Cow genome map
| Conread name: | Ss1.1-rfce12c_l6.5.5 |
| Conread position: | 240-945 |
| Cow position: | chr10:51572772-51572049 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 440 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 141, 118 |
| Conread position: | 1112-1809 |
| Cow position: | chr10:51571894-51571179 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 430 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 158, 154 |
| Conread position: | 1558-1822 |
| Cow position: | chr11:77077253-77076986 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 2439-2721 |
| Cow position: | chr13:47963296-47963008 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 99 |
| Conread position: | 635-775 |
| Cow position: | chr15:23817805-23817665 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 778-1335 |
| Cow position: | chr15:23817573-23817025 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 1529-1708 |
| Cow position: | chr15:23816374-23816195 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1600-2394 |
| Cow position: | chr17:16246057-16245256 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 717 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 568, 546 |
| Conread position: | 2391-2760 |
| Cow position: | chr17:16245182-16244820 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 17 |
| Conread position: | 227-1788 |
| Cow position: | chr23:23436097-23434515 (view UCSC Genome Browser custom track) |
| Alignm length: | 1610 |
| Alignm identity: | 993 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 126 |
| Conread position: | 581-948 |
| Cow position: | chr23:23438775-23439148 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 1112-1789 |
| Cow position: | chr23:23439300-23439995 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 425 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 2198-2361 |
| Cow position: | chr28:18514505-18514680 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 227-866 |
| Cow position: | chr3:47920043-47920686 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 375 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 228-1021 |
| Cow position: | chr3:19185639-19184833 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 480 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 1173-1788 |
| Cow position: | chr3:19184693-19184057 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 136 |
| Conread position: | 1365-1789 |
| Cow position: | chr3:47921018-47921441 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 351, 82 |
| Conread position: | 1-155 |
| Cow position: | chr7:35016937-35016781 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 214-304 |
| Cow position: | chr7:35015129-35015039 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-483 |
| Cow position: | chr7:35014061-35013878 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-608 |
| Cow position: | chr7:35013137-35013010 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 120 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 606-683 |
| Cow position: | chr7:35012101-35012024 (view UCSC Genome Browser custom track) |
| Alignm length: | 78 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 681-789 |
| Cow position: | chr7:35011942-35011834 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 790-952 |
| Cow position: | chr7:35011235-35011073 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 951-1045 |
| Cow position: | chr7:35010093-35009999 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1041-1257 |
| Cow position: | chr7:35006951-35006735 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1254-1485 |
| Cow position: | chr7:35005625-35005394 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1482-1597 |
| Cow position: | chr7:35004531-35004416 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1580-1706 |
| Cow position: | chr7:35003683-35003556 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 121 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1707-1802 |
| Cow position: | chr7:35002898-35002803 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1800-1893 |
| Cow position: | chr7:35002598-35002505 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1893-2035 |
| Cow position: | chr7:35002323-35002181 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 134 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2019-2394 |
| Cow position: | chr7:35001922-35001541 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 6 |
| Conread position: | 2387-2760 |
| Cow position: | chr7:35001471-35001106 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 21 |