Cow genome map
| Conread name: | Ss1.1-reep35c_j3.5 |
| Conread position: | 1-173 |
| Cow position: | chr1:53889864-53889692 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-173 |
| Cow position: | chr1:86867877-86867705 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-390 |
| Cow position: | chr1:53889232-53889010 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-541 |
| Cow position: | chr1:86815621-86815465 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-541 |
| Cow position: | chr1:21862119-21862274 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-541 |
| Cow position: | chr1:53888903-53888748 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-733 |
| Cow position: | chr1:53888658-53888465 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 733-889 |
| Cow position: | chr1:53888375-53888219 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 885-1536 |
| Cow position: | chr1:53888118-53887466 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 6 |
| Conread position: | 1-109 |
| Cow position: | chr2:83718217-83718325 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-173 |
| Cow position: | chr2:83274848-83274678 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-107 |
| Cow position: | chr2:84308102-84308004 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-381 |
| Cow position: | chr2:84307116-84306856 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 177-361 |
| Cow position: | chr2:66550113-66550297 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 177-363 |
| Cow position: | chr2:83718724-83718910 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-390 |
| Cow position: | chr2:83272754-83272541 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-541 |
| Cow position: | chr2:84305887-84305730 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-541 |
| Cow position: | chr2:83271187-83271031 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 133 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-541 |
| Cow position: | chr2:83719067-83719219 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 533-728 |
| Cow position: | chr2:84305651-84305454 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 540-709 |
| Cow position: | chr2:66556692-66556861 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-709 |
| Cow position: | chr2:83719838-83720007 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-718 |
| Cow position: | chr2:83269759-83269581 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 145 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 750-882 |
| Cow position: | chr2:83267745-83267613 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 891-999 |
| Cow position: | chr2:83264845-83264737 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-173 |
| Cow position: | chr25:32230253-32230425 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-390 |
| Cow position: | chr25:32233423-32233645 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-555 |
| Cow position: | chr25:32233940-32234105 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 139 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 540-719 |
| Cow position: | chr25:32234517-32234696 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-981 |
| Cow position: | chr3:11323550-11322581 (view UCSC Genome Browser custom track) |
| Alignm length: | 982 |
| Alignm identity: | 713 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 733, 176 |
| Conread position: | 161-336 |
| Cow position: | chr3:75463623-75463799 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 18-177 |
| Cow position: | chr4:60468539-60468380 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 201-352 |
| Cow position: | chr4:57689054-57689205 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 101, 106 |
| Conread position: | 389-541 |
| Cow position: | chr4:57689403-57689555 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-556 |
| Cow position: | chr4:60467430-60467281 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 177-374 |
| Cow position: | chr6:45389648-45389846 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 389-541 |
| Cow position: | chr6:45393356-45393508 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 540-714 |
| Cow position: | chr6:45406805-45406978 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 211-626 |
| Cow position: | chr8:45957020-45957428 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 105 |