• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-rfbs3927b_n2.5
        

               
Conread position:
               
1-171
               

               
Cow position:
               
chr1:55866691-55866865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
210-388
               

               
Cow position:
               
chr1:55866837-55867012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
632-966
               

               
Cow position:
               
chr1:43976583-43976254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
20, 262
               

               
Conread position:
               
642-804
               

               
Cow position:
               
chr1:68790067-68789901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
645-952
               

               
Cow position:
               
chr1:54987522-54987832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
647-963
               

               
Cow position:
               
chr1:79915811-79915489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
651-855
               

               
Cow position:
               
chr1:53020215-53020434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
654-972
               

               
Cow position:
               
chr1:63123167-63122860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
655-965
               

               
Cow position:
               
chr1:56440071-56439751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
656-968
               

               
Cow position:
               
chr1:17478584-17478279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
657-943
               

               
Cow position:
               
chr1:68593594-68593312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
153, 55
               

               
Conread position:
               
657-947
               

               
Cow position:
               
chr1:33538583-33538281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
658-838
               

               
Cow position:
               
chr1:55867151-55867332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
658-896
               

               
Cow position:
               
chr1:40967625-40967390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
199, 17
               

               
Conread position:
               
658-919
               

               
Cow position:
               
chr1:80620412-80620669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
658-947
               

               
Cow position:
               
chr1:57742739-57743022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
658-949
               

               
Cow position:
               
chr1:88482901-88482603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
658-967
               

               
Cow position:
               
chr1:50922744-50923076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
658-968
               

               
Cow position:
               
chr1:29791388-29791694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 99
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr1:5265807-5266123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
659-900
               

               
Cow position:
               
chr1:15786083-15786320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
659-942
               

               
Cow position:
               
chr1:70035471-70035190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
659-942
               

               
Cow position:
               
chr1:74545191-74545477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
659-942
               

               
Cow position:
               
chr1:91059747-91059462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
659-953
               

               
Cow position:
               
chr1:3667238-3667530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 22
               

               
Conread position:
               
659-963
               

               
Cow position:
               
chr1:29605486-29605796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
660-933
               

               
Cow position:
               
chr1:71453532-71453810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
660-952
               

               
Cow position:
               
chr1:11408932-11408624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
660-967
               

               
Cow position:
               
chr1:26624270-26624576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
661-945
               

               
Cow position:
               
chr1:40647065-40646777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr1:9462978-9463284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 84
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr1:53648534-53648222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
662-785
               

               
Cow position:
               
chr1:50961847-50961725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
663-970
               

               
Cow position:
               
chr1:40479102-40479408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
664-952
               

               
Cow position:
               
chr1:22774071-22774361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
667-899
               

               
Cow position:
               
chr1:74754314-74754541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
667-957
               

               
Cow position:
               
chr1:5215214-5215504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
667-966
               

               
Cow position:
               
chr1:53781864-53781581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
669-889
               

               
Cow position:
               
chr1:31121618-31121839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
26, 138
               

               
Conread position:
               
669-925
               

               
Cow position:
               
chr1:1940934-1941181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
182, 85
               

               
Conread position:
               
673-953
               

               
Cow position:
               
chr1:55153950-55154212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
674-952
               

               
Cow position:
               
chr1:71121765-71121481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
688-970
               

               
Cow position:
               
chr1:11210712-11210446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
169, 11
               

               
Conread position:
               
702-972
               

               
Cow position:
               
chr1:82569857-82569579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 145
               

               
Conread position:
               
705-869
               

               
Cow position:
               
chr1:34945207-34945038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
709-967
               

               
Cow position:
               
chr1:29431091-29430829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
153, 51
               

               
Conread position:
               
715-942
               

               
Cow position:
               
chr1:84778379-84778149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
724-917
               

               
Cow position:
               
chr1:52162965-52163150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
739-921
               

               
Cow position:
               
chr1:62424481-62424668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
52, 121
               

               
Conread position:
               
739-972
               

               
Cow position:
               
chr1:60086786-60086546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
778-972
               

               
Cow position:
               
chr1:76223555-76223752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 184
               

               
Conread position:
               
797-972
               

               
Cow position:
               
chr1:7631640-7631469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
798-951
               

               
Cow position:
               
chr1:79133074-79132920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
62, 129
               

               
Conread position:
               
815-964
               

               
Cow position:
               
chr1:7376299-7376150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
821-956
               

               
Cow position:
               
chr1:6798768-6798903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
823-970
               

               
Cow position:
               
chr1:55867450-55867595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
833-971
               

               
Cow position:
               
chr1:37306169-37306307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
833-972
               

               
Cow position:
               
chr1:90298247-90298107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
616-968
               

               
Cow position:
               
chr10:8107326-8107702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 136
               

               
Conread position:
               
646-812
               

               
Cow position:
               
chr10:50163848-50163675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
654-957
               

               
Cow position:
               
chr10:26930633-26930945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
654-971
               

               
Cow position:
               
chr10:29798568-29798253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
655-972
               

               
Cow position:
               
chr10:29773536-29773207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 55
               

               
Conread position:
               
656-967
               

               
Cow position:
               
chr10:10202998-10203311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
657-956
               

               
Cow position:
               
chr10:53443291-53442986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
657-958
               

               
Cow position:
               
chr10:44863881-44864186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 259
               

               
Conread position:
               
658-839
               

               
Cow position:
               
chr10:14649428-14649610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
658-964
               

               
Cow position:
               
chr10:58809466-58809774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 95
               

               
Conread position:
               
658-965
               

               
Cow position:
               
chr10:52084228-52084524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 119
               

               
Conread position:
               
658-970
               

               
Cow position:
               
chr10:48479166-48479478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
658-971
               

               
Cow position:
               
chr10:9343863-9343546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
659-936
               

               
Cow position:
               
chr10:58230503-58230223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 181
               

               
Conread position:
               
659-957
               

               
Cow position:
               
chr10:69941584-69941868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 38
               

               
Conread position:
               
659-961
               

               
Cow position:
               
chr10:16522374-16522072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
659-967
               

               
Cow position:
               
chr10:32897204-32896892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
660-874
               

               
Cow position:
               
chr10:17841798-17841577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 152
               

               
Conread position:
               
660-878
               

               
Cow position:
               
chr10:5031870-5032095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
660-914
               

               
Cow position:
               
chr10:28076133-28076385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
660-916
               

               
Cow position:
               
chr10:1610734-1610483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 139
               

               
Conread position:
               
660-922
               

               
Cow position:
               
chr10:10957197-10957472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
660-922
               

               
Cow position:
               
chr10:57957507-57957774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
10, 104
               

               
Conread position:
               
660-934
               

               
Cow position:
               
chr10:5505592-5505870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
660-938
               

               
Cow position:
               
chr10:57993651-57993939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
660-944
               

               
Cow position:
               
chr10:36954146-36954433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
660-968
               

               
Cow position:
               
chr10:46561068-46561374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr10:66172912-66173227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
663-839
               

               
Cow position:
               
chr10:13590471-13590296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
663-896
               

               
Cow position:
               
chr10:64163311-64163068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
666-948
               

               
Cow position:
               
chr10:65263230-65262943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
666-972
               

               
Cow position:
               
chr10:39052944-39052643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
667-895
               

               
Cow position:
               
chr10:40420174-40419946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
667-966
               

               
Cow position:
               
chr10:48223568-48223868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
667-968
               

               
Cow position:
               
chr10:882047-881748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
668-968
               

               
Cow position:
               
chr10:28006869-28007173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 140
               

               
Conread position:
               
673-935
               

               
Cow position:
               
chr10:29291450-29291183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 83
               

               
Conread position:
               
673-968
               

               
Cow position:
               
chr10:4880050-4879750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
673-968
               

               
Cow position:
               
chr10:4885823-4885523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 105
               

               
Conread position:
               
676-942
               

               
Cow position:
               
chr10:57773935-57773662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
680-949
               

               
Cow position:
               
chr10:55065666-55065940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
691-955
               

               
Cow position:
               
chr10:32783653-32783925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
691-972
               

               
Cow position:
               
chr10:11635713-11635416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
692-954
               

               
Cow position:
               
chr10:66081583-66081834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
167, 28
               

               
Conread position:
               
692-970
               

               
Cow position:
               
chr10:28449237-28448966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
716-971
               

               
Cow position:
               
chr10:33219248-33219504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
729-949
               

               
Cow position:
               
chr10:16554622-16554407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
738-942
               

               
Cow position:
               
chr10:24631702-24631499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
753-972
               

               
Cow position:
               
chr10:17806465-17806238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 211
               

               
Conread position:
               
763-971
               

               
Cow position:
               
chr10:14019496-14019710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
767-964
               

               
Cow position:
               
chr10:46241838-46242034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
815-966
               

               
Cow position:
               
chr10:23872405-23872553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 56
               

               
Conread position:
               
828-971
               

               
Cow position:
               
chr10:17165493-17165637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
651-972
               

               
Cow position:
               
chr11:23419252-23418944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
209, 29
               

               
Conread position:
               
654-965
               

               
Cow position:
               
chr11:61754436-61754136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
206, 41
               

               
Conread position:
               
657-970
               

               
Cow position:
               
chr11:25379288-25379604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
657-972
               

               
Cow position:
               
chr11:35507097-35506785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
658-925
               

               
Cow position:
               
chr11:17060372-17060111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
658-962
               

               
Cow position:
               
chr11:35502318-35502634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
658-971
               

               
Cow position:
               
chr11:47137485-47137801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 21
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr11:21544619-21544299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr11:53306722-53307037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
659-972
               

               
Cow position:
               
chr11:46035577-46035895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
660-944
               

               
Cow position:
               
chr11:55464832-55465123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
660-964
               

               
Cow position:
               
chr11:10887216-10886913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
141, 23
               

               
Conread position:
               
660-964
               

               
Cow position:
               
chr11:29532261-29531958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
660-972
               

               
Cow position:
               
chr11:64315785-64316100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 283
               

               
Conread position:
               
661-937
               

               
Cow position:
               
chr11:28747967-28748249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
661-966
               

               
Cow position:
               
chr11:57864462-57864768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
664-972
               

               
Cow position:
               
chr11:62040079-62040388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
667-953
               

               
Cow position:
               
chr11:13954052-13954347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
667-957
               

               
Cow position:
               
chr11:61205431-61205141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
667-966
               

               
Cow position:
               
chr11:78705920-78705628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 86
               

               
Conread position:
               
667-971
               

               
Cow position:
               
chr11:80809404-80809716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr11:74215974-74216283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
668-922
               

               
Cow position:
               
chr11:2813413-2813160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
673-964
               

               
Cow position:
               
chr11:47104040-47104336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
674-966
               

               
Cow position:
               
chr11:54094457-54094166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
691-947
               

               
Cow position:
               
chr11:370459-370196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
691-970
               

               
Cow position:
               
chr11:39192647-39192919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 101
               

               
Conread position:
               
694-954
               

               
Cow position:
               
chr11:18489436-18489702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
710-971
               

               
Cow position:
               
chr11:32269447-32269707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
735-935
               

               
Cow position:
               
chr11:25531453-25531645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
741-972
               

               
Cow position:
               
chr11:65022767-65022541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
779-972
               

               
Cow position:
               
chr11:55354246-55354439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
780-962
               

               
Cow position:
               
chr11:18293775-18293591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 174
               

               
Conread position:
               
798-972
               

               
Cow position:
               
chr11:59003573-59003747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
805-967
               

               
Cow position:
               
chr11:68476432-68476597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 139
               

               
Conread position:
               
817-953
               

               
Cow position:
               
chr11:57815619-57815756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
820-966
               

               
Cow position:
               
chr11:68750573-68750716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
642-971
               

               
Cow position:
               
chr12:6644022-6643689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
645-938
               

               
Cow position:
               
chr12:25357015-25357309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
651-873
               

               
Cow position:
               
chr12:21052052-21052281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 173
               

               
Conread position:
               
652-954
               

               
Cow position:
               
chr12:21081189-21081505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
655-912
               

               
Cow position:
               
chr12:22448516-22448780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
658-899
               

               
Cow position:
               
chr12:26554214-26553969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
132, 77
               

               
Conread position:
               
658-925
               

               
Cow position:
               
chr12:29630418-29630147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
658-971
               

               
Cow position:
               
chr12:37359098-37358789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
660-810
               

               
Cow position:
               
chr12:28580641-28580490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
662-968
               

               
Cow position:
               
chr12:35305361-35305058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
667-885
               

               
Cow position:
               
chr12:25550016-25549793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
667-954
               

               
Cow position:
               
chr12:35231649-35231942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr12:3896358-3896666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
752-972
               

               
Cow position:
               
chr12:38819308-38819089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
763-970
               

               
Cow position:
               
chr12:25493710-25493917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 133
               

               
Conread position:
               
786-964
               

               
Cow position:
               
chr12:36200449-36200270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
787-972
               

               
Cow position:
               
chr12:5111285-5111099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
74, 8
               

               
Conread position:
               
804-968
               

               
Cow position:
               
chr12:3049886-3050047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
819-964
               

               
Cow position:
               
chr12:5167293-5167147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 138
               

               
Conread position:
               
651-966
               

               
Cow position:
               
chr13:30281384-30281055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
655-936
               

               
Cow position:
               
chr13:42059318-42059038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
658-952
               

               
Cow position:
               
chr13:1725869-1725572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
658-968
               

               
Cow position:
               
chr13:1640244-1639945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr13:10379441-10379760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
659-954
               

               
Cow position:
               
chr13:38352984-38352701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
659-962
               

               
Cow position:
               
chr13:4706141-4706448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
659-970
               

               
Cow position:
               
chr13:52833233-52833563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
659-971
               

               
Cow position:
               
chr13:179759-179446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 14
               

               
Conread position:
               
659-972
               

               
Cow position:
               
chr13:47287599-47287267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
660-911
               

               
Cow position:
               
chr13:510915-511164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
660-964
               

               
Cow position:
               
chr13:2790966-2790660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
661-926
               

               
Cow position:
               
chr13:53872142-53871876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
103, 20
               

               
Conread position:
               
661-964
               

               
Cow position:
               
chr13:7000345-7000038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
662-958
               

               
Cow position:
               
chr13:53935149-53934855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
663-972
               

               
Cow position:
               
chr13:9131043-9131351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
26, 236
               

               
Conread position:
               
667-942
               

               
Cow position:
               
chr13:11522749-11523023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
678-968
               

               
Cow position:
               
chr13:3800613-3800324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
688-954
               

               
Cow position:
               
chr13:20490057-20490322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
691-966
               

               
Cow position:
               
chr13:52078074-52077794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
705-948
               

               
Cow position:
               
chr13:9716477-9716230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
714-964
               

               
Cow position:
               
chr13:11570456-11570711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
733-962
               

               
Cow position:
               
chr13:28844436-28844665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
739-946
               

               
Cow position:
               
chr13:20837850-20838056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
790-954
               

               
Cow position:
               
chr13:60903045-60903207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
805-953
               

               
Cow position:
               
chr13:11252139-11252283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
815-971
               

               
Cow position:
               
chr13:24546963-24547117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 65
               

               
Conread position:
               
819-938
               

               
Cow position:
               
chr13:15705855-15705734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
825-971
               

               
Cow position:
               
chr13:8498821-8498678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
649-968
               

               
Cow position:
               
chr14:33098892-33099220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
649-972
               

               
Cow position:
               
chr14:41960226-41960542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
653-972
               

               
Cow position:
               
chr14:33080321-33080008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
659-945
               

               
Cow position:
               
chr14:28574673-28574962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
659-952
               

               
Cow position:
               
chr14:12952352-12952055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
659-953
               

               
Cow position:
               
chr14:5642583-5642283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
660-949
               

               
Cow position:
               
chr14:14279811-14279520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
660-970
               

               
Cow position:
               
chr14:31194193-31194513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
660-970
               

               
Cow position:
               
chr14:38419376-38419694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
661-934
               

               
Cow position:
               
chr14:37331336-37331613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
661-965
               

               
Cow position:
               
chr14:7173914-7173606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
662-952
               

               
Cow position:
               
chr14:3963688-3963381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
664-902
               

               
Cow position:
               
chr14:25432480-25432234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
667-954
               

               
Cow position:
               
chr14:18323901-18323606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
668-948
               

               
Cow position:
               
chr14:28296491-28296778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
691-940
               

               
Cow position:
               
chr14:35251555-35251298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
101, 148
               

               
Conread position:
               
691-971
               

               
Cow position:
               
chr14:38740496-38740771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
691-972
               

               
Cow position:
               
chr14:12556914-12556619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
95, 112
               

               
Conread position:
               
708-956
               

               
Cow position:
               
chr14:12163187-12162945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
723-919
               

               
Cow position:
               
chr14:11261965-11261761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 115
               

               
Conread position:
               
739-964
               

               
Cow position:
               
chr14:46807333-46807113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
162, 82
               

               
Conread position:
               
797-958
               

               
Cow position:
               
chr14:48504715-48504549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 6
               

               
Conread position:
               
824-968
               

               
Cow position:
               
chr14:37345272-37345417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
836-954
               

               
Cow position:
               
chr14:25899007-25898888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
637-849
               

               
Cow position:
               
chr15:38003485-38003690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
642-791
               

               
Cow position:
               
chr15:41472649-41472801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 122
               

               
Conread position:
               
645-945
               

               
Cow position:
               
chr15:47339772-47340092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
649-972
               

               
Cow position:
               
chr15:31883294-31882965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
658-817
               

               
Cow position:
               
chr15:5290797-5290960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
658-952
               

               
Cow position:
               
chr15:3593190-3593492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
658-966
               

               
Cow position:
               
chr15:9734762-9735082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 184
               

               
Conread position:
               
658-971
               

               
Cow position:
               
chr15:45729225-45729542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr15:41303537-41303215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
659-889
               

               
Cow position:
               
chr15:15668953-15668717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
659-971
               

               
Cow position:
               
chr15:21341525-21341826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
177, 127
               

               
Conread position:
               
660-952
               

               
Cow position:
               
chr15:22155727-22155444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
660-953
               

               
Cow position:
               
chr15:43007279-43007586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 193
               

               
Conread position:
               
661-964
               

               
Cow position:
               
chr15:5653552-5653871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr15:24153126-24153439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
663-809
               

               
Cow position:
               
chr15:6642857-6643000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
665-971
               

               
Cow position:
               
chr15:2797627-2797938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
667-874
               

               
Cow position:
               
chr15:15644320-15644533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
673-965
               

               
Cow position:
               
chr15:28153194-28153487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
673-972
               

               
Cow position:
               
chr15:22452716-22452408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
675-947
               

               
Cow position:
               
chr15:40991740-40991464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
680-972
               

               
Cow position:
               
chr15:39580761-39580481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
681-937
               

               
Cow position:
               
chr15:43932424-43932160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
691-952
               

               
Cow position:
               
chr15:7667968-7668240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
691-972
               

               
Cow position:
               
chr15:19838884-19839164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
692-919
               

               
Cow position:
               
chr15:19810950-19811173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
705-968
               

               
Cow position:
               
chr15:23273127-23273401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
708-971
               

               
Cow position:
               
chr15:13056891-13057157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
761-958
               

               
Cow position:
               
chr15:31978419-31978217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
797-968
               

               
Cow position:
               
chr15:24098579-24098412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
803-933
               

               
Cow position:
               
chr15:46468040-46468170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
645-971
               

               
Cow position:
               
chr16:5455357-5455694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
30, 149
               

               
Conread position:
               
652-963
               

               
Cow position:
               
chr16:49913089-49913400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 174
               

               
Conread position:
               
654-964
               

               
Cow position:
               
chr16:21138636-21138324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
654-972
               

               
Cow position:
               
chr16:16754401-16754724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 193
               

               
Conread position:
               
657-972
               

               
Cow position:
               
chr16:50519980-50519673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 186
               

               
Conread position:
               
657-972
               

               
Cow position:
               
chr16:51196342-51196655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 110
               

               
Conread position:
               
658-869
               

               
Cow position:
               
chr16:45232489-45232283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
199, 73
               

               
Conread position:
               
658-932
               

               
Cow position:
               
chr16:36352062-36352333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
658-942
               

               
Cow position:
               
chr16:10659569-10659277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
658-961
               

               
Cow position:
               
chr16:55439973-55440248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
199, 39
               

               
Conread position:
               
658-970
               

               
Cow position:
               
chr16:5605491-5605807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 93
               

               
Conread position:
               
659-968
               

               
Cow position:
               
chr16:25894746-25894437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
661-808
               

               
Cow position:
               
chr16:7568664-7568518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 20
               

               
Conread position:
               
661-963
               

               
Cow position:
               
chr16:46797320-46797037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
198, 78
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr16:43843136-43843456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr16:44666853-44667162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
663-931
               

               
Cow position:
               
chr16:12038677-12038960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
663-953
               

               
Cow position:
               
chr16:51416448-51416747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 275
               

               
Conread position:
               
664-881
               

               
Cow position:
               
chr16:56164651-56164426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
664-972
               

               
Cow position:
               
chr16:12020975-12020675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
665-971
               

               
Cow position:
               
chr16:25021363-25021668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
156, 197
               

               
Conread position:
               
666-966
               

               
Cow position:
               
chr16:38179014-38178704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
667-966
               

               
Cow position:
               
chr16:16918331-16918639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 184
               

               
Conread position:
               
669-896
               

               
Cow position:
               
chr16:40233438-40233197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 189
               

               
Conread position:
               
673-957
               

               
Cow position:
               
chr16:15974809-15975097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
691-858
               

               
Cow position:
               
chr16:51481835-51481671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
720-972
               

               
Cow position:
               
chr16:50660534-50660791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
763-954
               

               
Cow position:
               
chr16:45727689-45727506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 56
               

               
Conread position:
               
764-967
               

               
Cow position:
               
chr16:47887663-47887864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
776-972
               

               
Cow position:
               
chr16:50348688-50348487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 188
               

               
Conread position:
               
805-971
               

               
Cow position:
               
chr16:26669081-26668921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
652-871
               

               
Cow position:
               
chr17:3889842-3890066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 108
               

               
Conread position:
               
655-829
               

               
Cow position:
               
chr17:12479194-12479011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
656-785
               

               
Cow position:
               
chr17:30414526-30414399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
658-964
               

               
Cow position:
               
chr17:17652508-17652197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
659-945
               

               
Cow position:
               
chr17:9348954-9348659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
659-956
               

               
Cow position:
               
chr17:19366650-19366351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
659-964
               

               
Cow position:
               
chr17:39208395-39208700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
659-966
               

               
Cow position:
               
chr17:17085351-17085670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
660-904
               

               
Cow position:
               
chr17:24560125-24559875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
108, 94
               

               
Conread position:
               
661-915
               

               
Cow position:
               
chr17:15115738-15115471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
661-967
               

               
Cow position:
               
chr17:17273795-17274101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
667-952
               

               
Cow position:
               
chr17:7423166-7423458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
673-953
               

               
Cow position:
               
chr17:17134815-17134529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
673-972
               

               
Cow position:
               
chr17:16414562-16414857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
686-966
               

               
Cow position:
               
chr17:10321102-10321388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
693-972
               

               
Cow position:
               
chr17:19404197-19404469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
107, 42
               

               
Conread position:
               
706-909
               

               
Cow position:
               
chr17:17155668-17155870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 48
               

               
Conread position:
               
790-966
               

               
Cow position:
               
chr17:34889600-34889424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
647-972
               

               
Cow position:
               
chr18:51397558-51397886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
659-972
               

               
Cow position:
               
chr18:10107899-10107588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
659-972
               

               
Cow position:
               
chr18:26846661-26846335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
660-811
               

               
Cow position:
               
chr18:30900048-30900200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
660-972
               

               
Cow position:
               
chr18:54084173-54084488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
662-871
               

               
Cow position:
               
chr18:34615258-34615465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
663-972
               

               
Cow position:
               
chr18:23743376-23743069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
32, 90
               

               
Conread position:
               
667-953
               

               
Cow position:
               
chr18:39495088-39494790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
674-972
               

               
Cow position:
               
chr18:42248315-42248619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
683-943
               

               
Cow position:
               
chr18:55652806-55652546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
174, 56
               

               
Conread position:
               
684-956
               

               
Cow position:
               
chr18:27522690-27522957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
691-972
               

               
Cow position:
               
chr18:43896082-43896354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
702-972
               

               
Cow position:
               
chr18:2698164-2697898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 77
               

               
Conread position:
               
703-964
               

               
Cow position:
               
chr18:46719625-46719361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
105, 147
               

               
Conread position:
               
784-972
               

               
Cow position:
               
chr18:10118831-10118641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
819-941
               

               
Cow position:
               
chr18:224608-224730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
829-966
               

               
Cow position:
               
chr18:46728276-46728139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
658-810
               

               
Cow position:
               
chr19:4547642-4547793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
659-938
               

               
Cow position:
               
chr19:21023559-21023276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 97
               

               
Conread position:
               
660-836
               

               
Cow position:
               
chr19:43260743-43260568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 37
               

               
Conread position:
               
661-839
               

               
Cow position:
               
chr19:41622141-41622322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
141, 107
               

               
Conread position:
               
665-967
               

               
Cow position:
               
chr19:14705438-14705139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
666-972
               

               
Cow position:
               
chr19:39942297-39942610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
667-869
               

               
Cow position:
               
chr19:9577907-9578116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
668-942
               

               
Cow position:
               
chr19:48877846-48877569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
678-961
               

               
Cow position:
               
chr19:15244379-15244660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
691-924
               

               
Cow position:
               
chr19:55319745-55319981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
755-954
               

               
Cow position:
               
chr19:20398589-20398387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
798-972
               

               
Cow position:
               
chr19:33753775-33753600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
819-965
               

               
Cow position:
               
chr19:9831307-9831159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
105, 39
               

               
Conread position:
               
648-972
               

               
Cow position:
               
chr2:17827999-17827687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
648-972
               

               
Cow position:
               
chr2:23128545-23128856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
653-949
               

               
Cow position:
               
chr2:22132092-22132386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
656-968
               

               
Cow position:
               
chr2:37448684-37449013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
657-942
               

               
Cow position:
               
chr2:52625747-52625461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
657-942
               

               
Cow position:
               
chr2:61078736-61078459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
658-903
               

               
Cow position:
               
chr2:62221817-62222065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
658-916
               

               
Cow position:
               
chr2:13853355-13853099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
658-922
               

               
Cow position:
               
chr2:26440878-26441145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
110, 87
               

               
Conread position:
               
658-948
               

               
Cow position:
               
chr2:30186525-30186833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
102, 37
               

               
Conread position:
               
658-953
               

               
Cow position:
               
chr2:10981474-10981756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
658-956
               

               
Cow position:
               
chr2:31452060-31451752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
658-964
               

               
Cow position:
               
chr2:53176735-53176430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr2:42169630-42169940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
199, 33
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr2:54796910-54797228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
659-880
               

               
Cow position:
               
chr2:61909352-61909579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
659-937
               

               
Cow position:
               
chr2:3627898-3628177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
659-942
               

               
Cow position:
               
chr2:8206040-8205756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
659-964
               

               
Cow position:
               
chr2:51809033-51809344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
660-918
               

               
Cow position:
               
chr2:4694129-4693867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
660-972
               

               
Cow position:
               
chr2:66266201-66266525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 206
               

               
Conread position:
               
661-916
               

               
Cow position:
               
chr2:80441757-80441504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
32, 147
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr2:4672119-4672415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
662-950
               

               
Cow position:
               
chr2:8251713-8252011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
664-829
               

               
Cow position:
               
chr2:71531916-71532082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
664-922
               

               
Cow position:
               
chr2:85472444-85472184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
665-972
               

               
Cow position:
               
chr2:4247046-4246736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
666-963
               

               
Cow position:
               
chr2:9412552-9412255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
667-964
               

               
Cow position:
               
chr2:80806139-80806430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
667-971
               

               
Cow position:
               
chr2:30925466-30925183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
667-971
               

               
Cow position:
               
chr2:66306839-66307151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr2:66155737-66155416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
668-937
               

               
Cow position:
               
chr2:19954878-19954598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 58
               

               
Conread position:
               
673-972
               

               
Cow position:
               
chr2:33341395-33341696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
682-968
               

               
Cow position:
               
chr2:22618939-22618645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
797-972
               

               
Cow position:
               
chr2:35464495-35464322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
627-934
               

               
Cow position:
               
chr20:42034760-42035072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 118
               

               
Conread position:
               
658-802
               

               
Cow position:
               
chr20:24648564-24648708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
658-861
               

               
Cow position:
               
chr20:26458885-26459092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
659-930
               

               
Cow position:
               
chr20:19304213-19304489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
659-970
               

               
Cow position:
               
chr20:41958062-41957767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
203, 44
               

               
Conread position:
               
660-922
               

               
Cow position:
               
chr20:36937440-36937712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
660-945
               

               
Cow position:
               
chr20:22694708-22694993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
661-912
               

               
Cow position:
               
chr20:28798817-28798567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
661-919
               

               
Cow position:
               
chr20:35171847-35172106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
662-971
               

               
Cow position:
               
chr20:21831057-21831367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 8
               

               
Conread position:
               
664-968
               

               
Cow position:
               
chr20:16956513-16956834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 90
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr20:6446700-6447010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr20:28021413-28021102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 253
               

               
Conread position:
               
673-964
               

               
Cow position:
               
chr20:21260455-21260757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
674-945
               

               
Cow position:
               
chr20:16788732-16788451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
683-961
               

               
Cow position:
               
chr20:25584549-25584820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
692-888
               

               
Cow position:
               
chr20:7272592-7272396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
716-972
               

               
Cow position:
               
chr20:39042992-39043237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
740-949
               

               
Cow position:
               
chr20:767925-768143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
749-966
               

               
Cow position:
               
chr20:21153056-21153268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
774-970
               

               
Cow position:
               
chr20:27313856-27314054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
793-968
               

               
Cow position:
               
chr20:22651664-22651488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
58, 149
               

               
Conread position:
               
864-971
               

               
Cow position:
               
chr20:1745618-1745509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
867-958
               

               
Cow position:
               
chr20:26459415-26459505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
651-964
               

               
Cow position:
               
chr21:30191829-30192132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
657-882
               

               
Cow position:
               
chr21:8718986-8719217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 169
               

               
Conread position:
               
657-972
               

               
Cow position:
               
chr21:12576308-12575993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 196
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr21:41728524-41728855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
659-899
               

               
Cow position:
               
chr21:31765975-31765725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 96
               

               
Conread position:
               
659-971
               

               
Cow position:
               
chr21:30203225-30202904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
108, 216
               

               
Conread position:
               
660-912
               

               
Cow position:
               
chr21:39884363-39884101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
660-957
               

               
Cow position:
               
chr21:35028727-35029035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
666-919
               

               
Cow position:
               
chr21:11444741-11444486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 145
               

               
Conread position:
               
666-953
               

               
Cow position:
               
chr21:28731246-28730935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
667-952
               

               
Cow position:
               
chr21:41458113-41458408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
667-971
               

               
Cow position:
               
chr21:18047773-18048075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
668-954
               

               
Cow position:
               
chr21:5878604-5878898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
670-954
               

               
Cow position:
               
chr21:40526461-40526754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
706-972
               

               
Cow position:
               
chr21:5467800-5467537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
719-961
               

               
Cow position:
               
chr21:21225626-21225388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
141, 100
               

               
Conread position:
               
739-966
               

               
Cow position:
               
chr21:16898634-16898863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
745-964
               

               
Cow position:
               
chr21:34895442-34895233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
764-972
               

               
Cow position:
               
chr21:12560203-12560410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
802-970
               

               
Cow position:
               
chr21:42392177-42392010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
858-966
               

               
Cow position:
               
chr21:24417966-24417859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
651-954
               

               
Cow position:
               
chr22:45278310-45278608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 107
               

               
Conread position:
               
657-971
               

               
Cow position:
               
chr22:9616204-9615878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr22:20911990-20912305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr22:29822389-29822088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
157, 37
               

               
Conread position:
               
659-949
               

               
Cow position:
               
chr22:21203865-21204162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
660-951
               

               
Cow position:
               
chr22:7111401-7111092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
660-953
               

               
Cow position:
               
chr22:44797857-44798154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
661-965
               

               
Cow position:
               
chr22:22046209-22045903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 75
               

               
Conread position:
               
662-967
               

               
Cow position:
               
chr22:3333286-3332972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
664-879
               

               
Cow position:
               
chr22:44414781-44414988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 130
               

               
Conread position:
               
665-966
               

               
Cow position:
               
chr22:31418175-31417857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
668-969
               

               
Cow position:
               
chr22:30200679-30200984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
673-942
               

               
Cow position:
               
chr22:13998020-13997750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 114
               

               
Conread position:
               
675-956
               

               
Cow position:
               
chr22:40388036-40387755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 28
               

               
Conread position:
               
702-931
               

               
Cow position:
               
chr22:14027777-14028003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
702-963
               

               
Cow position:
               
chr22:40134696-40134953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
705-936
               

               
Cow position:
               
chr22:6013921-6014156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
753-971
               

               
Cow position:
               
chr22:15646128-15645905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 190
               

               
Conread position:
               
761-972
               

               
Cow position:
               
chr22:8594904-8594692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
33, 60
               

               
Conread position:
               
763-957
               

               
Cow position:
               
chr22:29447357-29447555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
797-953
               

               
Cow position:
               
chr22:17892135-17892290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
806-970
               

               
Cow position:
               
chr22:305103-304936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
858-963
               

               
Cow position:
               
chr22:29648006-29647901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
639-921
               

               
Cow position:
               
chr23:25553281-25552992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
657-964
               

               
Cow position:
               
chr23:13637637-13637951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
658-837
               

               
Cow position:
               
chr23:19916165-19915988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
658-942
               

               
Cow position:
               
chr23:37639242-37639525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
658-951
               

               
Cow position:
               
chr23:663094-663381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
658-964
               

               
Cow position:
               
chr23:4284097-4284399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
659-937
               

               
Cow position:
               
chr23:28387767-28387490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
661-971
               

               
Cow position:
               
chr23:36217204-36217522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
663-971
               

               
Cow position:
               
chr23:10376601-10376909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
683-968
               

               
Cow position:
               
chr23:5418904-5418618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
693-972
               

               
Cow position:
               
chr23:30551503-30551780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
726-972
               

               
Cow position:
               
chr23:8283590-8283335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 61
               

               
Conread position:
               
768-972
               

               
Cow position:
               
chr23:12036651-12036447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
776-952
               

               
Cow position:
               
chr23:12904034-12903857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
790-967
               

               
Cow position:
               
chr23:40712827-40712644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
794-965
               

               
Cow position:
               
chr23:14642050-14642226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
818-971
               

               
Cow position:
               
chr23:2726638-2726484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
651-857
               

               
Cow position:
               
chr24:44588155-44587942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 191
               

               
Conread position:
               
651-913
               

               
Cow position:
               
chr24:18416492-18416763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
658-878
               

               
Cow position:
               
chr24:122142-122365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
658-968
               

               
Cow position:
               
chr24:18793700-18793388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 95
               

               
Conread position:
               
660-807
               

               
Cow position:
               
chr24:25503911-25503764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
660-962
               

               
Cow position:
               
chr24:19614889-19614595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
660-964
               

               
Cow position:
               
chr24:3845508-3845205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
660-972
               

               
Cow position:
               
chr24:5944593-5944891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
660-972
               

               
Cow position:
               
chr24:33579684-33579384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
201, 60
               

               
Conread position:
               
664-967
               

               
Cow position:
               
chr24:29041095-29040793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 129
               

               
Conread position:
               
665-971
               

               
Cow position:
               
chr24:26574794-26574478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
667-964
               

               
Cow position:
               
chr24:36715763-36715470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr24:3674514-3674215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
668-967
               

               
Cow position:
               
chr24:14514484-14514778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 130
               

               
Conread position:
               
668-968
               

               
Cow position:
               
chr24:31421084-31420785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 248
               

               
Conread position:
               
705-964
               

               
Cow position:
               
chr24:32850860-32850597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 139
               

               
Conread position:
               
726-971
               

               
Cow position:
               
chr24:33526170-33526420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
732-972
               

               
Cow position:
               
chr24:9775770-9776006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
798-951
               

               
Cow position:
               
chr24:35653500-35653349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 109
               

               
Conread position:
               
819-971
               

               
Cow position:
               
chr24:10761028-10760878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
834-972
               

               
Cow position:
               
chr24:35658412-35658550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
632-900
               

               
Cow position:
               
chr25:12494552-12494819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 97
               

               
Conread position:
               
634-972
               

               
Cow position:
               
chr25:11962441-11962097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
649-907
               

               
Cow position:
               
chr25:16858553-16858813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
653-964
               

               
Cow position:
               
chr25:11849443-11849759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
654-972
               

               
Cow position:
               
chr25:29309494-29309172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 251
               

               
Conread position:
               
655-922
               

               
Cow position:
               
chr25:36632467-36632720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
657-942
               

               
Cow position:
               
chr25:11526441-11526726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
658-964
               

               
Cow position:
               
chr25:31515819-31515508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 285
               

               
Conread position:
               
658-967
               

               
Cow position:
               
chr25:31676979-31676674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
175, 38
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr25:17418123-17418428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
661-913
               

               
Cow position:
               
chr25:4078731-4078482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
661-971
               

               
Cow position:
               
chr25:21960760-21961072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
668-971
               

               
Cow position:
               
chr25:35560048-35560356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
670-909
               

               
Cow position:
               
chr25:41052234-41051991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 85
               

               
Conread position:
               
692-972
               

               
Cow position:
               
chr25:16578160-16578441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
113, 134
               

               
Conread position:
               
707-895
               

               
Cow position:
               
chr25:20249474-20249278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
726-971
               

               
Cow position:
               
chr25:14959517-14959765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
811-965
               

               
Cow position:
               
chr25:41104112-41104264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
657-936
               

               
Cow position:
               
chr26:14166086-14165809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
657-954
               

               
Cow position:
               
chr26:11793636-11793338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
657-964
               

               
Cow position:
               
chr26:7330006-7329711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
658-966
               

               
Cow position:
               
chr26:13008604-13008922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
659-957
               

               
Cow position:
               
chr26:16885010-16884711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
659-972
               

               
Cow position:
               
chr26:9822815-9823124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
660-942
               

               
Cow position:
               
chr26:14936942-14937227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
660-966
               

               
Cow position:
               
chr26:26665481-26665789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 167
               

               
Conread position:
               
663-961
               

               
Cow position:
               
chr26:29315322-29315017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 6
               

               
Conread position:
               
665-874
               

               
Cow position:
               
chr26:13026972-13027182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
666-952
               

               
Cow position:
               
chr26:19101965-19101682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
666-964
               

               
Cow position:
               
chr26:7171710-7172009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 7
               

               
Conread position:
               
667-942
               

               
Cow position:
               
chr26:4260686-4260961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
668-971
               

               
Cow position:
               
chr26:2724827-2725114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
100, 5
               

               
Conread position:
               
677-938
               

               
Cow position:
               
chr26:11304398-11304137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
688-965
               

               
Cow position:
               
chr26:27702111-27701833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 66
               

               
Conread position:
               
691-954
               

               
Cow position:
               
chr26:15894023-15893769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
691-967
               

               
Cow position:
               
chr26:15514796-15515064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
693-919
               

               
Cow position:
               
chr26:2462505-2462280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
704-972
               

               
Cow position:
               
chr26:11331461-11331196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
705-971
               

               
Cow position:
               
chr26:16511048-16510778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
724-972
               

               
Cow position:
               
chr26:14454944-14455193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
68, 155
               

               
Conread position:
               
732-972
               

               
Cow position:
               
chr26:26158498-26158259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 93
               

               
Conread position:
               
737-970
               

               
Cow position:
               
chr26:3869139-3869365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
739-972
               

               
Cow position:
               
chr26:428779-429017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
72, 164
               

               
Conread position:
               
762-939
               

               
Cow position:
               
chr26:21466460-21466647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
767-972
               

               
Cow position:
               
chr26:14428984-14429194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
774-954
               

               
Cow position:
               
chr26:3526985-3526798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
650-896
               

               
Cow position:
               
chr27:4932648-4932393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
656-956
               

               
Cow position:
               
chr27:1087943-1088251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr27:26349261-26348947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
659-900
               

               
Cow position:
               
chr27:16623435-16623672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
660-847
               

               
Cow position:
               
chr27:21239285-21239478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
660-971
               

               
Cow position:
               
chr27:18205051-18205347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
661-955
               

               
Cow position:
               
chr27:2852141-2851848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
664-965
               

               
Cow position:
               
chr27:14532644-14532939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
667-953
               

               
Cow position:
               
chr27:11629464-11629756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
51, 159
               

               
Conread position:
               
698-964
               

               
Cow position:
               
chr27:25992316-25992051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
762-972
               

               
Cow position:
               
chr27:23984265-23984473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
805-966
               

               
Cow position:
               
chr27:10145719-10145875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
818-968
               

               
Cow position:
               
chr27:15632276-15632426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
820-972
               

               
Cow position:
               
chr27:951975-951823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
835-965
               

               
Cow position:
               
chr27:9253842-9253973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
645-790
               

               
Cow position:
               
chr28:15971894-15972039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
645-962
               

               
Cow position:
               
chr28:28600657-28600330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
646-947
               

               
Cow position:
               
chr28:30390276-30390582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
23, 163
               

               
Conread position:
               
648-823
               

               
Cow position:
               
chr28:19216794-19216614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
651-966
               

               
Cow position:
               
chr28:7656668-7656354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
658-971
               

               
Cow position:
               
chr28:11543194-11543504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 131
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr28:14651887-14651570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
659-962
               

               
Cow position:
               
chr28:25307245-25306943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 43
               

               
Conread position:
               
661-971
               

               
Cow position:
               
chr28:15372692-15372398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
132, 40
               

               
Conread position:
               
664-899
               

               
Cow position:
               
chr28:15516833-15517060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 25
               

               
Conread position:
               
667-968
               

               
Cow position:
               
chr28:20037010-20036703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
150, 28
               

               
Conread position:
               
679-901
               

               
Cow position:
               
chr28:15724963-15725190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
704-971
               

               
Cow position:
               
chr28:23112163-23111886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
706-936
               

               
Cow position:
               
chr28:24330236-24330467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
715-971
               

               
Cow position:
               
chr28:22440435-22440173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 139
               

               
Conread position:
               
732-970
               

               
Cow position:
               
chr28:21366674-21366919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
785-972
               

               
Cow position:
               
chr28:13719647-13719461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
834-967
               

               
Cow position:
               
chr28:16700134-16700000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
644-972
               

               
Cow position:
               
chr29:24615683-24615362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
216, 115
               

               
Conread position:
               
652-942
               

               
Cow position:
               
chr29:24778603-24778893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 43
               

               
Conread position:
               
656-966
               

               
Cow position:
               
chr29:29137913-29138232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
658-797
               

               
Cow position:
               
chr29:24021078-24020939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
658-966
               

               
Cow position:
               
chr29:40548033-40547729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
659-947
               

               
Cow position:
               
chr29:9852094-9852394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
660-968
               

               
Cow position:
               
chr29:7828177-7828488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
661-935
               

               
Cow position:
               
chr29:33010076-33009799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
661-968
               

               
Cow position:
               
chr29:4890344-4890655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
661-971
               

               
Cow position:
               
chr29:37709719-37710007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
662-972
               

               
Cow position:
               
chr29:18692844-18693152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr29:22247341-22247661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
673-895
               

               
Cow position:
               
chr29:14601792-14601559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
680-938
               

               
Cow position:
               
chr29:21263233-21263491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
6, 26
               

               
Conread position:
               
706-877
               

               
Cow position:
               
chr29:3185340-3185510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
149, 54
               

               
Conread position:
               
715-972
               

               
Cow position:
               
chr29:36037039-36037296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
720-968
               

               
Cow position:
               
chr29:23908890-23908634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
71, 147
               

               
Conread position:
               
724-972
               

               
Cow position:
               
chr29:6013949-6013697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
733-968
               

               
Cow position:
               
chr29:26423660-26423903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
74, 216
               

               
Conread position:
               
795-972
               

               
Cow position:
               
chr29:18719867-18720046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
797-971
               

               
Cow position:
               
chr29:4221502-4221327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
800-972
               

               
Cow position:
               
chr29:38620543-38620716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 160
               

               
Conread position:
               
829-966
               

               
Cow position:
               
chr29:4261460-4261323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
644-911
               

               
Cow position:
               
chr3:41316521-41316239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 272
               

               
Conread position:
               
651-966
               

               
Cow position:
               
chr3:80138508-80138827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
654-934
               

               
Cow position:
               
chr3:64184977-64184690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
656-936
               

               
Cow position:
               
chr3:1750700-1750400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
656-971
               

               
Cow position:
               
chr3:73813083-73812749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
657-882
               

               
Cow position:
               
chr3:11653534-11653774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
658-885
               

               
Cow position:
               
chr3:16867601-16867824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
134, 42
               

               
Conread position:
               
658-921
               

               
Cow position:
               
chr3:78171705-78171967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
164, 61
               

               
Conread position:
               
658-942
               

               
Cow position:
               
chr3:13259235-13259520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
658-966
               

               
Cow position:
               
chr3:37288971-37289290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
32, 241
               

               
Conread position:
               
660-876
               

               
Cow position:
               
chr3:42137184-42136967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
116, 103
               

               
Conread position:
               
660-945
               

               
Cow position:
               
chr3:37106435-37106723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
660-956
               

               
Cow position:
               
chr3:30788608-30788904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
660-970
               

               
Cow position:
               
chr3:54779636-54779335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
62, 135
               

               
Conread position:
               
661-948
               

               
Cow position:
               
chr3:71514593-71514868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
661-968
               

               
Cow position:
               
chr3:40658798-40659102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
663-968
               

               
Cow position:
               
chr3:34463925-34464241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
666-942
               

               
Cow position:
               
chr3:19559692-19559974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
667-948
               

               
Cow position:
               
chr3:66614235-66614519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
668-965
               

               
Cow position:
               
chr3:26659086-26659378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
673-947
               

               
Cow position:
               
chr3:6188813-6188535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
674-972
               

               
Cow position:
               
chr3:31924379-31924674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
675-934
               

               
Cow position:
               
chr3:6092347-6092619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
676-938
               

               
Cow position:
               
chr3:41157116-41157377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
680-919
               

               
Cow position:
               
chr3:40853270-40853031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
688-946
               

               
Cow position:
               
chr3:16169804-16170062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
691-849
               

               
Cow position:
               
chr3:8852665-8852506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
691-968
               

               
Cow position:
               
chr3:2054563-2054289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
701-972
               

               
Cow position:
               
chr3:76931140-76931430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 208
               

               
Conread position:
               
702-972
               

               
Cow position:
               
chr3:69419700-69419978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
44, 162
               

               
Conread position:
               
704-965
               

               
Cow position:
               
chr3:24846372-24846107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
712-962
               

               
Cow position:
               
chr3:56565643-56565391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 41
               

               
Conread position:
               
714-941
               

               
Cow position:
               
chr3:10214848-10215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 64
               

               
Conread position:
               
715-954
               

               
Cow position:
               
chr3:25803353-25803107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
721-933
               

               
Cow position:
               
chr3:11790300-11790077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
738-971
               

               
Cow position:
               
chr3:1350245-1350019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
768-971
               

               
Cow position:
               
chr3:18855873-18855674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
804-968
               

               
Cow position:
               
chr3:3283174-3283337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
815-954
               

               
Cow position:
               
chr3:48498618-48498757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 117
               

               
Conread position:
               
819-971
               

               
Cow position:
               
chr3:73294559-73294403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
645-967
               

               
Cow position:
               
chr4:5499501-5499170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
645-970
               

               
Cow position:
               
chr4:54106930-54107252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
651-968
               

               
Cow position:
               
chr4:58195001-58194684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
654-899
               

               
Cow position:
               
chr4:44737922-44737667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
655-942
               

               
Cow position:
               
chr4:27547631-27547917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
657-963
               

               
Cow position:
               
chr4:13919842-13920151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
657-966
               

               
Cow position:
               
chr4:7584370-7584049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
658-945
               

               
Cow position:
               
chr4:34535090-34535354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
658-964
               

               
Cow position:
               
chr4:38938614-38938905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
658-966
               

               
Cow position:
               
chr4:7879080-7879375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
659-958
               

               
Cow position:
               
chr4:53970569-53970268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
659-964
               

               
Cow position:
               
chr4:43753446-43753120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
659-972
               

               
Cow position:
               
chr4:2113907-2114213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
106, 38
               

               
Conread position:
               
660-953
               

               
Cow position:
               
chr4:30815328-30815033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
660-967
               

               
Cow position:
               
chr4:5557571-5557252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
660-971
               

               
Cow position:
               
chr4:3245232-3244923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
150, 43
               

               
Conread position:
               
661-965
               

               
Cow position:
               
chr4:30489025-30488717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chr4:46280320-46280632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
662-954
               

               
Cow position:
               
chr4:42365981-42366265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
662-956
               

               
Cow position:
               
chr4:6803645-6803346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
667-836
               

               
Cow position:
               
chr4:59613712-59613546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
125, 103
               

               
Conread position:
               
667-874
               

               
Cow position:
               
chr4:31599376-31599166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
667-928
               

               
Cow position:
               
chr4:10579470-10579206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
670-954
               

               
Cow position:
               
chr4:48504069-48503789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 25
               

               
Conread position:
               
674-957
               

               
Cow position:
               
chr4:33294771-33295051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
676-969
               

               
Cow position:
               
chr4:7334158-7333861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 207
               

               
Conread position:
               
678-962
               

               
Cow position:
               
chr4:46151221-46151511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
690-972
               

               
Cow position:
               
chr4:20291231-20290949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
691-927
               

               
Cow position:
               
chr4:40364698-40364927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
691-971
               

               
Cow position:
               
chr4:30049034-30048761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
693-964
               

               
Cow position:
               
chr4:44683951-44684223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
115, 87
               

               
Conread position:
               
699-951
               

               
Cow position:
               
chr4:21570882-21571143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 64
               

               
Conread position:
               
704-967
               

               
Cow position:
               
chr4:30196441-30196709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
720-965
               

               
Cow position:
               
chr4:52013509-52013267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
721-961
               

               
Cow position:
               
chr4:29037483-29037241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
739-901
               

               
Cow position:
               
chr4:8188681-8188843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 6
               

               
Conread position:
               
799-972
               

               
Cow position:
               
chr4:5916285-5916114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
804-956
               

               
Cow position:
               
chr4:59884190-59884345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
823-970
               

               
Cow position:
               
chr4:32813417-32813565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 133
               

               
Conread position:
               
828-968
               

               
Cow position:
               
chr4:26985388-26985252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
829-961
               

               
Cow position:
               
chr4:32838430-32838560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
652-906
               

               
Cow position:
               
chr5:57950795-57951040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
655-953
               

               
Cow position:
               
chr5:37669165-37668857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 239
               

               
Conread position:
               
656-916
               

               
Cow position:
               
chr5:13555998-13555737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
656-971
               

               
Cow position:
               
chr5:8985423-8985739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
657-949
               

               
Cow position:
               
chr5:40866211-40865919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
658-933
               

               
Cow position:
               
chr5:9675283-9675564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
659-810
               

               
Cow position:
               
chr5:60902498-60902344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
659-944
               

               
Cow position:
               
chr5:11954049-11954321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
106, 95
               

               
Conread position:
               
661-927
               

               
Cow position:
               
chr5:38927081-38927354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
661-970
               

               
Cow position:
               
chr5:41651888-41652198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
662-790
               

               
Cow position:
               
chr5:47744002-47743873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
662-810
               

               
Cow position:
               
chr5:15616831-15616976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
102, 34
               

               
Conread position:
               
662-953
               

               
Cow position:
               
chr5:13940748-13941047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
664-839
               

               
Cow position:
               
chr5:28881161-28880980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
666-968
               

               
Cow position:
               
chr5:34565426-34565732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
667-953
               

               
Cow position:
               
chr5:49133768-49133484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr5:64793978-64793668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
668-946
               

               
Cow position:
               
chr5:32058549-32058265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
668-968
               

               
Cow position:
               
chr5:56273748-56274050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 86
               

               
Conread position:
               
674-937
               

               
Cow position:
               
chr5:55079256-55078987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
674-947
               

               
Cow position:
               
chr5:45567576-45567300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
678-966
               

               
Cow position:
               
chr5:46756126-46755835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
683-899
               

               
Cow position:
               
chr5:70868234-70868016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
688-966
               

               
Cow position:
               
chr5:22648407-22648117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
691-971
               

               
Cow position:
               
chr5:48834324-48834046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 8
               

               
Conread position:
               
699-811
               

               
Cow position:
               
chr5:19360913-19360801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
704-965
               

               
Cow position:
               
chr5:59510500-59510232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
705-911
               

               
Cow position:
               
chr5:29570770-29570973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
706-972
               

               
Cow position:
               
chr5:35528791-35528531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
707-964
               

               
Cow position:
               
chr5:35262690-35262431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
96, 139
               

               
Conread position:
               
768-970
               

               
Cow position:
               
chr5:38380317-38380112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 108
               

               
Conread position:
               
768-972
               

               
Cow position:
               
chr5:12840328-12840535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
774-972
               

               
Cow position:
               
chr5:66166946-66166748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
793-956
               

               
Cow position:
               
chr5:23722704-23722868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
797-964
               

               
Cow position:
               
chr5:60187024-60186858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
63, 131
               

               
Conread position:
               
807-963
               

               
Cow position:
               
chr5:61354741-61354898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
818-964
               

               
Cow position:
               
chr5:22069228-22069082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
44, 142
               

               
Conread position:
               
837-967
               

               
Cow position:
               
chr5:28878992-28878861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
645-966
               

               
Cow position:
               
chr6:6055054-6054734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
645-971
               

               
Cow position:
               
chr6:30499457-30499121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
650-949
               

               
Cow position:
               
chr6:55387624-55387322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
655-972
               

               
Cow position:
               
chr6:45923913-45923609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
205, 47
               

               
Conread position:
               
657-972
               

               
Cow position:
               
chr6:6124511-6124191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
658-867
               

               
Cow position:
               
chr6:31941949-31941729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
658-964
               

               
Cow position:
               
chr6:38382748-38383061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
658-968
               

               
Cow position:
               
chr6:17739735-17740054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 166
               

               
Conread position:
               
658-971
               

               
Cow position:
               
chr6:52188516-52188849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
659-964
               

               
Cow position:
               
chr6:56091209-56090894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 311
               

               
Conread position:
               
660-901
               

               
Cow position:
               
chr6:1683951-1684176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
660-926
               

               
Cow position:
               
chr6:12976898-12976619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
660-951
               

               
Cow position:
               
chr6:20407192-20406890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
660-954
               

               
Cow position:
               
chr6:19441149-19440857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
661-808
               

               
Cow position:
               
chr6:69190482-69190336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
661-937
               

               
Cow position:
               
chr6:27991958-27992229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 34
               

               
Conread position:
               
662-957
               

               
Cow position:
               
chr6:15664928-15665224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
662-972
               

               
Cow position:
               
chr6:22193100-22193413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 41
               

               
Conread position:
               
666-972
               

               
Cow position:
               
chr6:35120986-35121287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 29
               

               
Conread position:
               
667-961
               

               
Cow position:
               
chr6:19748228-19748540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
673-968
               

               
Cow position:
               
chr6:16236431-16236732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 144
               

               
Conread position:
               
674-942
               

               
Cow position:
               
chr6:6164944-6164668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
674-964
               

               
Cow position:
               
chr6:2404503-2404797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 53
               

               
Conread position:
               
678-971
               

               
Cow position:
               
chr6:19144700-19144990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
680-954
               

               
Cow position:
               
chr6:47215336-47215053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
682-967
               

               
Cow position:
               
chr6:30945757-30946041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
689-879
               

               
Cow position:
               
chr6:20813082-20813277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
118, 53
               

               
Conread position:
               
694-972
               

               
Cow position:
               
chr6:43764090-43763798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 160
               

               
Conread position:
               
701-931
               

               
Cow position:
               
chr6:66360645-66360414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
738-971
               

               
Cow position:
               
chr6:17627274-17627514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
779-972
               

               
Cow position:
               
chr6:39954863-39954667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
791-953
               

               
Cow position:
               
chr6:64254859-64254704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
66, 123
               

               
Conread position:
               
816-971
               

               
Cow position:
               
chr6:8930953-8931108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
645-971
               

               
Cow position:
               
chr7:29623144-29622826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
128, 180
               

               
Conread position:
               
652-916
               

               
Cow position:
               
chr7:37743520-37743791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
658-877
               

               
Cow position:
               
chr7:65371174-65370946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 140
               

               
Conread position:
               
658-948
               

               
Cow position:
               
chr7:57536288-57536006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr7:9585719-9586032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
659-871
               

               
Cow position:
               
chr7:97403-97632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
659-971
               

               
Cow position:
               
chr7:11442281-11441977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
660-954
               

               
Cow position:
               
chr7:35302894-35302609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
660-972
               

               
Cow position:
               
chr7:58996021-58995699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
661-945
               

               
Cow position:
               
chr7:35181515-35181236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
662-917
               

               
Cow position:
               
chr7:10762866-10762603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
662-965
               

               
Cow position:
               
chr7:49893067-49893369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr7:26180473-26180782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
668-855
               

               
Cow position:
               
chr7:47069838-47070021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
681-972
               

               
Cow position:
               
chr7:12336516-12336809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
686-963
               

               
Cow position:
               
chr7:1667064-1666787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
694-972
               

               
Cow position:
               
chr7:18667768-18667486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 148
               

               
Conread position:
               
705-967
               

               
Cow position:
               
chr7:12406955-12406696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 39
               

               
Conread position:
               
721-954
               

               
Cow position:
               
chr7:40632796-40632569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
724-954
               

               
Cow position:
               
chr7:48751360-48751595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
810-964
               

               
Cow position:
               
chr7:19604126-19604279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 55
               

               
Conread position:
               
823-972
               

               
Cow position:
               
chr7:39599980-39600132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
825-950
               

               
Cow position:
               
chr7:62067252-62067119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
634-954
               

               
Cow position:
               
chr8:41411831-41411523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
649-942
               

               
Cow position:
               
chr8:42818126-42817834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
649-972
               

               
Cow position:
               
chr8:59061953-59061616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
654-963
               

               
Cow position:
               
chr8:16757139-16757451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
655-916
               

               
Cow position:
               
chr8:25378515-25378770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
657-972
               

               
Cow position:
               
chr8:42120006-42120320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
658-961
               

               
Cow position:
               
chr8:51442977-51443279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
658-968
               

               
Cow position:
               
chr8:18908376-18908069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr8:24476851-24477165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 152
               

               
Conread position:
               
659-942
               

               
Cow position:
               
chr8:42135111-42135377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
198, 14
               

               
Conread position:
               
659-945
               

               
Cow position:
               
chr8:46280146-46279855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
147, 271
               

               
Conread position:
               
659-964
               

               
Cow position:
               
chr8:27558110-27558410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
157, 43
               

               
Conread position:
               
659-971
               

               
Cow position:
               
chr8:54157270-54156970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
659-972
               

               
Cow position:
               
chr8:9314334-9314021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
660-964
               

               
Cow position:
               
chr8:26877725-26877408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
661-905
               

               
Cow position:
               
chr8:4285587-4285836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
661-934
               

               
Cow position:
               
chr8:11860478-11860757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
147, 35
               

               
Conread position:
               
661-971
               

               
Cow position:
               
chr8:23329641-23329332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 48
               

               
Conread position:
               
663-891
               

               
Cow position:
               
chr8:18387373-18387622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
664-959
               

               
Cow position:
               
chr8:7546706-7547006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 209
               

               
Conread position:
               
664-968
               

               
Cow position:
               
chr8:60323982-60324283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
664-972
               

               
Cow position:
               
chr8:15516387-15516079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
667-955
               

               
Cow position:
               
chr8:36608468-36608763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
667-964
               

               
Cow position:
               
chr8:49684420-49684115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
667-972
               

               
Cow position:
               
chr8:37691900-37691583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
674-810
               

               
Cow position:
               
chr8:13929356-13929215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
674-964
               

               
Cow position:
               
chr8:59472608-59472898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
687-972
               

               
Cow position:
               
chr8:8723874-8724166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
688-972
               

               
Cow position:
               
chr8:21945983-21945698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
691-921
               

               
Cow position:
               
chr8:32174065-32173834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
695-972
               

               
Cow position:
               
chr8:25157220-25156938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
699-957
               

               
Cow position:
               
chr8:41939431-41939694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 155
               

               
Conread position:
               
705-966
               

               
Cow position:
               
chr8:9809679-9809413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
726-972
               

               
Cow position:
               
chr8:34662909-34662654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 27
               

               
Conread position:
               
735-968
               

               
Cow position:
               
chr8:21813764-21813987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
738-971
               

               
Cow position:
               
chr8:13559888-13559666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
774-959
               

               
Cow position:
               
chr8:3553945-3553761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
778-953
               

               
Cow position:
               
chr8:27501315-27501488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
793-972
               

               
Cow position:
               
chr8:27076341-27076514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
795-971
               

               
Cow position:
               
chr8:22519146-22518973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
797-957
               

               
Cow position:
               
chr8:10994105-10994265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
798-972
               

               
Cow position:
               
chr8:23877218-23877395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
815-971
               

               
Cow position:
               
chr8:27534348-27534505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
819-972
               

               
Cow position:
               
chr8:10844459-10844609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
631-972
               

               
Cow position:
               
chr9:44445942-44446296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
637-966
               

               
Cow position:
               
chr9:38877641-38877963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
641-971
               

               
Cow position:
               
chr9:44299620-44299291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
643-906
               

               
Cow position:
               
chr9:7054443-7054178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
650-964
               

               
Cow position:
               
chr9:31580042-31580367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 195
               

               
Conread position:
               
654-937
               

               
Cow position:
               
chr9:35224386-35224674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
656-920
               

               
Cow position:
               
chr9:43076606-43076333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 166
               

               
Conread position:
               
658-952
               

               
Cow position:
               
chr9:41903891-41904177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
658-972
               

               
Cow position:
               
chr9:39727281-39727604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 176
               

               
Conread position:
               
660-864
               

               
Cow position:
               
chr9:50777508-50777293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
660-958
               

               
Cow position:
               
chr9:18767540-18767833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
660-965
               

               
Cow position:
               
chr9:39742046-39742339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
664-961
               

               
Cow position:
               
chr9:11045537-11045838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
666-939
               

               
Cow position:
               
chr9:27961351-27961637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
666-972
               

               
Cow position:
               
chr9:5607451-5607753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
676-942
               

               
Cow position:
               
chr9:22939924-22940179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 7
               

               
Conread position:
               
688-972
               

               
Cow position:
               
chr9:51335689-51335415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
691-967
               

               
Cow position:
               
chr9:7328054-7327788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
702-956
               

               
Cow position:
               
chr9:33078510-33078247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
708-888
               

               
Cow position:
               
chr9:26479847-26480023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
738-967
               

               
Cow position:
               
chr9:9579357-9579122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
64, 151
               

               
Conread position:
               
745-972
               

               
Cow position:
               
chr9:48373874-48374107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
790-942
               

               
Cow position:
               
chr9:31540330-31540174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
796-968
               

               
Cow position:
               
chr9:43536907-43537078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
813-972
               

               
Cow position:
               
chr9:23108070-23107914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
822-965
               

               
Cow position:
               
chr9:41296700-41296842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 125
               

               
Conread position:
               
828-972
               

               
Cow position:
               
chr9:36839075-36838932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
612-964
               

               
Cow position:
               
chrX:10762957-10763286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
180, 18
               

               
Conread position:
               
645-918
               

               
Cow position:
               
chrX:18231107-18231381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
651-968
               

               
Cow position:
               
chrX:32181728-32182051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 171
               

               
Conread position:
               
655-972
               

               
Cow position:
               
chrX:807494-807182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
657-968
               

               
Cow position:
               
chrX:18469322-18469011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
658-967
               

               
Cow position:
               
chrX:20715624-20715936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
658-968
               

               
Cow position:
               
chrX:17516822-17516514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
658-971
               

               
Cow position:
               
chrX:9298580-9298884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
11, 147
               

               
Conread position:
               
659-945
               

               
Cow position:
               
chrX:11974072-11973781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
660-804
               

               
Cow position:
               
chrX:4319236-4319089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
660-936
               

               
Cow position:
               
chrX:32049569-32049296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
660-972
               

               
Cow position:
               
chrX:33816443-33816131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
661-954
               

               
Cow position:
               
chrX:42219158-42218861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
661-972
               

               
Cow position:
               
chrX:22013719-22013398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 62
               

               
Conread position:
               
662-949
               

               
Cow position:
               
chrX:20734772-20734477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
666-962
               

               
Cow position:
               
chrX:28215719-28215439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
666-968
               

               
Cow position:
               
chrX:38114473-38114169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
673-941
               

               
Cow position:
               
chrX:17200996-17200722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
673-970
               

               
Cow position:
               
chrX:25261161-25261464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 83
               

               
Conread position:
               
673-972
               

               
Cow position:
               
chrX:37139896-37139594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 204
               

               
Conread position:
               
674-881
               

               
Cow position:
               
chrX:21262393-21262596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
185, 21
               

               
Conread position:
               
675-882
               

               
Cow position:
               
chrX:6834506-6834719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
675-949
               

               
Cow position:
               
chrX:2649829-2650109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
691-954
               

               
Cow position:
               
chrX:22859848-22859579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
691-964
               

               
Cow position:
               
chrX:8827273-8827547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
691-972
               

               
Cow position:
               
chrX:4298576-4298858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
114, 48
               

               
Conread position:
               
697-971
               

               
Cow position:
               
chrX:16300462-16300733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
700-905
               

               
Cow position:
               
chrX:24019894-24020093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
159, 98
               

               
Conread position:
               
702-972
               

               
Cow position:
               
chrX:7693221-7693486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
119, 81
               

               
Conread position:
               
721-956
               

               
Cow position:
               
chrX:25164029-25163795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
739-919
               

               
Cow position:
               
chrX:41483817-41483631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
72, 111
               

               
Conread position:
               
777-935
               

               
Cow position:
               
chrX:24525163-24525002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
834-966
               

               
Cow position:
               
chrX:24560144-24560012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 123