328842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 79
               

               
Conread position:
               
4-570
               

               
Cow position:
               
chr18:51400594-51401161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
556, 0
               

               
Conread position:
               
4-874
               

               
Cow position:
               
chr18:56330041-56329166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
881
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
659, 666
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr18:44817888-44818190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
226, 235
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr18:52011876-52011568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-506
               

               
Cow position:
               
chr18:1418065-1418566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
61, 57
               

               
Conread position:
               
5-549
               

               
Cow position:
               
chr18:49022709-49023253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
203, 221
               

               
Conread position:
               
5-549
               

               
Cow position:
               
chr18:53610236-53609693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 233
               

               
Conread position:
               
5-597
               

               
Cow position:
               
chr18:40075086-40075678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
5-597
               

               
Cow position:
               
chr18:53560241-53560829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
401, 410
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr18:50059392-50058742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr18:56329704-56329054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
488, 498
               

               
Conread position:
               
5-656
               

               
Cow position:
               
chr18:50059560-50058909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
6-275
               

               
Cow position:
               
chr18:56267396-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
242, 246
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chr18:54668631-54668348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 123
               

               
Conread position:
               
6-454
               

               
Cow position:
               
chr18:55497474-55497028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 193
               

               
Conread position:
               
6-514
               

               
Cow position:
               
chr18:56493992-56494500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
334, 340
               

               
Conread position:
               
6-515
               

               
Cow position:
               
chr18:53586515-53586006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
67, 77
               

               
Conread position:
               
6-515
               

               
Cow position:
               
chr18:55066878-55066369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
6-537
               

               
Cow position:
               
chr18:50281822-50282353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 326
               

               
Conread position:
               
6-540
               

               
Cow position:
               
chr18:56391367-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 248
               

               
Conread position:
               
6-541
               

               
Cow position:
               
chr18:56316533-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
466, 461
               

               
Conread position:
               
6-570
               

               
Cow position:
               
chr18:50048907-50048344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
161, 137
               

               
Conread position:
               
6-573
               

               
Cow position:
               
chr18:42675257-42674690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
6-582
               

               
Cow position:
               
chr18:49022292-49022866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
369, 306
               

               
Conread position:
               
6-588
               

               
Cow position:
               
chr18:55067046-55066464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
6-591
               

               
Cow position:
               
chr18:53559738-53560323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 123
               

               
Conread position:
               
6-611
               

               
Cow position:
               
chr18:56391451-56390846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 316
               

               
Conread position:
               
6-633
               

               
Cow position:
               
chr18:56329451-56328823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 307
               

               
Conread position:
               
6-646
               

               
Cow position:
               
chr18:56391535-56390895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 407
               

               
Conread position:
               
6-648
               

               
Cow position:
               
chr18:49032814-49032172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
6-648
               

               
Cow position:
               
chr18:53586935-53586293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 255
               

               
Conread position:
               
6-651
               

               
Cow position:
               
chr18:49033150-49032505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 393
               

               
Conread position:
               
6-652
               

               
Cow position:
               
chr18:52012211-52011565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
590, 586
               

               
Conread position:
               
6-653
               

               
Cow position:
               
chr18:53586683-53586036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 186
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:40306401-40307049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:52012461-52011815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:53559822-53560470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-654
               

               
Cow position:
               
chr18:56128185-56128833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:33064370-33063721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
157, 169
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:33064454-33063805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
237, 232
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:40306485-40307134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
405, 392
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:49032898-49032249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 141
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:52012379-52011730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:53635896-53635247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
607, 612
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr18:56329535-56328886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 330
               

               
Conread position:
               
6-681
               

               
Cow position:
               
chr18:22843966-22843282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 326
               

               
Conread position:
               
6-681
               

               
Cow position:
               
chr18:53586851-53586176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
203, 185
               

               
Conread position:
               
6-683
               

               
Cow position:
               
chr18:47846705-47846028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 148
               

               
Conread position:
               
6-694
               

               
Cow position:
               
chr18:56329619-56328931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 252
               

               
Conread position:
               
6-873
               

               
Cow position:
               
chr18:56128269-56129140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
675, 651
               

               
Conread position:
               
7-289
               

               
Cow position:
               
chr18:56391921-56391642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
269, 0
               

               
Conread position:
               
7-349
               

               
Cow position:
               
chr18:56267479-56267137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-449
               

               
Cow position:
               
chr18:47846452-47846010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
398, 404
               

               
Conread position:
               
7-458
               

               
Cow position:
               
chr18:53635475-53635025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
252, 238
               

               
Conread position:
               
7-486
               

               
Cow position:
               
chr18:51765429-51764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
247, 254
               

               
Conread position:
               
7-572
               

               
Cow position:
               
chr18:33064705-33064140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 139
               

               
Conread position:
               
7-590
               

               
Cow position:
               
chr18:53610318-53609735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 323
               

               
Conread position:
               
7-591
               

               
Cow position:
               
chr18:49032729-49032145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
399, 404
               

               
Conread position:
               
7-598
               

               
Cow position:
               
chr18:53635643-53635052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
585, 589
               

               
Conread position:
               
7-619
               

               
Cow position:
               
chr18:56316450-56317062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
573, 568
               

               
Conread position:
               
7-652
               

               
Cow position:
               
chr18:56128522-56129166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
585, 589
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr18:42791785-42792433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
7-701
               

               
Cow position:
               
chr18:42724607-42723913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 338
               

               
Conread position:
               
7-701
               

               
Cow position:
               
chr18:56316198-56316892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 247
               

               
Conread position:
               
7-709
               

               
Cow position:
               
chr18:33064873-33064171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
7-874
               

               
Cow position:
               
chr18:22844304-22843420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
888
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 326
               

               
Conread position:
               
8-402
               

               
Cow position:
               
chr18:50271695-50272088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
191, 184
               

               
Conread position:
               
8-404
               

               
Cow position:
               
chr18:54668713-54668315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 89
               

               
Conread position:
               
8-481
               

               
Cow position:
               
chr18:1418152-1418627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
8-491
               

               
Cow position:
               
chr18:50083768-50084250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
394, 390
               

               
Conread position:
               
8-504
               

               
Cow position:
               
chr18:49032560-49032064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-507
               

               
Cow position:
               
chr18:43168026-43168525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
8-570
               

               
Cow position:
               
chr18:50099041-50099603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
8-570
               

               
Cow position:
               
chr18:50099377-50099940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
64, 77
               

               
Conread position:
               
8-571
               

               
Cow position:
               
chr18:50059137-50058574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
300, 308
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr18:44398373-44397793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
58, 54
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr18:47846619-47846039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 71
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr18:56316367-56316947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-611
               

               
Cow position:
               
chr18:55497640-55497037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
414, 422
               

               
Conread position:
               
8-625
               

               
Cow position:
               
chr18:50281740-50282357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
8-626
               

               
Cow position:
               
chr18:49032980-49032362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 338
               

               
Conread position:
               
8-632
               

               
Cow position:
               
chr18:42693562-42692938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 137
               

               
Conread position:
               
8-653
               

               
Cow position:
               
chr18:50083432-50084077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
605, 610
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:42791030-42791676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
310, 306
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:42792038-42792684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
310, 305
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:49033316-49032670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
564, 559
               

               
Conread position:
               
8-654
               

               
Cow position:
               
chr18:53587017-53586371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
569, 579
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:33064788-33064141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 69
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:42791450-42792097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 5
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:42792122-42792769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:53635726-53635079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
505, 500
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:56128439-56129086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
505, 500
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr18:56329869-56329222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 403
               

               
Conread position:
               
8-656
               

               
Cow position:
               
chr18:50022508-50021854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
8-657
               

               
Cow position:
               
chr18:50099545-50100194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 60
               

               
Conread position:
               
8-671
               

               
Cow position:
               
chr18:53610485-53609823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 53
               

               
Conread position:
               
8-694
               

               
Cow position:
               
chr18:42792206-42792892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
142, 137
               

               
Conread position:
               
8-708
               

               
Cow position:
               
chr18:40074921-40075621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
8-709
               

               
Cow position:
               
chr18:56330205-56329504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 413
               

               
Conread position:
               
8-715
               

               
Cow position:
               
chr18:56316283-56316988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
655, 662
               

               
Conread position:
               
9-634
               

               
Cow position:
               
chr18:42693813-42693189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
133, 139
               

               
Conread position:
               
12-590
               

               
Cow position:
               
chr18:1417988-1418566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
138, 134
               

               
Conread position:
               
12-655
               

               
Cow position:
               
chr18:53636058-53635415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-654
               

               
Cow position:
               
chr18:40306324-40306965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
137, 133
               

               
Conread position:
               
13-665
               

               
Cow position:
               
chr18:56316036-56316689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 225
               

               
Conread position:
               
14-655
               

               
Cow position:
               
chr18:56128109-56128750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
391, 400
               

               
Conread position:
               
15-645
               

               
Cow position:
               
chr18:53525681-53526311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
324, 331
               

               
Conread position:
               
16-667
               

               
Cow position:
               
chr18:53635802-53635152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
597, 602
               

               
Conread position:
               
17-453
               

               
Cow position:
               
chr18:42792467-42792903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-565
               

               
Cow position:
               
chr18:51368275-51367728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
251, 231
               

               
Conread position:
               
17-590
               

               
Cow position:
               
chr18:53635549-53634977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
527, 516
               

               
Conread position:
               
17-694
               

               
Cow position:
               
chr18:52012284-52011607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 222
               

               
Conread position:
               
18-506
               

               
Cow position:
               
chr18:42827397-42827884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
174, 6
               

               
Conread position:
               
18-610
               

               
Cow position:
               
chr18:53498303-53498895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
190, 166
               

               
Conread position:
               
19-576
               

               
Cow position:
               
chr18:49021480-49022033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
19-694
               

               
Cow position:
               
chr18:55497713-55497038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
641, 651
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr18:44817987-44818233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
168, 161
               

               
Conread position:
               
20-367
               

               
Cow position:
               
chr18:50030737-50030391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 220
               

               
Conread position:
               
20-530
               

               
Cow position:
               
chr18:47846523-47846013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
20-643
               

               
Cow position:
               
chr18:56316127-56316750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 370
               

               
Conread position:
               
20-874
               

               
Cow position:
               
chr18:56330109-56329250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
866
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 116
               

               
Conread position:
               
21-598
               

               
Cow position:
               
chr18:56493839-56494416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 183
               

               
Conread position:
               
22-571
               

               
Cow position:
               
chr18:54668951-54668402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
89, 56
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chr18:22843520-22843255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
249, 240
               

               
Conread position:
               
25-236
               

               
Cow position:
               
chr18:54687741-54687952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-655
               

               
Cow position:
               
chr18:42724672-42724043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
28-682
               

               
Cow position:
               
chr18:22844367-22843710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 224
               

               
Conread position:
               
29-624
               

               
Cow position:
               
chr18:50271464-50272060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
30-655
               

               
Cow position:
               
chr18:55067106-55066481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 32
               

               
Conread position:
               
31-654
               

               
Cow position:
               
chr18:50031061-50030436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
35-655
               

               
Cow position:
               
chr18:50848344-50848964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
166, 178
               

               
Conread position:
               
35-694
               

               
Cow position:
               
chr18:56391589-56390931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
37-455
               

               
Cow position:
               
chr18:56267533-56267113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 221
               

               
Conread position:
               
40-385
               

               
Cow position:
               
chr18:56391972-56391625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 0
               

               
Conread position:
               
40-436
               

               
Cow position:
               
chr18:54668765-54668369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
149, 141
               

               
Conread position:
               
42-523
               

               
Cow position:
               
chr18:54668847-54668362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
42-527
               

               
Cow position:
               
chr18:56267612-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
44-347
               

               
Cow position:
               
chr18:44818572-44818875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
44-391
               

               
Cow position:
               
chr18:44817843-44818190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
274, 284
               

               
Conread position:
               
44-655
               

               
Cow position:
               
chr18:50281692-50282303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
50-506
               

               
Cow position:
               
chr18:50295380-50295836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
50-527
               

               
Cow position:
               
chr18:49021675-49022153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
196, 209
               

               
Conread position:
               
64-588
               

               
Cow position:
               
chr18:44398401-44397877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 82
               

               
Conread position:
               
70-621
               

               
Cow position:
               
chr18:49022606-49023157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 94
               

               
Conread position:
               
81-681
               

               
Cow position:
               
chr18:52012470-52011872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
88-653
               

               
Cow position:
               
chr18:55523622-55524187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
235, 226
               

               
Conread position:
               
89-625
               

               
Cow position:
               
chr18:53586516-53585979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
522, 0
               

               
Conread position:
               
91-654
               

               
Cow position:
               
chr18:42791953-42792516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
395, 390
               

               
Conread position:
               
92-648
               

               
Cow position:
               
chr18:53559992-53560548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 109
               

               
Conread position:
               
103-648
               

               
Cow position:
               
chr18:55067117-55066572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
104-655
               

               
Cow position:
               
chr18:1417996-1418547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
104-709
               

               
Cow position:
               
chr18:53560088-53560692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
87, 93
               

               
Conread position:
               
104-870
               

               
Cow position:
               
chr18:33064860-33064088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 294
               

               
Conread position:
               
105-654
               

               
Cow position:
               
chr18:33064943-33064394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
140, 155
               

               
Conread position:
               
109-364
               

               
Cow position:
               
chr18:54687741-54687996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
113-654
               

               
Cow position:
               
chr18:42744714-42744173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 64
               

               
Conread position:
               
113-655
               

               
Cow position:
               
chr18:50271464-50272006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
114-655
               

               
Cow position:
               
chr18:49033378-49032837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 478
               

               
Conread position:
               
119-694
               

               
Cow position:
               
chr18:56391590-56391015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
544, 549
               

               
Conread position:
               
120-559
               

               
Cow position:
               
chr18:44817748-44818190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
133-442
               

               
Cow position:
               
chr18:56391963-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
115, 119
               

               
Conread position:
               
134-655
               

               
Cow position:
               
chr18:50083306-50083827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
352, 348
               

               
Conread position:
               
149-654
               

               
Cow position:
               
chr18:50059668-50059163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
156-655
               

               
Cow position:
               
chr18:51400242-51400741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-654
               

               
Cow position:
               
chr18:42694155-42693671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
173-655
               

               
Cow position:
               
chr18:53610571-53610090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
174-684
               

               
Cow position:
               
chr18:47846705-47846195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
163, 147
               

               
Conread position:
               
200-688
               

               
Cow position:
               
chr18:54668941-54668450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
202-655
               

               
Cow position:
               
chr18:56391591-56391138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 296
               

               
Conread position:
               
203-441
               

               
Cow position:
               
chr18:54664094-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
205-431
               

               
Cow position:
               
chr18:54687753-54687979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
208-611
               

               
Cow position:
               
chr18:56267530-56267127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
212-516
               

               
Cow position:
               
chr18:44944300-44944610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
218-526
               

               
Cow position:
               
chr18:56391962-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
219-657
               

               
Cow position:
               
chr18:54668838-54668400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
222-655
               

               
Cow position:
               
chr18:56267600-56267167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
243-431
               

               
Cow position:
               
chr18:54669624-54669436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
165, 172
               

               
Conread position:
               
249-526
               

               
Cow position:
               
chr18:44818609-44818886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-710
               

               
Cow position:
               
chr18:44817794-44818260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 412
               

               
Conread position:
               
253-525
               

               
Cow position:
               
chr18:54664061-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
257-655
               

               
Cow position:
               
chr18:40306232-40306630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 57
               

               
Conread position:
               
259-558
               

               
Cow position:
               
chr18:55442331-55442630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 65
               

               
Conread position:
               
260-576
               

               
Cow position:
               
chr18:50295254-50295570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
233, 240
               

               
Conread position:
               
276-681
               

               
Cow position:
               
chr18:22844371-22843963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
293-874
               

               
Cow position:
               
chr18:49033367-49032781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
418, 479
               

               
Conread position:
               
301-610
               

               
Cow position:
               
chr18:56391963-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
318-709
               

               
Cow position:
               
chr18:50281630-50282020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 80
               

               
Conread position:
               
344-623
               

               
Cow position:
               
chr18:44818620-44818899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 66
               

               
Conread position:
               
379-695
               

               
Cow position:
               
chr18:56391969-56391653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
288, 278
               

               
Conread position:
               
416-574
               

               
Cow position:
               
chr18:54669619-54669461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
418-656
               

               
Cow position:
               
chr18:53610495-53610257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 63
               

               
Conread position:
               
444-644
               

               
Cow position:
               
chr18:54664083-54664283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr19:20635577-20635033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 149
               

               
Conread position:
               
3-660
               

               
Cow position:
               
chr19:14940217-14940874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
189, 210
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr19:23597343-23597713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
246, 237
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr19:17615162-17615406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
6-449
               

               
Cow position:
               
chr19:23650038-23650481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
60, 56
               

               
Conread position:
               
6-531
               

               
Cow position:
               
chr19:23649954-23650479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 140
               

               
Conread position:
               
6-559
               

               
Cow position:
               
chr19:23597177-23597731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
400, 408
               

               
Conread position:
               
7-509
               

               
Cow position:
               
chr19:14940557-14941059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
241, 245
               

               
Conread position:
               
7-654
               

               
Cow position:
               
chr19:14940137-14940784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 320
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr19:14960076-14959444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
239, 252
               

               
Conread position:
               
8-573
               

               
Cow position:
               
chr19:14960325-14959764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
398, 167
               

               
Conread position:
               
8-611
               

               
Cow position:
               
chr19:23649872-23650475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 250
               

               
Conread position:
               
8-626
               

               
Cow position:
               
chr19:23597095-23597713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr19:23596930-23597574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr19:23649284-23649931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 142
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr19:23649368-23650015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
8-709
               

               
Cow position:
               
chr19:23649452-23650152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
398, 402
               

               
Conread position:
               
34-371
               

               
Cow position:
               
chr19:17615106-17615442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 70
               

               
Conread position:
               
44-654
               

               
Cow position:
               
chr19:23597047-23597657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 366
               

               
Conread position:
               
44-655
               

               
Cow position:
               
chr19:14940426-14941037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
569, 574
               

               
Conread position:
               
76-655
               

               
Cow position:
               
chr19:23596914-23597490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 116
               

               
Conread position:
               
92-432
               

               
Cow position:
               
chr19:14948401-14948061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
319, 306
               

               
Conread position:
               
136-430
               

               
Cow position:
               
chr19:17615124-17615418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
186, 199
               

               
Conread position:
               
212-508
               

               
Cow position:
               
chr19:17615116-17615412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
260-598
               

               
Cow position:
               
chr19:14948401-14948063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
156, 170
               

               
Conread position:
               
272-653
               

               
Cow position:
               
chr19:14948470-14948092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
320, 21
               

               
Conread position:
               
283-601
               

               
Cow position:
               
chr19:17615103-17615421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
85, 79
               

               
Conread position:
               
3-597
               

               
Cow position:
               
chr2:82799753-82800347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 145
               

               
Conread position:
               
3-645
               

               
Cow position:
               
chr2:5874786-5874145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
3-645
               

               
Cow position:
               
chr2:5875123-5874481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 61
               

               
Conread position:
               
3-710
               

               
Cow position:
               
chr2:82799586-82800291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
5-561
               

               
Cow position:
               
chr2:5874953-5874397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
6-358
               

               
Cow position:
               
chr2:82800092-82800444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
134, 141
               

               
Conread position:
               
6-582
               

               
Cow position:
               
chr2:82799840-82800416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 58
               

               
Conread position:
               
6-633
               

               
Cow position:
               
chr2:82799672-82800299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 169
               

               
Conread position:
               
7-611
               

               
Cow position:
               
chr2:82799505-82800109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 245
               

               
Conread position:
               
7-632
               

               
Cow position:
               
chr2:86465581-86466206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
8-645
               

               
Cow position:
               
chr2:5875034-5874397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 57
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr2:48689392-48689080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
250, 240
               

               
Conread position:
               
18-655
               

               
Cow position:
               
chr2:86465340-86465977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 45
               

               
Conread position:
               
19-444
               

               
Cow position:
               
chr2:82800021-82800446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
205, 212
               

               
Conread position:
               
20-648
               

               
Cow position:
               
chr2:86465006-86465634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
146, 134
               

               
Conread position:
               
26-655
               

               
Cow position:
               
chr2:86465516-86466145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
426, 418
               

               
Conread position:
               
44-645
               

               
Cow position:
               
chr2:5875166-5874565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 104
               

               
Conread position:
               
53-621
               

               
Cow position:
               
chr2:82799467-82800035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 199
               

               
Conread position:
               
64-655
               

               
Cow position:
               
chr2:86464966-86465557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
149, 129
               

               
Conread position:
               
114-655
               

               
Cow position:
               
chr2:5875180-5874638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
113, 126
               

               
Conread position:
               
116-579
               

               
Cow position:
               
chr2:48689538-48689075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
221-651
               

               
Cow position:
               
chr2:82799467-82799898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 375
               

               
Conread position:
               
287-642
               

               
Cow position:
               
chr2:48689535-48689180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 126
               

               
Conread position:
               
388-625
               

               
Cow position:
               
chr2:16555395-16555152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
388-655
               

               
Cow position:
               
chr2:48689517-48689251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
225, 102
               

               
Conread position:
               
20-530
               

               
Cow position:
               
chr20:6660994-6660484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
182, 134
               

               
Conread position:
               
104-614
               

               
Cow position:
               
chr20:6660994-6660484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
221-681
               

               
Cow position:
               
chr20:6660961-6660501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr21:12659645-12660003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 237
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr21:12608199-12607928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
245, 249
               

               
Conread position:
               
3-578
               

               
Cow position:
               
chr21:12608535-12607960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 249
               

               
Conread position:
               
3-624
               

               
Cow position:
               
chr21:12659395-12660016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 235
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr21:12608703-12608051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
403, 407
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr21:12608787-12608135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr21:12658891-12659543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr21:12659311-12659963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-694
               

               
Cow position:
               
chr21:12659059-12659750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 235
               

               
Conread position:
               
4-544
               

               
Cow position:
               
chr21:12659480-12660020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-655
               

               
Cow position:
               
chr21:12659228-12659879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
386, 380
               

               
Conread position:
               
4-874
               

               
Cow position:
               
chr21:12658976-12659851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
878
               

               
Alignm identity:
               
615
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
638, 632
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr21:12608615-12607967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 254
               

               
Conread position:
               
7-710
               

               
Cow position:
               
chr21:12608867-12608165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 6
               

               
Conread position:
               
8-453
               

               
Cow position:
               
chr21:34222988-34222543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
253, 241
               

               
Conread position:
               
26-874
               

               
Cow position:
               
chr21:12658830-12659683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
857
               

               
Alignm identity:
               
591
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
29-537
               

               
Cow position:
               
chr21:34223051-34222543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 151
               

               
Conread position:
               
50-649
               

               
Cow position:
               
chr21:12608908-12608309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 285
               

               
Conread position:
               
52-446
               

               
Cow position:
               
chr21:11852449-11852843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
149, 107
               

               
Conread position:
               
81-649
               

               
Cow position:
               
chr21:12658801-12659369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 163
               

               
Conread position:
               
104-614
               

               
Cow position:
               
chr21:11852333-11852843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
107-693
               

               
Cow position:
               
chr21:11852253-11852838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
110-655
               

               
Cow position:
               
chr21:34223135-34222593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
113-624
               

               
Cow position:
               
chr21:34223051-34222540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
95, 100
               

               
Conread position:
               
127-655
               

               
Cow position:
               
chr21:12608915-12608387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 273
               

               
Conread position:
               
167-655
               

               
Cow position:
               
chr21:12658803-12659291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 85
               

               
Conread position:
               
499-683
               

               
Cow position:
               
chr21:12658799-12658983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
181, 165
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr22:11641088-11641431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-593
               

               
Cow position:
               
chr22:12399362-12398775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
150, 140
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr22:11640668-11641317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 140
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr22:12385606-12384955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
7-488
               

               
Cow position:
               
chr22:11701164-11701645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
7-572
               

               
Cow position:
               
chr22:12432013-12431448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
233, 240
               

               
Conread position:
               
7-591
               

               
Cow position:
               
chr22:12458377-12457793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
165, 170
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chr22:12476326-12475678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 176
               

               
Conread position:
               
7-670
               

               
Cow position:
               
chr22:11640753-11641415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 57
               

               
Conread position:
               
8-192
               

               
Cow position:
               
chr22:12418627-12418443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 72
               

               
Conread position:
               
8-526
               

               
Cow position:
               
chr22:12418963-12418445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 190
               

               
Conread position:
               
8-570
               

               
Cow position:
               
chr22:12431592-12431030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
310, 303
               

               
Conread position:
               
8-577
               

               
Cow position:
               
chr22:12399444-12398875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
61, 71
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr22:12399528-12398881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
148, 155
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr22:12431928-12431281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
507, 517
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr22:12432096-12431449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr22:12498934-12499581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
402, 390
               

               
Conread position:
               
8-683
               

               
Cow position:
               
chr22:12458460-12457785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
319, 306
               

               
Conread position:
               
12-572
               

               
Cow position:
               
chr22:12458624-12458064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
227, 240
               

               
Conread position:
               
12-655
               

               
Cow position:
               
chr22:46654081-46654724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
17-458
               

               
Cow position:
               
chr22:12499531-12499972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
389, 393
               

               
Conread position:
               
17-460
               

               
Cow position:
               
chr22:11641015-11641458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
23-151
               

               
Cow position:
               
chr22:14293681-14293553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 47
               

               
Conread position:
               
25-572
               

               
Cow position:
               
chr22:11701098-11701645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
127, 121
               

               
Conread position:
               
26-547
               

               
Cow position:
               
chr22:11666445-11666966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
126, 120
               

               
Conread position:
               
44-620
               

               
Cow position:
               
chr22:12419011-12418435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 194
               

               
Conread position:
               
50-709
               

               
Cow position:
               
chr22:11640628-11641286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 120
               

               
Conread position:
               
109-655
               

               
Cow position:
               
chr22:11701098-11701644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
152, 142
               

               
Conread position:
               
110-572
               

               
Cow position:
               
chr22:11666445-11666907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
150, 136
               

               
Conread position:
               
134-564
               

               
Cow position:
               
chr22:12458586-12458156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
166-655
               

               
Cow position:
               
chr22:12476335-12475846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
238, 228
               

               
Conread position:
               
166-655
               

               
Cow position:
               
chr22:12498924-12499413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
236, 229
               

               
Conread position:
               
205-655
               

               
Cow position:
               
chr22:11666456-11666906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
272-588
               

               
Cow position:
               
chr22:12458532-12458216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
134, 151
               

               
Conread position:
               
301-655
               

               
Cow position:
               
chr22:12419006-12418652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
326-621
               

               
Cow position:
               
chr22:12498916-12499211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
244, 237
               

               
Conread position:
               
326-655
               

               
Cow position:
               
chr22:12476343-12476014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
244, 234
               

               
Conread position:
               
446-571
               

               
Cow position:
               
chr22:14293678-14293553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr23:25723984-25723713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
193, 179
               

               
Conread position:
               
6-507
               

               
Cow position:
               
chr23:25660213-25660714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
144, 140
               

               
Conread position:
               
6-626
               

               
Cow position:
               
chr23:24639446-24640066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
7-453
               

               
Cow position:
               
chr23:24560575-24560129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
8-557
               

               
Cow position:
               
chr23:24639532-24640081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
8-588
               

               
Cow position:
               
chr23:24536068-24535485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 207
               

               
Conread position:
               
17-515
               

               
Cow position:
               
chr23:24547173-24546675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
26-464
               

               
Cow position:
               
chr23:24626306-24626744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
44-597
               

               
Cow position:
               
chr23:25660167-25660720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 169
               

               
Conread position:
               
44-655
               

               
Cow position:
               
chr23:24547314-24546703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 208
               

               
Conread position:
               
50-710
               

               
Cow position:
               
chr23:24560868-24560209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 264
               

               
Conread position:
               
96-655
               

               
Cow position:
               
chr23:25660134-25660694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
8, 150
               

               
Conread position:
               
104-655
               

               
Cow position:
               
chr23:24639292-24639843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
92, 108
               

               
Conread position:
               
106-548
               

               
Cow position:
               
chr23:24626302-24626744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
110-582
               

               
Cow position:
               
chr23:25698574-25698102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 72
               

               
Conread position:
               
123-504
               

               
Cow position:
               
chr23:25724116-25723735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
212-578
               

               
Cow position:
               
chr23:25724111-25723745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
194, 199
               

               
Conread position:
               
221-656
               

               
Cow position:
               
chr23:24547305-24546870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
183, 177
               

               
Conread position:
               
291-654
               

               
Cow position:
               
chr23:25724116-25723753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr24:17077867-17077512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr24:17035478-17035017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
5-582
               

               
Cow position:
               
chr24:17035562-17034985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
147, 140
               

               
Conread position:
               
8-444
               

               
Cow position:
               
chr24:17077946-17077510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
144, 138
               

               
Conread position:
               
8-590
               

               
Cow position:
               
chr24:17078114-17077532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 138
               

               
Conread position:
               
8-693
               

               
Cow position:
               
chr24:17078282-17077597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 306
               

               
Conread position:
               
50-632
               

               
Cow position:
               
chr24:17070480-17071062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
114, 127
               

               
Conread position:
               
53-655
               

               
Cow position:
               
chr24:17078153-17077551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 345
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr25:23266966-23266512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
200, 178
               

               
Conread position:
               
1-459
               

               
Cow position:
               
chr25:34447246-34447704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
151, 145
               

               
Conread position:
               
1-537
               

               
Cow position:
               
chr25:326721-327263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 145
               

               
Conread position:
               
1-655
               

               
Cow position:
               
chr25:34762885-34763533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
1-874
               

               
Cow position:
               
chr25:25652664-25653539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
841
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
808, 0
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr25:427302-427564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-433
               

               
Cow position:
               
chr25:34473648-34474076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 171
               

               
Conread position:
               
2-539
               

               
Cow position:
               
chr25:23267523-23266993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 208
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr25:33529240-33529472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr25:34733951-34733719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-446
               

               
Cow position:
               
chr25:3664157-3664600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
3-508
               

               
Cow position:
               
chr25:3664073-3664579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
503, 0
               

               
Conread position:
               
3-582
               

               
Cow position:
               
chr25:34769897-34769319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 5
               

               
Conread position:
               
3-590
               

               
Cow position:
               
chr25:34732550-34731963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
245, 256
               

               
Conread position:
               
3-654
               

               
Cow position:
               
chr25:34769982-34769331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chr25:25652582-25653234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-685
               

               
Cow position:
               
chr25:25652498-25653180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr25:33530624-33530820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr25:24384937-24384701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
192, 199
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chr25:4657406-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
4-655
               

               
Cow position:
               
chr25:24385357-24384706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 247
               

               
Conread position:
               
4-661
               

               
Cow position:
               
chr25:33530120-33530777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 248
               

               
Conread position:
               
5-403
               

               
Cow position:
               
chr25:33529074-33529472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-446
               

               
Cow position:
               
chr25:24398843-24398405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 62
               

               
Conread position:
               
5-462
               

               
Cow position:
               
chr25:34769728-34769271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
243, 233
               

               
Conread position:
               
5-530
               

               
Cow position:
               
chr25:24398927-24398405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
133, 146
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr25:34762973-34763617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 146
               

               
Conread position:
               
5-655
               

               
Cow position:
               
chr25:34770148-34769498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
399, 393
               

               
Conread position:
               
6-179
               

               
Cow position:
               
chr25:34733864-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-488
               

               
Cow position:
               
chr25:24385187-24384705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 137
               

               
Conread position:
               
6-576
               

               
Cow position:
               
chr25:33157328-33156758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 337
               

               
Conread position:
               
6-582
               

               
Cow position:
               
chr25:33157412-33156836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 232
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr25:25652333-25652982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-656
               

               
Cow position:
               
chr25:33298876-33299526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 253
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr25:427391-427575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-205
               

               
Cow position:
               
chr25:34473902-34474100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr25:33127948-33128231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
143, 136
               

               
Conread position:
               
7-365
               

               
Cow position:
               
chr25:33530459-33530817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-372
               

               
Cow position:
               
chr25:33506810-33507174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 327
               

               
Conread position:
               
7-614
               

               
Cow position:
               
chr25:3663993-3664600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 220
               

               
Conread position:
               
7-684
               

               
Cow position:
               
chr25:25652250-25652930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
656, 0
               

               
Conread position:
               
8-286
               

               
Cow position:
               
chr25:3636247-3635969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-337
               

               
Cow position:
               
chr25:33529161-33529490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-345
               

               
Cow position:
               
chr25:22235976-22236313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
230, 244
               

               
Conread position:
               
8-387
               

               
Cow position:
               
chr25:3676055-3676432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 320
               

               
Conread position:
               
8-403
               

               
Cow position:
               
chr25:3636415-3636020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-459
               

               
Cow position:
               
chr25:33305339-33304893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
240, 21
               

               
Conread position:
               
8-541
               

               
Cow position:
               
chr25:34473570-34474100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 237
               

               
Conread position:
               
8-611
               

               
Cow position:
               
chr25:34763141-34763741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 240
               

               
Conread position:
               
8-621
               

               
Cow position:
               
chr25:326560-327179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 61
               

               
Conread position:
               
8-622
               

               
Cow position:
               
chr25:33299214-33299828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
397, 402
               

               
Conread position:
               
8-645
               

               
Cow position:
               
chr25:34763060-34763691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
8-649
               

               
Cow position:
               
chr25:36800694-36801335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 161
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr25:25652419-25653066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr25:34770061-34769414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 138
               

               
Conread position:
               
8-656
               

               
Cow position:
               
chr25:33298626-33299274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 159
               

               
Conread position:
               
8-656
               

               
Cow position:
               
chr25:33298962-33299610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-656
               

               
Cow position:
               
chr25:33299046-33299694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-655
               

               
Cow position:
               
chr25:36800611-36801257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
10-596
               

               
Cow position:
               
chr25:22940535-22939949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
69, 59
               

               
Conread position:
               
16-370
               

               
Cow position:
               
chr25:3636323-3635969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
322, 327
               

               
Conread position:
               
16-615
               

               
Cow position:
               
chr25:24399000-24398404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
18-456
               

               
Cow position:
               
chr25:4657476-4657038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-313
               

               
Cow position:
               
chr25:22941303-22941009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
66, 55
               

               
Conread position:
               
19-533
               

               
Cow position:
               
chr25:33530303-33530817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 302
               

               
Conread position:
               
19-572
               

               
Cow position:
               
chr25:24385258-24384705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
20-233
               

               
Cow position:
               
chr25:22941218-22941005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-415
               

               
Cow position:
               
chr25:36844545-36844163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
20-531
               

               
Cow position:
               
chr25:3636487-3635976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 206
               

               
Conread position:
               
20-610
               

               
Cow position:
               
chr25:33530220-33530810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-656
               

               
Cow position:
               
chr25:33298722-33299358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
22-446
               

               
Cow position:
               
chr25:33506741-33507166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 397
               

               
Conread position:
               
22-655
               

               
Cow position:
               
chr25:25652181-25652814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 216
               

               
Conread position:
               
23-442
               

               
Cow position:
               
chr25:3675986-3676405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 236
               

               
Conread position:
               
23-774
               

               
Cow position:
               
chr25:3663925-3664674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
756
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
643, 633
               

               
Conread position:
               
25-347
               

               
Cow position:
               
chr25:34734013-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 144
               

               
Conread position:
               
26-189
               

               
Cow position:
               
chr25:24398192-24398029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-455
               

               
Cow position:
               
chr25:36844623-36844203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
222, 226
               

               
Conread position:
               
26-588
               

               
Cow position:
               
chr25:33144846-33145405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
380, 193
               

               
Conread position:
               
26-590
               

               
Cow position:
               
chr25:33299148-33299712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-622
               

               
Cow position:
               
chr25:36801372-36801968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
463, 472
               

               
Conread position:
               
29-656
               

               
Cow position:
               
chr25:36801219-36801834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
460, 122
               

               
Conread position:
               
29-668
               

               
Cow position:
               
chr25:33530061-33530699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 223
               

               
Conread position:
               
30-504
               

               
Cow position:
               
chr25:326330-326804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 131
               

               
Conread position:
               
31-598
               

               
Cow position:
               
chr25:34473509-34474073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 207
               

               
Conread position:
               
31-656
               

               
Cow position:
               
chr25:33298565-33299190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 221
               

               
Conread position:
               
32-535
               

               
Cow position:
               
chr25:33127721-33128224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 181
               

               
Conread position:
               
44-610
               

               
Cow position:
               
chr25:3636547-3635981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
546, 551
               

               
Conread position:
               
49-626
               

               
Cow position:
               
chr25:326517-327100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 349
               

               
Conread position:
               
49-681
               

               
Cow position:
               
chr25:24399207-24398590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
419, 161
               

               
Conread position:
               
50-654
               

               
Cow position:
               
chr25:33157452-33156848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 188
               

               
Conread position:
               
52-397
               

               
Cow position:
               
chr25:22941354-22941009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
52-505
               

               
Cow position:
               
chr25:33529037-33529490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 200
               

               
Conread position:
               
57-541
               

               
Cow position:
               
chr25:23266994-23266512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
59-645
               

               
Cow position:
               
chr25:34762859-34763442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 0
               

               
Conread position:
               
62-597
               

               
Cow position:
               
chr25:33127667-33128202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
62-626
               

               
Cow position:
               
chr25:33157524-33156960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
64-656
               

               
Cow position:
               
chr25:36800582-36801174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
196, 190
               

               
Conread position:
               
70-695
               

               
Cow position:
               
chr25:3636605-3635980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
75-655
               

               
Cow position:
               
chr25:24385370-24384790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 246
               

               
Conread position:
               
78-403
               

               
Cow position:
               
chr25:34734041-34733719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 26
               

               
Conread position:
               
78-619
               

               
Cow position:
               
chr25:23267528-23266997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
394, 25
               

               
Conread position:
               
82-685
               

               
Cow position:
               
chr25:33530028-33530633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 169
               

               
Conread position:
               
90-694
               

               
Cow position:
               
chr25:33157580-33156976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
92-516
               

               
Cow position:
               
chr25:22235892-22236316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
324, 338
               

               
Conread position:
               
98-681
               

               
Cow position:
               
chr25:25652173-25652756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 154
               

               
Conread position:
               
110-655
               

               
Cow position:
               
chr25:24398990-24398448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
112-526
               

               
Cow position:
               
chr25:3675991-3676405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 125
               

               
Conread position:
               
113-656
               

               
Cow position:
               
chr25:33298479-33299022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
114-645
               

               
Cow position:
               
chr25:326330-326861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
158, 132
               

               
Conread position:
               
114-706
               

               
Cow position:
               
chr25:22235749-22236338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
470, 47
               

               
Conread position:
               
115-566
               

               
Cow position:
               
chr25:4657463-4657011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 123
               

               
Conread position:
               
115-646
               

               
Cow position:
               
chr25:34473509-34474037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 314
               

               
Conread position:
               
118-481
               

               
Cow position:
               
chr25:22941372-22941009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
123-655
               

               
Cow position:
               
chr25:24385406-24384874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 356
               

               
Conread position:
               
127-575
               

               
Cow position:
               
chr25:33529028-33529476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
134-403
               

               
Cow position:
               
chr25:3637072-3636800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
134-494
               

               
Cow position:
               
chr25:33506769-33507129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
141-610
               

               
Cow position:
               
chr25:23266994-23266526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
228, 206
               

               
Conread position:
               
145-447
               

               
Cow position:
               
chr25:427277-427580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
146-655
               

               
Cow position:
               
chr25:33127667-33128176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
150-654
               

               
Cow position:
               
chr25:34770171-34769667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
196-873
               

               
Cow position:
               
chr25:25652187-25652869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
515, 572
               

               
Conread position:
               
203-404
               

               
Cow position:
               
chr25:5034951-5034750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
203-588
               

               
Cow position:
               
chr25:346454-346839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
203, 212
               

               
Conread position:
               
203-694
               

               
Cow position:
               
chr25:34473513-34474001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 117
               

               
Conread position:
               
206-541
               

               
Cow position:
               
chr25:3637084-3636743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 330
               

               
Conread position:
               
208-609
               

               
Cow position:
               
chr25:4657454-4657053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
211-651
               

               
Cow position:
               
chr25:34446952-34447392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-655
               

               
Cow position:
               
chr25:33529028-33529472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
212-576
               

               
Cow position:
               
chr25:33506763-33507127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 117
               

               
Conread position:
               
212-582
               

               
Cow position:
               
chr25:22941362-22940994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
212-635
               

               
Cow position:
               
chr25:326344-326769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 117
               

               
Conread position:
               
213-649
               

               
Cow position:
               
chr25:33506686-33507116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
220-598
               

               
Cow position:
               
chr25:3676015-3676393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
221-515
               

               
Cow position:
               
chr25:34733985-34733691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
225-715
               

               
Cow position:
               
chr25:23266994-23266507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
246-665
               

               
Cow position:
               
chr25:3675957-3676377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
417, 0
               

               
Conread position:
               
260-531
               

               
Cow position:
               
chr25:427308-427580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
74, 62
               

               
Conread position:
               
268-598
               

               
Cow position:
               
chr25:34734023-34733692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 154
               

               
Conread position:
               
272-655
               

               
Cow position:
               
chr25:22940525-22940142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
95, 88
               

               
Conread position:
               
274-570
               

               
Cow position:
               
chr25:34732615-34732319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 156
               

               
Conread position:
               
275-655
               

               
Cow position:
               
chr25:36844626-36844255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
271, 0
               

               
Conread position:
               
276-654
               

               
Cow position:
               
chr25:33144844-33145219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
283-655
               

               
Cow position:
               
chr25:24385414-24385042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
284-653
               

               
Cow position:
               
chr25:22941374-22941005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
285-488
               

               
Cow position:
               
chr25:5034953-5034750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
286-655
               

               
Cow position:
               
chr25:4657460-4657091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
290-655
               

               
Cow position:
               
chr25:34762840-34763200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
292-649
               

               
Cow position:
               
chr25:414685-414329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
331, 217
               

               
Conread position:
               
296-655
               

               
Cow position:
               
chr25:326344-326703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 64
               

               
Conread position:
               
313-588
               

               
Cow position:
               
chr25:427277-427552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
326-655
               

               
Cow position:
               
chr25:34770163-34769834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
246, 240
               

               
Conread position:
               
333-655
               

               
Cow position:
               
chr25:34446990-34447312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 33
               

               
Conread position:
               
352-655
               

               
Cow position:
               
chr25:34734023-34733719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
355-694
               

               
Cow position:
               
chr25:22940526-22940187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
361-710
               

               
Cow position:
               
chr25:34732612-34732263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
308, 295
               

               
Conread position:
               
365-655
               

               
Cow position:
               
chr25:33506748-33507038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
368-655
               

               
Cow position:
               
chr25:22941374-22941087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
368-709
               

               
Cow position:
               
chr25:3636559-3636218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
371-626
               

               
Cow position:
               
chr25:34762835-34763090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
376-655
               

               
Cow position:
               
chr25:3637082-3636800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
427-657
               

               
Cow position:
               
chr25:36844642-36844412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
451-655
               

               
Cow position:
               
chr25:4657463-4657259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
451-655
               

               
Cow position:
               
chr25:34473509-34473713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
463-694
               

               
Cow position:
               
chr25:24385402-24385171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
207, 202
               

               
Conread position:
               
511-681
               

               
Cow position:
               
chr25:25652166-25652336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
152, 159
               

               
Conread position:
               
1-618
               

               
Cow position:
               
chr28:34695968-34696585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr28:33210286-33210622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
275, 0
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr28:34695891-34696538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 89
               

               
Conread position:
               
11-611
               

               
Cow position:
               
chr28:11334071-11333471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
310, 303
               

               
Conread position:
               
12-621
               

               
Cow position:
               
chr28:11334154-11333545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
165, 159
               

               
Conread position:
               
50-457
               

               
Cow position:
               
chr28:33210249-33210657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
310, 0
               

               
Conread position:
               
51-655
               

               
Cow position:
               
chr28:34695850-34696454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 130
               

               
Conread position:
               
53-655
               

               
Cow position:
               
chr28:11333945-11333349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
568, 477
               

               
Conread position:
               
92-612
               

               
Cow position:
               
chr28:7757815-7758335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
113-541
               

               
Cow position:
               
chr28:33210228-33210657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 410
               

               
Conread position:
               
227-590
               

               
Cow position:
               
chr28:33210258-33210622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 0
               

               
Conread position:
               
287-713
               

               
Cow position:
               
chr28:33210234-33210660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 384
               

               
Conread position:
               
13-582
               

               
Cow position:
               
chr29:39627524-39626958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
159, 164
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr3:20194948-20195267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 249
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr3:20194505-20194691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-513
               

               
Cow position:
               
chr3:20194781-20195290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 248
               

               
Conread position:
               
22-574
               

               
Cow position:
               
chr3:20194714-20195267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 231
               

               
Conread position:
               
27-287
               

               
Cow position:
               
chr3:20194444-20194706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
221, 225
               

               
Conread position:
               
97-694
               

               
Cow position:
               
chr3:20194705-20195303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
99-394
               

               
Cow position:
               
chr3:20194431-20194728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 140
               

               
Conread position:
               
194-436
               

               
Cow position:
               
chr3:20194443-20194685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
195-451
               

               
Cow position:
               
chr3:63430873-63431129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
111, 104
               

               
Conread position:
               
271-539
               

               
Cow position:
               
chr3:20194436-20194703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 0
               

               
Conread position:
               
355-610
               

               
Cow position:
               
chr3:20194437-20194691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
362-614
               

               
Cow position:
               
chr3:63430872-63431124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
132, 120
               

               
Conread position:
               
444-655
               

               
Cow position:
               
chr3:20194441-20194652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-183
               

               
Cow position:
               
chr4:65261327-65261146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
2-787
               

               
Cow position:
               
chr4:65146645-65147433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
801
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
5-535
               

               
Cow position:
               
chr4:65494965-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 335
               

               
Conread position:
               
6-655
               

               
Cow position:
               
chr4:65350106-65350752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 156
               

               
Conread position:
               
7-190
               

               
Cow position:
               
chr4:65546374-65546191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
153, 162
               

               
Conread position:
               
7-371
               

               
Cow position:
               
chr4:65261490-65261127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
153, 165
               

               
Conread position:
               
7-486
               

               
Cow position:
               
chr4:65121595-65122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 182
               

               
Conread position:
               
7-560
               

               
Cow position:
               
chr4:65703521-65702968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 162
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr4:65146483-65146760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
91, 97
               

               
Conread position:
               
8-373
               

               
Cow position:
               
chr4:65702815-65702452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 96
               

               
Conread position:
               
8-644
               

               
Cow position:
               
chr4:65703604-65702968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 244
               

               
Conread position:
               
8-646
               

               
Cow position:
               
chr4:65261822-65261187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
19-373
               

               
Cow position:
               
chr4:65121775-65122130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
270, 265
               

               
Conread position:
               
19-574
               

               
Cow position:
               
chr4:65261733-65261175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
19-695
               

               
Cow position:
               
chr4:65349783-65350459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 221
               

               
Conread position:
               
20-168
               

               
Cow position:
               
chr4:65121215-65121363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-405
               

               
Cow position:
               
chr4:65350372-65350754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 111
               

               
Conread position:
               
20-436
               

               
Cow position:
               
chr4:65261561-65261145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 64
               

               
Conread position:
               
20-529
               

               
Cow position:
               
chr4:65350288-65350794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
20-603
               

               
Cow position:
               
chr4:65350204-65350784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 154
               

               
Conread position:
               
20-660
               

               
Cow position:
               
chr4:65350036-65350673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
21-262
               

               
Cow position:
               
chr4:65121132-65121373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
22-619
               

               
Cow position:
               
chr4:65495032-65494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 222
               

               
Conread position:
               
22-655
               

               
Cow position:
               
chr4:65703674-65703044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 62
               

               
Conread position:
               
23-646
               

               
Cow position:
               
chr4:65146414-65147040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
220, 229
               

               
Conread position:
               
23-694
               

               
Cow position:
               
chr4:65261888-65261223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
25-441
               

               
Cow position:
               
chr4:65702882-65702466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
29-386
               

               
Cow position:
               
chr4:65157838-65158205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 55
               

               
Conread position:
               
43-570
               

               
Cow position:
               
chr4:65121547-65122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr4:65546416-65546181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
88-672
               

               
Cow position:
               
chr4:65495323-65494712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 81
               

               
Conread position:
               
91-521
               

               
Cow position:
               
chr4:65702900-65702470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
70, 86
               

               
Conread position:
               
95-369
               

               
Cow position:
               
chr4:65546449-65546181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
105-336
               

               
Cow position:
               
chr4:65121132-65121363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
133, 147
               

               
Conread position:
               
109-717
               

               
Cow position:
               
chr4:65495029-65494416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 483
               

               
Conread position:
               
113-445
               

               
Cow position:
               
chr4:65157838-65158179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
113-572
               

               
Cow position:
               
chr4:65703667-65703208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
128-654
               

               
Cow position:
               
chr4:65121548-65122074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
169-404
               

               
Cow position:
               
chr4:65495326-65495091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
159, 168
               

               
Conread position:
               
195-524
               

               
Cow position:
               
chr4:65146418-65146751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
195-619
               

               
Cow position:
               
chr4:65702880-65702458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
202-403
               

               
Cow position:
               
chr4:65121145-65121346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
122, 129
               

               
Conread position:
               
212-532
               

               
Cow position:
               
chr4:65157853-65158182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 35
               

               
Conread position:
               
220-446
               

               
Cow position:
               
chr4:65546413-65546187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
221-370
               

               
Cow position:
               
chr4:65402065-65402214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
228-715
               

               
Cow position:
               
chr4:65702934-65702444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
248-695
               

               
Cow position:
               
chr4:65703616-65703169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 80
               

               
Conread position:
               
263-530
               

               
Cow position:
               
chr4:65546449-65546187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
273-532
               

               
Cow position:
               
chr4:65121132-65121391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
135, 142
               

               
Conread position:
               
276-610
               

               
Cow position:
               
chr4:65157833-65158176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 55
               

               
Conread position:
               
291-694
               

               
Cow position:
               
chr4:65121543-65121946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
337-575
               

               
Cow position:
               
chr4:65495326-65495088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
190, 204
               

               
Conread position:
               
346-610
               

               
Cow position:
               
chr4:65146402-65146665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
361-598
               

               
Cow position:
               
chr4:65121136-65121373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
361-610
               

               
Cow position:
               
chr4:65546437-65546191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
129, 5
               

               
Conread position:
               
365-665
               

               
Cow position:
               
chr4:65157838-65158147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 50
               

               
Conread position:
               
371-515
               

               
Cow position:
               
chr4:65402048-65402191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
120, 7
               

               
Conread position:
               
430-694
               

               
Cow position:
               
chr4:65146402-65146665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
455-646
               

               
Cow position:
               
chr4:65121146-65121337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
469-717
               

               
Cow position:
               
chr4:65546416-65546168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
291-568
               

               
Cow position:
               
chr5:25884700-25884423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
1-594
               

               
Cow position:
               
chr6:49428956-49429545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 176
               

               
Conread position:
               
4-655
               

               
Cow position:
               
chr6:49428623-49429274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 83
               

               
Conread position:
               
7-626
               

               
Cow position:
               
chr6:49340634-49341253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
246, 253
               

               
Conread position:
               
7-874
               

               
Cow position:
               
chr6:49428542-49429414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
875
               

               
Alignm identity:
               
583
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 231
               

               
Conread position:
               
8-465
               

               
Cow position:
               
chr6:49396524-49396983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
8-573
               

               
Cow position:
               
chr6:49396194-49396753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
336, 34
               

               
Conread position:
               
8-582
               

               
Cow position:
               
chr6:49396356-49396930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 78
               

               
Conread position:
               
8-661
               

               
Cow position:
               
chr6:49396272-49396927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 165
               

               
Conread position:
               
8-705
               

               
Cow position:
               
chr6:49428795-49429492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 337
               

               
Conread position:
               
8-873
               

               
Cow position:
               
chr6:49428291-49429161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
876
               

               
Alignm identity:
               
596
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 123
               

               
Conread position:
               
14-655
               

               
Cow position:
               
chr6:49340556-49341198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 415
               

               
Conread position:
               
14-655
               

               
Cow position:
               
chr6:49340724-49341366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
7, 225
               

               
Conread position:
               
18-319
               

               
Cow position:
               
chr6:49362328-49362629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
146, 155
               

               
Conread position:
               
18-709
               

               
Cow position:
               
chr6:49428469-49429160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
652, 647
               

               
Conread position:
               
24-655
               

               
Cow position:
               
chr6:49428222-49428854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 231
               

               
Conread position:
               
53-655
               

               
Cow position:
               
chr6:49396155-49396751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
353, 76
               

               
Conread position:
               
70-655
               

               
Cow position:
               
chr6:49340361-49340946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
94, 107
               

               
Conread position:
               
110-656
               

               
Cow position:
               
chr6:49362096-49362630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 64
               

               
Conread position:
               
267-655
               

               
Cow position:
               
chr6:49428214-49428602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-694
               

               
Cow position:
               
chr6:49428233-49428557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
2-531
               

               
Cow position:
               
chr7:12293489-12294018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 341
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr7:28846819-28847123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 65
               

               
Conread position:
               
6-449
               

               
Cow position:
               
chr7:12293577-12294020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-598
               

               
Cow position:
               
chr7:12293409-12294001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-394
               

               
Cow position:
               
chr7:28846737-28847123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 331
               

               
Conread position:
               
8-349
               

               
Cow position:
               
chr7:18390393-18390734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-646
               

               
Cow position:
               
chr7:28846486-28847123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 218
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chr7:42878961-42878314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
204, 221
               

               
Conread position:
               
20-655
               

               
Cow position:
               
chr7:12293339-12293974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-624
               

               
Cow position:
               
chr7:18390162-18390759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
34-681
               

               
Cow position:
               
chr7:12293269-12293916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 27
               

               
Conread position:
               
52-619
               

               
Cow position:
               
chr7:28846446-28847013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 175
               

               
Conread position:
               
113-655
               

               
Cow position:
               
chr7:18390162-18390704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
500, 505
               

               
Conread position:
               
123-684
               

               
Cow position:
               
chr7:28846433-28846994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
458, 451
               

               
Conread position:
               
199-655
               

               
Cow position:
               
chr7:28846425-28846881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-609
               

               
Cow position:
               
chr7:28845867-28846275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
284-681
               

               
Cow position:
               
chr7:12293267-12293664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
389-710
               

               
Cow position:
               
chr7:28846447-28846767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
115, 108
               

               
Conread position:
               
4-571
               

               
Cow position:
               
chr8:55580881-55581448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-597
               

               
Cow position:
               
chr8:55581135-55581726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
400, 404
               

               
Conread position:
               
7-656
               

               
Cow position:
               
chr8:46816611-46817260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
157, 170
               

               
Conread position:
               
26-645
               

               
Cow position:
               
chr8:55580987-55581606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
452, 471
               

               
Conread position:
               
44-576
               

               
Cow position:
               
chr8:55580837-55581369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
362, 366
               

               
Conread position:
               
91-657
               

               
Cow position:
               
chr8:46816107-46816673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
161, 154
               

               
Conread position:
               
104-709
               

               
Cow position:
               
chr8:48407555-48406951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
298, 294
               

               
Conread position:
               
293-655
               

               
Cow position:
               
chr8:55580834-55581196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
320, 325
               

               
Conread position:
               
2-478
               

               
Cow position:
               
chrX:14181417-14180941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 71
               

               
Conread position:
               
3-655
               

               
Cow position:
               
chrX:13826890-13826238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
5-585
               

               
Cow position:
               
chrX:13826720-13826143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 0
               

               
Conread position:
               
6-611
               

               
Cow position:
               
chrX:13826803-13826198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 304
               

               
Conread position:
               
7-655
               

               
Cow position:
               
chrX:25325273-25324625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
157, 167
               

               
Conread position:
               
8-562
               

               
Cow position:
               
chrX:14181495-14180941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
532, 521
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chrX:25325356-25324709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
8-655
               

               
Cow position:
               
chrX:25325524-25324877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
148, 135
               

               
Conread position:
               
8-656
               

               
Cow position:
               
chrX:25309785-25310433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 67
               

               
Conread position:
               
18-694
               

               
Cow position:
               
chrX:14181569-14180893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 219
               

               
Conread position:
               
29-655
               

               
Cow position:
               
chrX:13826948-13826322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
50-708
               

               
Cow position:
               
chrX:14181621-14180964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 119
               

               
Conread position:
               
116-693
               

               
Cow position:
               
chrX:14181639-14181062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 224
               

               
Conread position:
               
287-694
               

               
Cow position:
               
chrX:14181636-14181229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
187, 180