Cow genome map
| Conread name: | Ss1.1-relu1330c_k24.5 |
| Conread position: | 183-664 |
| Cow position: | chr1:34693127-34693604 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 192-656 |
| Cow position: | chr1:51598505-51598054 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 149 |
| Conread position: | 202-664 |
| Cow position: | chr1:32029721-32030169 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 205-427 |
| Cow position: | chr1:29922667-29922886 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 558-664 |
| Cow position: | chr1:29922885-29922991 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-664 |
| Cow position: | chr10:59315099-59314628 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 367-673 |
| Cow position: | chr10:27414976-27414679 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 908-1141 |
| Cow position: | chr10:49444733-49444963 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 180-664 |
| Cow position: | chr11:54483086-54483567 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 47 |
| Conread position: | 192-664 |
| Cow position: | chr11:19055-18590 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 193-664 |
| Cow position: | chr11:20797499-20797958 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 34 |
| Conread position: | 941-1086 |
| Cow position: | chr11:9281177-9281037 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 24 |
| Conread position: | 191-664 |
| Cow position: | chr13:19466695-19467180 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 369 |
| Conread position: | 223-664 |
| Cow position: | chr13:51215928-51215501 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 985-1090 |
| Cow position: | chr13:56327597-56327702 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 206-654 |
| Cow position: | chr15:15058773-15059222 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 292 |
| Conread position: | 153-664 |
| Cow position: | chr16:42512702-42513221 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 218-319 |
| Cow position: | chr16:52772246-52772347 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-668 |
| Cow position: | chr16:52772797-52773129 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 197-511 |
| Cow position: | chr17:3452930-3452621 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 230-528 |
| Cow position: | chr17:37947561-37947836 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 501-664 |
| Cow position: | chr17:3449267-3449104 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 135 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 833-1090 |
| Cow position: | chr17:22514722-22514981 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 997-1079 |
| Cow position: | chr17:25553031-25553113 (view UCSC Genome Browser custom track) |
| Alignm length: | 83 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 188-385 |
| Cow position: | chr18:36348731-36348923 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 188-664 |
| Cow position: | chr18:32368599-32369071 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 198-351 |
| Cow position: | chr18:49656806-49656959 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 436-658 |
| Cow position: | chr18:49656963-49657180 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 175-612 |
| Cow position: | chr19:9092589-9092159 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 210 |
| Conread position: | 196-637 |
| Cow position: | chr19:17309617-17310052 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 198-664 |
| Cow position: | chr19:28807402-28807849 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 236-663 |
| Cow position: | chr19:2593858-2593434 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 324 |
| Conread position: | 121-224 |
| Cow position: | chr20:30039737-30039632 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 196-664 |
| Cow position: | chr20:12720888-12721357 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 31 |
| Conread position: | 201-611 |
| Cow position: | chr20:37983944-37983539 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 33 |
| Conread position: | 217-653 |
| Cow position: | chr21:8064535-8064967 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 941-1065 |
| Cow position: | chr21:40856888-40856765 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 188-644 |
| Cow position: | chr23:17122324-17122781 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 186-664 |
| Cow position: | chr24:36907307-36906837 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 469, 174 |
| Conread position: | 205-336 |
| Cow position: | chr25:11809158-11809031 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 124 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 336-425 |
| Cow position: | chr25:11807918-11807829 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-504 |
| Cow position: | chr25:11805134-11805054 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 77 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 502-654 |
| Cow position: | chr25:11804541-11804388 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 144 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 192-444 |
| Cow position: | chr26:11960594-11960350 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 909-1141 |
| Cow position: | chr29:5118583-5118816 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 7 |
| Conread position: | 178-605 |
| Cow position: | chr3:58898412-58897986 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 86 |
| Conread position: | 195-664 |
| Cow position: | chr3:5422166-5421699 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 34 |
| Conread position: | 235-667 |
| Cow position: | chr3:68595398-68594980 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 174-671 |
| Cow position: | chr4:1275979-1276472 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 291-664 |
| Cow position: | chr4:38156516-38156146 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 455-667 |
| Cow position: | chr5:46150269-46150480 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 180-672 |
| Cow position: | chr7:32233660-32233194 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 36 |
| Conread position: | 182-664 |
| Cow position: | chr8:45209221-45208743 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 206-597 |
| Cow position: | chr8:44868191-44867815 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 988-1141 |
| Cow position: | chr8:15407964-15408117 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-664 |
| Cow position: | chr9:56078182-56077707 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 41 |