Cow genome map
| Conread name: | Ss1.1-reye1632b_l3.5 |
| Conread position: | 18-407 |
| Cow position: | chr1:59561796-59562163 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 28-406 |
| Cow position: | chr1:51761234-51761605 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 49 |
| Conread position: | 39-564 |
| Cow position: | chr1:92087194-92086673 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 83 |
| Conread position: | 5-411 |
| Cow position: | chr10:53702198-53702605 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 56 |
| Conread position: | 28-188 |
| Cow position: | chr10:17597312-17597156 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 145-277 |
| Cow position: | chr10:17597060-17596926 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 220-558 |
| Cow position: | chr10:28717143-28717475 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 33 |
| Conread position: | 273-397 |
| Cow position: | chr10:17596906-17596783 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 17-380 |
| Cow position: | chr17:24555563-24555931 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 91 |
| Conread position: | 9-156 |
| Cow position: | chr19:49889321-49889468 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-383 |
| Cow position: | chr19:47347723-47347368 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 134 |
| Conread position: | 178-409 |
| Cow position: | chr19:49889460-49889698 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 9-399 |
| Cow position: | chr2:37980390-37980783 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 68 |
| Conread position: | 273-389 |
| Cow position: | chr2:78381969-78381855 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 29-350 |
| Cow position: | chr21:8058075-8057759 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 48 |
| Conread position: | 28-411 |
| Cow position: | chr22:36999645-36999279 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 29 |
| Conread position: | 119-208 |
| Cow position: | chr22:39022239-39022328 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 208-538 |
| Cow position: | chr22:39023749-39024079 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 12-410 |
| Cow position: | chr23:22292589-22292993 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 241 |
| Conread position: | 322-564 |
| Cow position: | chr25:3648382-3648148 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 146, 64 |
| Conread position: | 39-157 |
| Cow position: | chr28:24292518-24292630 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 163-405 |
| Cow position: | chr28:24292907-24293155 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 90 |
| Conread position: | 1-411 |
| Cow position: | chr29:29388507-29388099 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 74 |
| Conread position: | 50-564 |
| Cow position: | chr29:27096213-27096730 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 141 |
| Conread position: | 7-397 |
| Cow position: | chr5:8561827-8562223 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 246 |
| Conread position: | 9-396 |
| Cow position: | chr5:8566744-8567137 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 244 |
| Conread position: | 18-374 |
| Cow position: | chr6:64793433-64793774 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 84-393 |
| Cow position: | chr6:25005600-25005291 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 22 |
| Conread position: | 12-251 |
| Cow position: | chr7:10887489-10887252 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 15-399 |
| Cow position: | chr7:8528043-8527662 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 61 |
| Conread position: | 20-405 |
| Cow position: | chr7:1276897-1276506 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 233 |
| Conread position: | 239-446 |
| Cow position: | chr7:10886973-10886764 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 43-564 |
| Cow position: | chr8:40992641-40993142 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 29 |
| Conread position: | 22-401 |
| Cow position: | chr9:55434480-55434097 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 12 |
| Conread position: | 107-397 |
| Cow position: | chr9:36049644-36049922 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 69 |
| Conread position: | 7-408 |
| Cow position: | chrX:40302996-40303400 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 273-389 |
| Cow position: | chrX:25319470-25319354 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |