Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rgul0101_i8.5
        

               Conread position:
               1-375
               

               Cow position:
               chr10:9010210-9009835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               12, 28
               

               Conread position:
               1-508
               

               Cow position:
               chr10:9010378-9009870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 143
               

               Conread position:
               1-594
               

               Cow position:
               chr10:9010546-9009949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 119
               

               Conread position:
               16-522
               

               Cow position:
               chr10:8996886-8996381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               488, 0
               

               Conread position:
               19-517
               

               Cow position:
               chr10:8996547-8996050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 181
               

               Conread position:
               20-397
               

               Cow position:
               chr10:8996378-8996001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-442
               

               Cow position:
               chr10:9010274-9009852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               52, 26
               

               Conread position:
               20-636
               

               Cow position:
               chr10:8996630-8996007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               497, 542
               

               Conread position:
               21-494
               

               Cow position:
               chr10:21939113-21938643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               288
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               24-636
               

               Cow position:
               chr10:8996710-8996091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               489, 516
               

               Conread position:
               35-389
               

               Cow position:
               chr10:9031310-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               35-512
               

               Cow position:
               chr10:8996783-8996306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               40-422
               

               Cow position:
               chr10:9031231-9031613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               44-508
               

               Cow position:
               chr10:21939174-21938713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               294
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               67, 76
               

               Conread position:
               98-600
               

               Cow position:
               chr10:8996888-8996382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 21
               

               Conread position:
               119-512
               

               Cow position:
               chr10:9010511-9010118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 77
               

               Conread position:
               124-560
               

               Cow position:
               chr10:9031231-9031667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 66
               

               Conread position:
               138-512
               

               Cow position:
               chr10:21939164-21938790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               37, 52
               

               Conread position:
               163-593
               

               Cow position:
               chr10:21939223-21938789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               263
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               194, 185
               

               Conread position:
               164-555
               

               Cow position:
               chr10:9010550-9010156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               319, 303
               

               Conread position:
               205-507
               

               Cow position:
               chr10:9031228-9031529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               72, 82
               

               Conread position:
               213-597
               

               Cow position:
               chr10:9010583-9010197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               70, 16
               

               Conread position:
               247-525
               

               Cow position:
               chr10:21939223-21938946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               257, 0
               

               Conread position:
               289-573
               

               Cow position:
               chr10:9031228-9031514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               228, 273
               

               Conread position:
               304-594
               

               Cow position:
               chr10:8996934-8996641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               209, 258
               

               Conread position:
               16-314
               

               Cow position:
               chr11:74554473-74554175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               160, 170
               

               Conread position:
               19-512
               

               Cow position:
               chr11:74555058-74554565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               19-516
               

               Cow position:
               chr11:74554806-74554309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 181
               

               Conread position:
               19-599
               

               Cow position:
               chr11:74554974-74554390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 179
               

               Conread position:
               21-398
               

               Cow position:
               chr11:74554552-74554175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 80
               

               Conread position:
               21-512
               

               Cow position:
               chr11:74554720-74554229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 248
               

               Conread position:
               35-463
               

               Cow position:
               chr11:74554622-74554194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               49-512
               

               Cow position:
               chr11:74555111-74554649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               155, 9
               

               Conread position:
               142-507
               

               Cow position:
               chr11:74555103-74554738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 10
               

               Conread position:
               1-512
               

               Cow position:
               chr13:39984011-39984523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               1-520
               

               Cow position:
               chr13:39984347-39984866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 504
               

               Conread position:
               1-531
               

               Cow position:
               chr13:39983927-39984456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 96
               

               Conread position:
               1-573
               

               Cow position:
               chr13:39984263-39984838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 562
               

               Conread position:
               1-594
               

               Cow position:
               chr13:56292833-56292235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               376
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               17, 58
               

               Conread position:
               17-316
               

               Cow position:
               chr13:56292070-56291770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               216, 282
               

               Conread position:
               17-397
               

               Cow position:
               chr13:56292154-56291773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 186
               

               Conread position:
               17-478
               

               Cow position:
               chr13:24163119-24163579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               154, 176
               

               Conread position:
               17-484
               

               Cow position:
               chr13:22124973-22125440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               285
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               139, 133
               

               Conread position:
               17-484
               

               Cow position:
               chr13:24162699-24163166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               285
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               139, 133
               

               Conread position:
               17-597
               

               Cow position:
               chr13:56292401-56291821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 187
               

               Conread position:
               18-594
               

               Cow position:
               chr13:56333677-56334265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               364
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               18, 12
               

               Conread position:
               19-464
               

               Cow position:
               chr13:39984450-39984895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               345, 332
               

               Conread position:
               19-594
               

               Cow position:
               chr13:39984114-39984692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 77
               

               Conread position:
               21-505
               

               Cow position:
               chr13:22124725-22125209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               86, 98
               

               Conread position:
               21-525
               

               Cow position:
               chr13:56333512-56334015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               135, 131
               

               Conread position:
               24-505
               

               Cow position:
               chr13:22125148-22125629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               290
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               83, 96
               

               Conread position:
               32-493
               

               Cow position:
               chr13:22124904-22125365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               277
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               142, 157
               

               Conread position:
               32-493
               

               Cow position:
               chr13:24162630-24163091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               142, 157
               

               Conread position:
               34-505
               

               Cow position:
               chr13:24162464-24162935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               76, 62
               

               Conread position:
               35-251
               

               Cow position:
               chr13:39930962-39931176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               79, 73
               

               Conread position:
               35-468
               

               Cow position:
               chr13:56333610-56334043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               156, 169
               

               Conread position:
               35-485
               

               Cow position:
               chr13:22125243-22125693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               276
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               148, 160
               

               Conread position:
               35-493
               

               Cow position:
               chr13:22124823-22125281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               279, 285
               

               Conread position:
               35-493
               

               Cow position:
               chr13:24162549-24163007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               282
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               79, 72
               

               Conread position:
               35-502
               

               Cow position:
               chr13:39930710-39931175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 72
               

               Conread position:
               35-505
               

               Cow position:
               chr13:24162885-24163355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               71, 84
               

               Conread position:
               35-553
               

               Cow position:
               chr13:24162969-24163486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               220, 226
               

               Conread position:
               36-569
               

               Cow position:
               chr13:39930627-39931160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               538
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 71
               

               Conread position:
               39-384
               

               Cow position:
               chr13:39984554-39984899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               47-526
               

               Cow position:
               chr13:56333874-56334359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               309
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               63, 67
               

               Conread position:
               69-481
               

               Cow position:
               chr13:56292183-56291773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 16
               

               Conread position:
               127-512
               

               Cow position:
               chr13:56292875-56292494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               247
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               22, 100
               

               Conread position:
               162-561
               

               Cow position:
               chr13:39930585-39930987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               345, 0
               

               Conread position:
               202-515
               

               Cow position:
               chr13:56317929-56318242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               56, 72
               

               Conread position:
               245-561
               

               Cow position:
               chr13:39930584-39930903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               262, 0
               

               Conread position:
               1-561
               

               Cow position:
               chr14:25860054-25860618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               352
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               19, 118
               

               Conread position:
               1-596
               

               Cow position:
               chr14:25859718-25860318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               3-515
               

               Cow position:
               chr14:25784217-25784729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               317
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               105, 116
               

               Conread position:
               3-636
               

               Cow position:
               chr14:25859216-25859857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 118
               

               Conread position:
               4-596
               

               Cow position:
               chr14:25876269-25876865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               365
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               7-470
               

               Cow position:
               chr14:3156019-3156482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 91
               

               Conread position:
               7-507
               

               Cow position:
               chr14:25894983-25895483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               305
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               112, 94
               

               Conread position:
               7-512
               

               Cow position:
               chr14:25783717-25784222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 264
               

               Conread position:
               7-516
               

               Cow position:
               chr14:25794809-25794299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               321
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               57, 65
               

               Conread position:
               7-568
               

               Cow position:
               chr14:25794725-25794160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 55
               

               Conread position:
               7-635
               

               Cow position:
               chr14:25836504-25837139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               383
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               510, 555
               

               Conread position:
               7-636
               

               Cow position:
               chr14:25876944-25877580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 197
               

               Conread position:
               14-502
               

               Cow position:
               chr14:447718-448205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               205, 10
               

               Conread position:
               14-512
               

               Cow position:
               chr14:3100876-3100379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               303
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               58, 11
               

               Conread position:
               18-488
               

               Cow position:
               chr14:447553-448023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 175
               

               Conread position:
               18-494
               

               Cow position:
               chr14:25794630-25794155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               300
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               297, 346
               

               Conread position:
               18-512
               

               Cow position:
               chr14:25795218-25794724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               430, 437
               

               Conread position:
               19-508
               

               Cow position:
               chr14:25836684-25837173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 182
               

               Conread position:
               19-512
               

               Cow position:
               chr14:25895667-25896160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               258, 269
               

               Conread position:
               19-515
               

               Cow position:
               chr14:25784149-25784645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 91
               

               Conread position:
               19-530
               

               Cow position:
               chr14:25895499-25896008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               316
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               98, 93
               

               Conread position:
               19-561
               

               Cow position:
               chr14:25877124-25877669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               550
               

               Alignm identity:
               336
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               89, 99
               

               Conread position:
               20-387
               

               Cow position:
               chr14:3156116-3156483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               101, 87
               

               Conread position:
               20-396
               

               Cow position:
               chr14:3155459-3155835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-463
               

               Cow position:
               chr14:25836769-25837212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               284
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               47, 51
               

               Conread position:
               20-507
               

               Cow position:
               chr14:25783394-25783880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 90
               

               Conread position:
               20-508
               

               Cow position:
               chr14:680693-681181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 100
               

               Conread position:
               20-512
               

               Cow position:
               chr14:3080544-3080052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-512
               

               Cow position:
               chr14:3127888-3127396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-512
               

               Cow position:
               chr14:25910799-25911289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 22
               

               Conread position:
               20-530
               

               Cow position:
               chr14:25836265-25836771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 76
               

               Conread position:
               20-596
               

               Cow position:
               chr14:25876789-25877369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 13
               

               Conread position:
               20-635
               

               Cow position:
               chr14:25783562-25784184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               517, 484
               

               Conread position:
               20-636
               

               Cow position:
               chr14:25836097-25836720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 52
               

               Conread position:
               21-493
               

               Cow position:
               chr14:25860243-25860715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 64
               

               Conread position:
               21-572
               

               Cow position:
               chr14:25877294-25877847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 64
               

               Conread position:
               24-432
               

               Cow position:
               chr14:3080120-3079712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               262
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               95, 84
               

               Conread position:
               24-486
               

               Cow position:
               chr14:25895168-25895630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               274
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               257, 274
               

               Conread position:
               24-507
               

               Cow position:
               chr14:3127968-3127485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 96
               

               Conread position:
               24-512
               

               Cow position:
               chr14:3080456-3079968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 104
               

               Conread position:
               24-512
               

               Cow position:
               chr14:3128136-3127648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 96
               

               Conread position:
               24-562
               

               Cow position:
               chr14:25895756-25896297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               330
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               157, 177
               

               Conread position:
               24-595
               

               Cow position:
               chr14:25784070-25784645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 95
               

               Conread position:
               25-512
               

               Cow position:
               chr14:3080791-3080304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               301
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               26-508
               

               Cow position:
               chr14:25795462-25794981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               301
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               77, 69
               

               Conread position:
               26-512
               

               Cow position:
               chr14:25783316-25783802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 168
               

               Conread position:
               26-515
               

               Cow position:
               chr14:25876375-25876864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 44
               

               Conread position:
               26-516
               

               Cow position:
               chr14:25783484-25783974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 69
               

               Conread position:
               26-573
               

               Cow position:
               chr14:25794874-25794324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 33
               

               Conread position:
               26-614
               

               Cow position:
               chr14:25859492-25860087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 84
               

               Conread position:
               26-614
               

               Cow position:
               chr14:25876543-25877138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 88
               

               Conread position:
               26-635
               

               Cow position:
               chr14:25783904-25784520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 93
               

               Conread position:
               28-429
               

               Cow position:
               chr14:447815-448216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               253
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               38, 32
               

               Conread position:
               32-346
               

               Cow position:
               chr14:25877557-25877871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               57, 63
               

               Conread position:
               34-309
               

               Cow position:
               chr14:25836951-25837226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               34-492
               

               Cow position:
               chr14:25894845-25895300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               132, 73
               

               Conread position:
               34-508
               

               Cow position:
               chr14:3128042-3127568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 145
               

               Conread position:
               35-346
               

               Cow position:
               chr14:447906-448217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               35-393
               

               Cow position:
               chr14:25836868-25837226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-395
               

               Cow position:
               chr14:3127621-3127260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               243, 235
               

               Conread position:
               35-400
               

               Cow position:
               chr14:3080025-3079659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               361, 0
               

               Conread position:
               35-420
               

               Cow position:
               chr14:3061676-3061291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               75, 85
               

               Conread position:
               35-429
               

               Cow position:
               chr14:433875-434269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               322, 313
               

               Conread position:
               35-429
               

               Cow position:
               chr14:433959-434353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               229, 234
               

               Conread position:
               35-429
               

               Cow position:
               chr14:3127705-3127311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               250
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               35-432
               

               Cow position:
               chr14:3127789-3127392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               264
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               75, 85
               

               Conread position:
               35-434
               

               Cow position:
               chr14:25910896-25911295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               86, 75
               

               Conread position:
               35-486
               

               Cow position:
               chr14:3080361-3079910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               284
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               169, 163
               

               Conread position:
               35-492
               

               Cow position:
               chr14:447654-448111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               290
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               158, 169
               

               Conread position:
               35-492
               

               Cow position:
               chr14:3080697-3080240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 85
               

               Conread position:
               35-492
               

               Cow position:
               chr14:25895935-25896392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               382, 377
               

               Conread position:
               35-496
               

               Cow position:
               chr14:3101438-3100981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               32, 37
               

               Conread position:
               35-508
               

               Cow position:
               chr14:680792-681265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 151
               

               Conread position:
               35-508
               

               Cow position:
               chr14:25836364-25836837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 75
               

               Conread position:
               35-508
               

               Cow position:
               chr14:25895599-25896072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               329, 335
               

               Conread position:
               35-512
               

               Cow position:
               chr14:3061592-3061115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               85, 60
               

               Conread position:
               35-512
               

               Cow position:
               chr14:3080193-3079716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               296
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               169, 165
               

               Conread position:
               35-512
               

               Cow position:
               chr14:3080613-3080136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 121
               

               Conread position:
               35-512
               

               Cow position:
               chr14:3080865-3080388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 27
               

               Conread position:
               35-512
               

               Cow position:
               chr14:3101187-3100715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 126
               

               Conread position:
               35-513
               

               Cow position:
               chr14:25860341-25860815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               307
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               163, 168
               

               Conread position:
               35-525
               

               Cow position:
               chr14:3100938-3100449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               77, 69
               

               Conread position:
               35-543
               

               Cow position:
               chr14:25877392-25877901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               321
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               163, 168
               

               Conread position:
               35-573
               

               Cow position:
               chr14:25876636-25877176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 76
               

               Conread position:
               35-596
               

               Cow position:
               chr14:25795033-25794468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 84
               

               Conread position:
               35-636
               

               Cow position:
               chr14:25859921-25860529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               382
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               67, 61
               

               Conread position:
               41-507
               

               Cow position:
               chr14:680376-680844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               286
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               23, 230
               

               Conread position:
               43-594
               

               Cow position:
               chr14:25859173-25859727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               44-512
               

               Cow position:
               chr14:3155972-3156440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 69
               

               Conread position:
               45-449
               

               Cow position:
               chr14:680214-680618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               128, 134
               

               Conread position:
               47-432
               

               Cow position:
               chr14:3061328-3060943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               73, 60
               

               Conread position:
               47-437
               

               Cow position:
               chr14:3100676-3100278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               157, 136
               

               Conread position:
               47-507
               

               Cow position:
               chr14:25895443-25895903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               281
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               71, 61
               

               Conread position:
               47-515
               

               Cow position:
               chr14:680636-681104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               310, 302
               

               Conread position:
               49-486
               

               Cow position:
               chr14:25894941-25895378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               57, 46
               

               Conread position:
               53-432
               

               Cow position:
               chr14:3155408-3155787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               56-512
               

               Cow position:
               chr14:3155900-3156356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 40
               

               Conread position:
               118-573
               

               Cow position:
               chr14:25783324-25783781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 80
               

               Conread position:
               119-515
               

               Cow position:
               chr14:25795453-25795057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               163, 147
               

               Conread position:
               123-493
               

               Cow position:
               chr14:3061672-3061302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               326, 332
               

               Conread position:
               123-512
               

               Cow position:
               chr14:447574-447963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               258
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               67, 80
               

               Conread position:
               131-396
               

               Cow position:
               chr14:420636-420901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               123, 138
               

               Conread position:
               131-492
               

               Cow position:
               chr14:433887-434248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               44, 53
               

               Conread position:
               131-579
               

               Cow position:
               chr14:25910824-25911274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               131-594
               

               Cow position:
               chr14:3128113-3127647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 55
               

               Conread position:
               133-635
               

               Cow position:
               chr14:25835790-25836299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               59, 67
               

               Conread position:
               137-429
               

               Cow position:
               chr14:3061742-3061450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               221, 210
               

               Conread position:
               137-492
               

               Cow position:
               chr14:680222-680577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               151, 145
               

               Conread position:
               138-512
               

               Cow position:
               chr14:3128191-3127816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               12, 151
               

               Conread position:
               162-512
               

               Cow position:
               chr14:3080990-3080640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               42, 38
               

               Conread position:
               162-588
               

               Cow position:
               chr14:25835987-25836416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               276
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               11, 17
               

               Conread position:
               201-515
               

               Cow position:
               chr14:3155877-3156191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               201-635
               

               Cow position:
               chr14:25783323-25783764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               336, 313
               

               Conread position:
               202-530
               

               Cow position:
               chr14:3155389-3155715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               155, 145
               

               Conread position:
               203-512
               

               Cow position:
               chr14:447570-447879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               244, 253
               

               Conread position:
               203-512
               

               Cow position:
               chr14:3101438-3101130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               52, 84
               

               Conread position:
               203-536
               

               Cow position:
               chr14:25795453-25795122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               68, 60
               

               Conread position:
               215-480
               

               Cow position:
               chr14:420636-420901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               142, 132
               

               Conread position:
               266-507
               

               Cow position:
               chr14:3155858-3156099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               278-515
               

               Cow position:
               chr14:25783316-25783553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               147, 168
               

               Conread position:
               1-411
               

               Cow position:
               chr16:14627135-14626725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               19, 269
               

               Conread position:
               1-573
               

               Cow position:
               chr16:14627723-14627148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 96
               

               Conread position:
               2-635
               

               Cow position:
               chr16:14627890-14627249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 112
               

               Conread position:
               19-508
               

               Cow position:
               chr16:14627284-14626795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 94
               

               Conread position:
               19-594
               

               Cow position:
               chr16:14627452-14626874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               497, 553
               

               Conread position:
               21-594
               

               Cow position:
               chr16:14627366-14626791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 92
               

               Conread position:
               21-636
               

               Cow position:
               chr16:14627534-14626912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 93
               

               Conread position:
               26-495
               

               Cow position:
               chr16:14627193-14626725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 94
               

               Conread position:
               31-573
               

               Cow position:
               chr16:14627944-14627400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 236
               

               Conread position:
               1-481
               

               Cow position:
               chr17:22589652-22589173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 286
               

               Conread position:
               1-506
               

               Cow position:
               chr17:22452183-22451677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1-562
               

               Cow position:
               chr17:22499281-22498716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 263
               

               Conread position:
               1-562
               

               Cow position:
               chr17:22589820-22589255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 72
               

               Conread position:
               1-567
               

               Cow position:
               chr17:22552318-22551748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 422
               

               Conread position:
               1-568
               

               Cow position:
               chr17:22452268-22451696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 269
               

               Conread position:
               1-573
               

               Cow position:
               chr17:22552066-22551491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 120
               

               Conread position:
               1-573
               

               Cow position:
               chr17:22590072-22589497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 193
               

               Conread position:
               1-594
               

               Cow position:
               chr17:22589904-22589307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 95
               

               Conread position:
               1-594
               

               Cow position:
               chr17:22590240-22589643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 152
               

               Conread position:
               1-635
               

               Cow position:
               chr17:22552906-22552264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               644
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 572
               

               Conread position:
               1-636
               

               Cow position:
               chr17:22552234-22551591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 562
               

               Conread position:
               3-418
               

               Cow position:
               chr17:22551896-22551480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 115
               

               Conread position:
               3-430
               

               Cow position:
               chr17:22473534-22473963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 69
               

               Conread position:
               3-560
               

               Cow position:
               chr17:22589734-22589173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 70
               

               Conread position:
               3-636
               

               Cow position:
               chr17:22473202-22473839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               354, 60
               

               Conread position:
               7-562
               

               Cow position:
               chr17:22552731-22552173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               559
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               505, 0
               

               Conread position:
               12-636
               

               Cow position:
               chr17:22589975-22589345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 9
               

               Conread position:
               13-636
               

               Cow position:
               chr17:22590311-22589681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 57
               

               Conread position:
               14-594
               

               Cow position:
               chr17:22553059-22552477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               499, 7
               

               Conread position:
               14-636
               

               Cow position:
               chr17:22473294-22473923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 189
               

               Conread position:
               14-636
               

               Cow position:
               chr17:22552555-22551927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 7
               

               Conread position:
               14-636
               

               Cow position:
               chr17:22552640-22552011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               634
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 70
               

               Conread position:
               17-502
               

               Cow position:
               chr17:22551965-22551480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 97
               

               Conread position:
               17-589
               

               Cow position:
               chr17:22553141-22552567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 45
               

               Conread position:
               19-632
               

               Cow position:
               chr17:22499178-22498558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               376
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               241, 268
               

               Conread position:
               20-410
               

               Cow position:
               chr17:22498841-22498460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               52, 39
               

               Conread position:
               20-494
               

               Cow position:
               chr17:22499093-22498619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               302
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               85, 75
               

               Conread position:
               24-512
               

               Cow position:
               chr17:22452327-22451839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 89
               

               Conread position:
               26-636
               

               Cow position:
               chr17:22552460-22551843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 36
               

               Conread position:
               34-491
               

               Cow position:
               chr17:22498995-22498538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               286
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               323, 313
               

               Conread position:
               35-594
               

               Cow position:
               chr17:22452400-22451838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               35-636
               

               Cow position:
               chr17:22499330-22498722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 312
               

               Conread position:
               41-571
               

               Cow position:
               chr17:22473405-22473938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 223
               

               Conread position:
               80-636
               

               Cow position:
               chr17:22553162-22552599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               437, 460
               

               Conread position:
               117-508
               

               Cow position:
               chr17:22499332-22498942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               387, 0
               

               Conread position:
               118-509
               

               Cow position:
               chr17:22452401-22452011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               251
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               386, 0
               

               Conread position:
               139-573
               

               Cow position:
               chr17:22499394-22498958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               381, 423
               

               Conread position:
               150-635
               

               Cow position:
               chr17:22473262-22473754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 111
               

               Conread position:
               193-507
               

               Cow position:
               chr17:22452410-22452096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 76
               

               Conread position:
               243-573
               

               Cow position:
               chr17:22553167-22552835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               270, 319
               

               Conread position:
               277-508
               

               Cow position:
               chr17:22452410-22452179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               160, 145
               

               Conread position:
               1-300
               

               Cow position:
               chr18:22634923-22635223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               12, 52
               

               Conread position:
               1-303
               

               Cow position:
               chr18:42744098-42743795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               1-405
               

               Cow position:
               chr18:42792507-42792912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               1-405
               

               Cow position:
               chr18:55018499-55018903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               12, 120
               

               Conread position:
               1-430
               

               Cow position:
               chr18:52447979-52448410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               1-432
               

               Cow position:
               chr18:40306872-40307304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               35, 95
               

               Conread position:
               1-432
               

               Cow position:
               chr18:55008842-55009274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               275
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               14, 95
               

               Conread position:
               1-449
               

               Cow position:
               chr18:51812349-51811900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               1-464
               

               Cow position:
               chr18:42984941-42984477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               300
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               24, 95
               

               Conread position:
               1-482
               

               Cow position:
               chr18:41198278-41198760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               1-486
               

               Cow position:
               chr18:14453989-14453503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 112
               

               Conread position:
               1-486
               

               Cow position:
               chr18:56316416-56316902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               298
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               20, 270
               

               Conread position:
               1-489
               

               Cow position:
               chr18:33092907-33092418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 96
               

               Conread position:
               1-490
               

               Cow position:
               chr18:33064067-33063576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               7, 29
               

               Conread position:
               1-491
               

               Cow position:
               chr18:43168074-43168564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 72
               

               Conread position:
               1-506
               

               Cow position:
               chr18:33064990-33064485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 48
               

               Conread position:
               1-506
               

               Cow position:
               chr18:51789106-51788602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 270
               

               Conread position:
               1-507
               

               Cow position:
               chr18:44240124-44240631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 72
               

               Conread position:
               1-507
               

               Cow position:
               chr18:56248044-56247527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               325
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               19, 147
               

               Conread position:
               1-508
               

               Cow position:
               chr18:44254024-44253520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 74
               

               Conread position:
               1-508
               

               Cow position:
               chr18:56434160-56434668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               326
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               1-509
               

               Cow position:
               chr18:56433747-56434248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               324
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               15, 59
               

               Conread position:
               1-512
               

               Cow position:
               chr18:53560209-53560721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               324
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               7, 28
               

               Conread position:
               1-512
               

               Cow position:
               chr18:53636097-53635585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               315
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               13, 26
               

               Conread position:
               1-512
               

               Cow position:
               chr18:56128068-56128580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               308
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               12, 28
               

               Conread position:
               1-514
               

               Cow position:
               chr18:22634671-22635185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               325
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               17, 55
               

               Conread position:
               1-515
               

               Cow position:
               chr18:41949066-41948550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 189
               

               Conread position:
               1-515
               

               Cow position:
               chr18:43093387-43092872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 182
               

               Conread position:
               1-515
               

               Cow position:
               chr18:44253285-44252781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               325
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               15, 98
               

               Conread position:
               1-515
               

               Cow position:
               chr18:50848534-50849049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 118
               

               Conread position:
               1-515
               

               Cow position:
               chr18:55018247-55018763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 46
               

               Conread position:
               1-518
               

               Cow position:
               chr18:42960268-42959749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 101
               

               Conread position:
               1-520
               

               Cow position:
               chr18:53525723-53526243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               323
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               15, 6
               

               Conread position:
               1-536
               

               Cow position:
               chr18:42985026-42984491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 96
               

               Conread position:
               1-562
               

               Cow position:
               chr18:42791919-42792484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 96
               

               Conread position:
               1-562
               

               Cow position:
               chr18:43167823-43168388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 189
               

               Conread position:
               1-565
               

               Cow position:
               chr18:50281789-50282357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 194
               

               Conread position:
               1-569
               

               Cow position:
               chr18:50848786-50849357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 143
               

               Conread position:
               1-572
               

               Cow position:
               chr18:50848870-50849444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 320
               

               Conread position:
               1-573
               

               Cow position:
               chr18:40086737-40086162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 55
               

               Conread position:
               1-573
               

               Cow position:
               chr18:42791247-42791822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 71
               

               Conread position:
               1-573
               

               Cow position:
               chr18:42837821-42837246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 199
               

               Conread position:
               1-573
               

               Cow position:
               chr18:52427664-52428239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               579
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 263
               

               Conread position:
               1-589
               

               Cow position:
               chr18:40306536-40307127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               373
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               1-594
               

               Cow position:
               chr18:43167739-43168336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 72
               

               Conread position:
               1-594
               

               Cow position:
               chr18:50059424-50058827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 562
               

               Conread position:
               1-594
               

               Cow position:
               chr18:50281705-50282302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 186
               

               Conread position:
               1-594
               

               Cow position:
               chr18:53509353-53509950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               362
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               6, 85
               

               Conread position:
               1-594
               

               Cow position:
               chr18:53587137-53586539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               369
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               15, 40
               

               Conread position:
               1-594
               

               Cow position:
               chr18:54967903-54968498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 85
               

               Conread position:
               1-594
               

               Cow position:
               chr18:54979591-54980188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 562
               

               Conread position:
               1-594
               

               Cow position:
               chr18:54980095-54980691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               1-594
               

               Cow position:
               chr18:54992851-54993448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 120
               

               Conread position:
               1-594
               

               Cow position:
               chr18:54992935-54993532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 104
               

               Conread position:
               1-594
               

               Cow position:
               chr18:55018163-55018761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               1-594
               

               Cow position:
               chr18:56433918-56434505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               377
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               12, 28
               

               Conread position:
               1-596
               

               Cow position:
               chr18:53559873-53560473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 196
               

               Conread position:
               1-597
               

               Cow position:
               chr18:53525891-53526490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 107
               

               Conread position:
               1-598
               

               Cow position:
               chr18:56434328-56434929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 36
               

               Conread position:
               1-600
               

               Cow position:
               chr18:53525807-53526411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               375
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               15, 89
               

               Conread position:
               1-601
               

               Cow position:
               chr18:52433013-52433618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 347
               

               Conread position:
               1-606
               

               Cow position:
               chr18:54979927-54980536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               374
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               12, 89
               

               Conread position:
               1-610
               

               Cow position:
               chr18:50271492-50272104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 113
               

               Conread position:
               1-631
               

               Cow position:
               chr18:44240208-44240846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 95
               

               Conread position:
               1-632
               

               Cow position:
               chr18:40324853-40324214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               641
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 542
               

               Conread position:
               1-635
               

               Cow position:
               chr18:44184687-44184045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 183
               

               Conread position:
               1-635
               

               Cow position:
               chr18:44239788-44240430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 152
               

               Conread position:
               1-636
               

               Cow position:
               chr18:42791079-42791722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 117
               

               Conread position:
               1-636
               

               Cow position:
               chr18:42791582-42792226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 96
               

               Conread position:
               1-636
               

               Cow position:
               chr18:43120292-43119649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 101
               

               Conread position:
               1-636
               

               Cow position:
               chr18:50030951-50030311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               650
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 14
               

               Conread position:
               1-636
               

               Cow position:
               chr18:50059592-50058949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 199
               

               Conread position:
               2-610
               

               Cow position:
               chr18:50058835-50058235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 109
               

               Conread position:
               3-233
               

               Cow position:
               chr18:1418371-1418602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               15, 57
               

               Conread position:
               3-315
               

               Cow position:
               chr18:1418288-1418600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               8, 19
               

               Conread position:
               3-368
               

               Cow position:
               chr18:51812262-51811897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               90, 82
               

               Conread position:
               3-411
               

               Cow position:
               chr18:51839191-51838783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               96, 86
               

               Conread position:
               3-482
               

               Cow position:
               chr18:50048770-50048295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 116
               

               Conread position:
               3-496
               

               Cow position:
               chr18:40324346-40323858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 98
               

               Conread position:
               3-509
               

               Cow position:
               chr18:50295390-50295894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               480, 0
               

               Conread position:
               3-512
               

               Cow position:
               chr18:50295222-50295731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 264
               

               Conread position:
               3-512
               

               Cow position:
               chr18:51789187-51788679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               309
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               253, 260
               

               Conread position:
               3-515
               

               Cow position:
               chr18:53560295-53560804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               328
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               18, 95
               

               Conread position:
               3-516
               

               Cow position:
               chr18:55008676-55009190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 69
               

               Conread position:
               3-538
               

               Cow position:
               chr18:43093301-43092764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 83
               

               Conread position:
               3-556
               

               Cow position:
               chr18:50083484-50084040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 95
               

               Conread position:
               3-558
               

               Cow position:
               chr18:1418036-1418594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 188
               

               Conread position:
               3-560
               

               Cow position:
               chr18:41197608-41198171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               3-561
               

               Cow position:
               chr18:40075141-40075702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               346
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               69, 56
               

               Conread position:
               3-571
               

               Cow position:
               chr18:51789607-51789037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 191
               

               Conread position:
               3-573
               

               Cow position:
               chr18:51789775-51789203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               506, 537
               

               Conread position:
               3-573
               

               Cow position:
               chr18:51813018-51812446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 22
               

               Conread position:
               3-573
               

               Cow position:
               chr18:52433184-52433756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               3-594
               

               Cow position:
               chr18:51874096-51874684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               374
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               11, 61
               

               Conread position:
               3-597
               

               Cow position:
               chr18:53498345-53498941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               377
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               14, 29
               

               Conread position:
               3-597
               

               Cow position:
               chr18:55017997-55018595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 23
               

               Conread position:
               3-600
               

               Cow position:
               chr18:53509440-53510040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               368
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               74, 104
               

               Conread position:
               3-635
               

               Cow position:
               chr18:41197692-41198332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               643
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 193
               

               Conread position:
               3-635
               

               Cow position:
               chr18:51812934-51812295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               642
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               447, 453
               

               Conread position:
               3-636
               

               Cow position:
               chr18:42675204-42674563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 197
               

               Conread position:
               3-636
               

               Cow position:
               chr18:42675620-42674983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               645
               

               Alignm identity:
               394
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               121, 86
               

               Conread position:
               3-636
               

               Cow position:
               chr18:51400313-51400954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 259
               

               Conread position:
               3-636
               

               Cow position:
               chr18:51812766-51812126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               644
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 285
               

               Conread position:
               4-636
               

               Cow position:
               chr18:50022539-50021894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 116
               

               Conread position:
               5-433
               

               Cow position:
               chr18:51765962-51765534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 261
               

               Conread position:
               5-508
               

               Cow position:
               chr18:42791000-42791502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 173
               

               Conread position:
               5-588
               

               Cow position:
               chr18:44154504-44153914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 274
               

               Conread position:
               6-431
               

               Cow position:
               chr18:51874261-51874686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               267
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               248, 258
               

               Conread position:
               6-433
               

               Cow position:
               chr18:43119950-43119523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 104
               

               Conread position:
               6-481
               

               Cow position:
               chr18:51752214-51751739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 109
               

               Conread position:
               6-571
               

               Cow position:
               chr18:51368397-51367830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               571
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 89
               

               Conread position:
               6-574
               

               Cow position:
               chr18:51752130-51751559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 281
               

               Conread position:
               6-594
               

               Cow position:
               chr18:42744680-42744089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 83
               

               Conread position:
               6-594
               

               Cow position:
               chr18:55008765-55009353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               382
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               25, 8
               

               Conread position:
               7-261
               

               Cow position:
               chr18:42959682-42959428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-380
               

               Cow position:
               chr18:43022361-43021988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               98, 88
               

               Conread position:
               7-396
               

               Cow position:
               chr18:43048606-43048221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               316, 286
               

               Conread position:
               7-432
               

               Cow position:
               chr18:42827526-42827956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               398, 0
               

               Conread position:
               7-433
               

               Cow position:
               chr18:51969629-51970046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               84, 95
               

               Conread position:
               7-480
               

               Cow position:
               chr18:42837562-42837091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 88
               

               Conread position:
               7-480
               

               Cow position:
               chr18:50021858-50021381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               7-486
               

               Cow position:
               chr18:42694010-42693531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 79
               

               Conread position:
               7-494
               

               Cow position:
               chr18:42693422-42692937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               318
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               81, 90
               

               Conread position:
               7-508
               

               Cow position:
               chr18:42744343-42743843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               497, 0
               

               Conread position:
               7-508
               

               Cow position:
               chr18:56247607-56247116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 23
               

               Conread position:
               7-509
               

               Cow position:
               chr18:52428511-52429013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 193
               

               Conread position:
               7-510
               

               Cow position:
               chr18:50048849-50048346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 111
               

               Conread position:
               7-512
               

               Cow position:
               chr18:50295310-50295815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               314
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               174, 191
               

               Conread position:
               7-512
               

               Cow position:
               chr18:52433692-52434197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 193
               

               Conread position:
               7-515
               

               Cow position:
               chr18:42693926-42693418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 181
               

               Conread position:
               7-515
               

               Cow position:
               chr18:44184848-44184340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-517
               

               Cow position:
               chr18:51969547-51970045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               319
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               351, 55
               

               Conread position:
               7-524
               

               Cow position:
               chr18:33092984-33092468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 64
               

               Conread position:
               7-531
               

               Cow position:
               chr18:33064396-33063874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 113
               

               Conread position:
               7-569
               

               Cow position:
               chr18:50099601-50100165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 89
               

               Conread position:
               7-573
               

               Cow position:
               chr18:52428007-52428575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 106
               

               Conread position:
               7-573
               

               Cow position:
               chr18:52428259-52428827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 106
               

               Conread position:
               7-594
               

               Cow position:
               chr18:50058997-50058409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 90
               

               Conread position:
               7-635
               

               Cow position:
               chr18:42837898-42837263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 65
               

               Conread position:
               7-636
               

               Cow position:
               chr18:42792094-42792730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 182
               

               Conread position:
               7-636
               

               Cow position:
               chr18:51969379-51970004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               640
               

               Alignm identity:
               394
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               331, 235
               

               Conread position:
               8-512
               

               Cow position:
               chr18:51368311-51367808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 87
               

               Conread position:
               8-562
               

               Cow position:
               chr18:50271584-50272141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               8-571
               

               Cow position:
               chr18:51839439-51838873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               568
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 555
               

               Conread position:
               8-594
               

               Cow position:
               chr18:42837729-42837140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               514, 554
               

               Conread position:
               8-635
               

               Cow position:
               chr18:41197950-41198584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               638
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 271
               

               Conread position:
               8-635
               

               Cow position:
               chr18:41198118-41198752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               638
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 88
               

               Conread position:
               9-636
               

               Cow position:
               chr18:52447232-52447866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 104
               

               Conread position:
               11-483
               

               Cow position:
               chr18:50271672-50272143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 10
               

               Conread position:
               11-502
               

               Cow position:
               chr18:50083913-50084405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               305
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               371, 13
               

               Conread position:
               11-635
               

               Cow position:
               chr18:50059076-50058448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 10
               

               Conread position:
               13-502
               

               Cow position:
               chr18:51789261-51788772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               303
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               245, 253
               

               Conread position:
               13-573
               

               Cow position:
               chr18:42790840-42791402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 106
               

               Conread position:
               13-636
               

               Cow position:
               chr18:53559802-53560432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               636
               

               Alignm identity:
               388
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               93, 107
               

               Conread position:
               14-510
               

               Cow position:
               chr18:56316179-56316674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 10
               

               Conread position:
               14-571
               

               Cow position:
               chr18:42792270-42792828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               500, 13
               

               Conread position:
               14-594
               

               Cow position:
               chr18:50048926-50048343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 11
               

               Conread position:
               15-501
               

               Cow position:
               chr18:56316347-56316833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 80
               

               Conread position:
               15-561
               

               Cow position:
               chr18:56316095-56316644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 99
               

               Conread position:
               15-593
               

               Cow position:
               chr18:56433514-56434093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               350
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               53, 44
               

               Conread position:
               15-594
               

               Cow position:
               chr18:41949134-41948552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 85
               

               Conread position:
               16-507
               

               Cow position:
               chr18:51367718-51367225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               11, 58
               

               Conread position:
               16-528
               

               Cow position:
               chr18:50021933-50021415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 174
               

               Conread position:
               16-596
               

               Cow position:
               chr18:43167923-43168507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 251
               

               Conread position:
               17-401
               

               Cow position:
               chr18:44397887-44397503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               263, 254
               

               Conread position:
               17-429
               

               Cow position:
               chr18:40306721-40307133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               82, 78
               

               Conread position:
               17-484
               

               Cow position:
               chr18:56316601-56317068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               17-494
               

               Cow position:
               chr18:49032578-49032101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 107
               

               Conread position:
               17-495
               

               Cow position:
               chr18:42693664-42693187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               304
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               166, 173
               

               Conread position:
               17-495
               

               Cow position:
               chr18:51839261-51838783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 270
               

               Conread position:
               17-507
               

               Cow position:
               chr18:56128253-56128742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               303
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               82, 78
               

               Conread position:
               17-511
               

               Cow position:
               chr18:53610167-53609674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               97, 91
               

               Conread position:
               17-516
               

               Cow position:
               chr18:42693832-42693333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 80
               

               Conread position:
               17-527
               

               Cow position:
               chr18:50848971-50849484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 78
               

               Conread position:
               17-558
               

               Cow position:
               chr18:50022016-50021469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 187
               

               Conread position:
               17-561
               

               Cow position:
               chr18:42792188-42792735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 45
               

               Conread position:
               17-562
               

               Cow position:
               chr18:1417966-1418514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               17-571
               

               Cow position:
               chr18:56128505-56129061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 106
               

               Conread position:
               17-573
               

               Cow position:
               chr18:44398223-44397665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 175
               

               Conread position:
               17-573
               

               Cow position:
               chr18:51765866-51765308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               340
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               237, 271
               

               Conread position:
               17-573
               

               Cow position:
               chr18:52427512-52428071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               339
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               11, 331
               

               Conread position:
               17-573
               

               Cow position:
               chr18:52432861-52433420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               337
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               11, 331
               

               Conread position:
               17-585
               

               Cow position:
               chr18:42792356-42792929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               484, 478
               

               Conread position:
               17-594
               

               Cow position:
               chr18:43093622-43093042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 68
               

               Conread position:
               17-594
               

               Cow position:
               chr18:49032914-49032334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 103
               

               Conread position:
               17-594
               

               Cow position:
               chr18:50059239-50058659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 101
               

               Conread position:
               17-596
               

               Cow position:
               chr18:52447408-52447991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 162
               

               Conread position:
               17-596
               

               Cow position:
               chr18:53635912-53635329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               586
               

               Alignm identity:
               351
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               270, 266
               

               Conread position:
               17-630
               

               Cow position:
               chr18:51874027-51874640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               379
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               86, 78
               

               Conread position:
               17-635
               

               Cow position:
               chr18:51789509-51788884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 80
               

               Conread position:
               17-636
               

               Cow position:
               chr18:50059659-50059033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 179
               

               Conread position:
               17-636
               

               Cow position:
               chr18:52446988-52447614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               18-409
               

               Cow position:
               chr18:43174887-43174496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               231, 226
               

               Conread position:
               18-442
               

               Cow position:
               chr18:42959830-42959415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               18-442
               

               Cow position:
               chr18:44253758-44253335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               271
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               368, 0
               

               Conread position:
               18-448
               

               Cow position:
               chr18:41948711-41948283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               186, 182
               

               Conread position:
               18-515
               

               Cow position:
               chr18:41948879-41948382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 82
               

               Conread position:
               18-527
               

               Cow position:
               chr18:49033333-49032826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               496, 0
               

               Conread position:
               18-532
               

               Cow position:
               chr18:51368554-51368043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 325
               

               Conread position:
               18-573
               

               Cow position:
               chr18:41949383-41948826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 180
               

               Conread position:
               18-629
               

               Cow position:
               chr18:43120190-43119572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 77
               

               Conread position:
               18-635
               

               Cow position:
               chr18:43022686-43022062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 54
               

               Conread position:
               19-398
               

               Cow position:
               chr18:44184332-44183953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               90, 76
               

               Conread position:
               19-493
               

               Cow position:
               chr18:51400582-51401056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 175
               

               Conread position:
               19-509
               

               Cow position:
               chr18:42693746-42693256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 79
               

               Conread position:
               19-512
               

               Cow position:
               chr18:33093056-33092563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               257, 248
               

               Conread position:
               19-512
               

               Cow position:
               chr18:49033080-49032587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 252
               

               Conread position:
               19-512
               

               Cow position:
               chr18:56329717-56329224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 101
               

               Conread position:
               19-515
               

               Cow position:
               chr18:44253841-44253346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               454, 0
               

               Conread position:
               19-515
               

               Cow position:
               chr18:52433368-52433864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 184
               

               Conread position:
               19-521
               

               Cow position:
               chr18:51367797-51367295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               309
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               75, 94
               

               Conread position:
               19-573
               

               Cow position:
               chr18:51400498-51401054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 167
               

               Conread position:
               19-573
               

               Cow position:
               chr18:52427935-52428491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               562
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 5
               

               Conread position:
               19-573
               

               Cow position:
               chr18:52428187-52428743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 184
               

               Conread position:
               19-589
               

               Cow position:
               chr18:52428439-52429011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 76
               

               Conread position:
               19-589
               

               Cow position:
               chr18:52433620-52434192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               577
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 181
               

               Conread position:
               19-597
               

               Cow position:
               chr18:40324582-40324000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 53
               

               Conread position:
               19-598
               

               Cow position:
               chr18:52427767-52428350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               588
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 146
               

               Conread position:
               19-635
               

               Cow position:
               chr18:40086380-40085767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               388
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               185, 174
               

               Conread position:
               19-635
               

               Cow position:
               chr18:43175222-43174599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               333, 328
               

               Conread position:
               19-635
               

               Cow position:
               chr18:44184920-44184297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               503, 533
               

               Conread position:
               19-636
               

               Cow position:
               chr18:52446833-52447446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               389
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               254, 70
               

               Conread position:
               20-295
               

               Cow position:
               chr18:49032323-49032048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               244, 253
               

               Conread position:
               20-303
               

               Cow position:
               chr18:49023033-49023316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               50, 42
               

               Conread position:
               20-315
               

               Cow position:
               chr18:56247350-56247059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               184, 163
               

               Conread position:
               20-334
               

               Cow position:
               chr18:51751780-51751470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               87, 75
               

               Conread position:
               20-464
               

               Cow position:
               chr18:56329296-56328852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 104
               

               Conread position:
               20-477
               

               Cow position:
               chr18:43048677-43048222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               292
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               392, 357
               

               Conread position:
               20-485
               

               Cow position:
               chr18:1418137-1418602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 169
               

               Conread position:
               20-493
               

               Cow position:
               chr18:43174969-43174496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 308
               

               Conread position:
               20-494
               

               Cow position:
               chr18:44154148-44153681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               304
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               99, 75
               

               Conread position:
               20-504
               

               Cow position:
               chr18:44184415-44183930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               306
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               252, 262
               

               Conread position:
               20-507
               

               Cow position:
               chr18:41948961-41948475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 51
               

               Conread position:
               20-507
               

               Cow position:
               chr18:51839342-51838855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 64
               

               Conread position:
               20-508
               

               Cow position:
               chr18:40306388-40306876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               305
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               154, 163
               

               Conread position:
               20-508
               

               Cow position:
               chr18:49033163-49032676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 154
               

               Conread position:
               20-510
               

               Cow position:
               chr18:44398052-44397562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 75
               

               Conread position:
               20-510
               

               Cow position:
               chr18:56316520-56317010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               294
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-511
               

               Cow position:
               chr18:56128676-56129166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 88
               

               Conread position:
               20-512
               

               Cow position:
               chr18:44253504-44253026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               244, 131
               

               Conread position:
               20-512
               

               Cow position:
               chr18:53635657-53635165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 103
               

               Conread position:
               20-512
               

               Cow position:
               chr18:56329464-56328972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-515
               

               Cow position:
               chr18:41948793-41948300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 253
               

               Conread position:
               20-515
               

               Cow position:
               chr18:42674850-42674359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 75
               

               Conread position:
               20-515
               

               Cow position:
               chr18:42792023-42792518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               20-515
               

               Cow position:
               chr18:42959912-42959426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               20-515
               

               Cow position:
               chr18:49032659-49032164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 180
               

               Conread position:
               20-539
               

               Cow position:
               chr18:51812413-51811893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 243
               

               Conread position:
               20-562
               

               Cow position:
               chr18:40324497-40323952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 180
               

               Conread position:
               20-573
               

               Cow position:
               chr18:42744498-42743943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               494, 538
               

               Conread position:
               20-573
               

               Cow position:
               chr18:51752369-51751813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               347
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               13, 41
               

               Conread position:
               20-589
               

               Cow position:
               chr18:42744414-42743843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 75
               

               Conread position:
               20-597
               

               Cow position:
               chr18:53635489-53634910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 88
               

               Conread position:
               20-606
               

               Cow position:
               chr18:54993291-54993880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 268
               

               Conread position:
               20-635
               

               Cow position:
               chr18:41949297-41948675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               497, 540
               

               Conread position:
               20-635
               

               Cow position:
               chr18:43175557-43174935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               421, 414
               

               Conread position:
               20-636
               

               Cow position:
               chr18:40324665-40324042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 145
               

               Conread position:
               20-636
               

               Cow position:
               chr18:44398388-44397765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 178
               

               Conread position:
               20-636
               

               Cow position:
               chr18:51368047-51367425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 99
               

               Conread position:
               20-636
               

               Cow position:
               chr18:51839510-51838887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 246
               

               Conread position:
               20-636
               

               Cow position:
               chr18:51969074-51969677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               380
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               338, 154
               

               Conread position:
               20-636
               

               Cow position:
               chr18:52447075-52447698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 259
               
21-485UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr18:44397967-44397503 (view  custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 177
               
21-512UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:56329379-56328888 (view  custom track)

               
               
               
Alignm length: 496

               
               
               
Alignm identity: 330

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 181, 162
21-515UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:43022851-43022357 (view  custom track)

               
               
               
Alignm length: 501

               
               
               
Alignm identity: 328

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 92, 75

               
               
               Conread position:21-515
               
               
               Cow position:chr18:43022935-43022441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:21-544
               
               
               Cow position:chr18:50022267-50021738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 169

               
               
               Conread position:21-562
               
               
               Cow position:chr18:42744746-42744205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:21-631
               
               
               Cow position:chr18:42675017-42674400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:21-635
               
               
               Cow position:chr18:42985172-42984551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:22-507
               
               
               Cow position:chr18:54967088-54967573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:297
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:22-561
               
               
               Cow position:chr18:43093533-43092991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):339, 335

               
               
               Conread position:23-517
               
               
               Cow position:chr18:44398133-44397640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 86

               
               
               Conread position:23-569
               
               
               Cow position:chr18:50049001-50048453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:23-594
               
               
               Cow position:chr18:50246215-50246789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 172

               
               
               Conread position:24-441
               
               
               Cow position:chr18:55066803-55066386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:24-501
               
               
               Cow position:chr18:53586356-53585879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:307
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):83, 90

               
               
               Conread position:24-507
               
               
               Cow position:chr18:42724449-42723966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 88

               
               
               Conread position:24-507
               
               
               Cow position:chr18:53587028-53586545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:24-512
               
               
               Cow position:chr18:49032739-49032251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 323

               
               
               Conread position:24-515
               
               
               Cow position:chr18:51874195-51874686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:24-515
               
               
               Cow position:chr18:55066887-55066396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 74

               
               
               Conread position:24-515
               
               
               Cow position:chr18:56247674-56247191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:24-518
               
               
               Cow position:chr18:56128848-56129340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):318, 285

               
               
               Conread position:24-561
               
               
               Cow position:chr18:49022617-49023157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:334
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):157, 171

               
               
               Conread position:24-594
               
               
               Cow position:chr18:50848726-50849299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 47

               
               
               Conread position:24-597
               
               
               Cow position:chr18:49032991-49032414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 85

               
               
               Conread position:24-631
               
               
               Cow position:chr18:43093447-43092833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 244

               
               
               Conread position:24-634
               
               
               Cow position:chr18:41197546-41198163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):489, 528

               
               
               Conread position:24-635
               
               
               Cow position:chr18:51789670-51789052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:24-636
               
               
               Cow position:chr18:43093939-43093332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:380
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):493, 216

               
               
               Conread position:25-508
               
               
               Cow position:chr18:56329543-56329061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 175

               
               
               Conread position:25-562
               
               
               Cow position:chr18:40306225-40306765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):494, 479

               
               
               Conread position:26-379
               
               
               Cow position:chr18:42744156-42743803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:26-428
               
               
               Cow position:chr18:50271770-50272171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):373, 0

               
               
               Conread position:26-429
               
               
               Cow position:chr18:50083843-50084246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:26-431
               
               
               Cow position:chr18:50246470-50246872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 93

               
               
               Conread position:26-494
               
               
               Cow position:chr18:52447837-52448306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 242

               
               
               Conread position:26-502
               
               
               Cow position:chr18:51400673-51401149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 94

               
               
               Conread position:26-503
               
               
               Cow position:chr18:55523869-55524347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:26-507
               
               
               Cow position:chr18:43120014-43119533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 74

               
               
               Conread position:26-507
               
               
               Cow position:chr18:52447921-52448403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 82

               
               
               Conread position:26-509
               
               
               Cow position:chr18:50250894-50251370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:26-511
               
               
               Cow position:chr18:56494069-56494551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:26-512
               
               
               Cow position:chr18:33064713-33064227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 45

               
               
               Conread position:26-512
               
               
               Cow position:chr18:50246302-50246788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 70

               
               
               Conread position:26-536
               
               
               Cow position:chr18:43022510-43022002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 237

               
               
               Conread position:26-545
               
               
               Cow position:chr18:44240066-44240581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 80

               
               
               Conread position:26-558
               
               
               Cow position:chr18:44184493-44183958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 237

               
               
               Conread position:26-560
               
               
               Cow position:chr18:55523785-55524322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 77

               
               
               Conread position:26-561
               
               
               Cow position:chr18:56330046-56329508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:26-562
               
               
               Cow position:chr18:42791777-42792316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):487, 0

               
               
               Conread position:26-573
               
               
               Cow position:chr18:40075080-40075629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:348
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):88, 63

               
               
               Conread position:26-573
               
               
               Cow position:chr18:42985503-42984954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 174

               
               
               Conread position:26-573
               
               
               Cow position:chr18:43175047-43174498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 162

               
               
               Conread position:26-573
               
               
               Cow position:chr18:50099368-50099917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 63

               
               
               Conread position:26-573
               
               
               Cow position:chr18:52428110-52428659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 173

               
               
               Conread position:26-589
               
               
               Cow position:chr18:52428362-52428928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 173

               
               
               Conread position:26-589
               
               
               Cow position:chr18:52433543-52434109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 173

               
               
               Conread position:26-594
               
               
               Cow position:chr18:41197884-41198455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 243

               
               
               Conread position:26-594
               
               
               Cow position:chr18:43023014-43022443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):491, 536

               
               
               Conread position:26-594
               
               
               Cow position:chr18:50246134-50246705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 70

               
               
               Conread position:26-597
               
               
               Cow position:chr18:56247756-56247189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 237

               
               
               Conread position:26-636
               
               
               Cow position:chr18:50083591-50084208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 93

               
               
               Conread position:26-636
               
               
               Cow position:chr18:52447333-52447950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):487, 536

               
               
               Conread position:26-636
               
               
               Cow position:chr18:52447585-52448202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):490, 510

               
               
               Conread position:26-636
               
               
               Cow position:chr18:52447669-52448286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 242

               
               
               Conread position:27-512
               
               
               Cow position:chr18:43175298-43174813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 255

               
               
               Conread position:27-573
               
               
               Cow position:chr18:51765520-51764972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:342
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):63, 70

               
               
               Conread position:27-597
               
               
               Cow position:chr18:55008451-55009023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:356
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 58

               
               
               Conread position:27-632
               
               
               Cow position:chr18:44254081-44253473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:30-470
               
               
               Cow position:chr18:49022875-49023315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:30-562
               
               
               Cow position:chr18:50245970-50246505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:31-558
               
               
               Cow position:chr18:42791698-42792228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:31-596
               
               
               Cow position:chr18:55017774-55018343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:358
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:32-490
               
               
               Cow position:chr18:50099878-50100334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:32-508
               
               
               Cow position:chr18:33064623-33064148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 323

               
               
               Conread position:32-594
               
               
               Cow position:chr18:42791363-42791928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 171

               
               
               Conread position:33-515
               
               
               Cow position:chr18:40074919-40075401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):78, 103

               
               
               Conread position:34-430
               
               
               Cow position:chr18:51367614-51367218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):80, 61

               
               
               Conread position:34-502
               
               
               Cow position:chr18:51812483-51812015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 232

               
               
               Conread position:34-507
               
               
               Cow position:chr18:55523457-55523930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:34-562
               
               
               Cow position:chr18:50083347-50083878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 85

               
               
               Conread position:35-343
               
               
               Cow position:chr18:52011873-52011565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-354
               
               
               Cow position:chr18:40085954-40085634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):148, 153

               
               
               Conread position:35-387
               
               
               Cow position:chr18:40306991-40307343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):169, 163

               
               
               Conread position:35-387
               
               
               Cow position:chr18:49022964-49023316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):167, 147

               
               
               Conread position:35-394
               
               
               Cow position:chr18:56329197-56328838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-407
               
               
               Cow position:chr18:50849157-50849528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):340, 0

               
               
               Conread position:35-416
               
               
               Cow position:chr18:14453222-14452841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 56

               
               
               Conread position:35-417
               
               
               Cow position:chr18:42693310-42692928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):139, 77

               
               
               Conread position:35-423
               
               
               Cow position:chr18:50251149-50251537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 75

               
               
               Conread position:35-463
               
               
               Cow position:chr18:42744231-42743803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 60

               
               
               Conread position:35-463
               
               
               Cow position:chr18:49032476-49032048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-477
               
               
               Cow position:chr18:50246395-50246837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 61

               
               
               Conread position:35-486
               
               
               Cow position:chr18:55497640-55497189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 88

               
               
               Conread position:35-486
               
               
               Cow position:chr18:56316283-56316734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 177

               
               
               Conread position:35-489
               
               
               Cow position:chr18:53571877-53572318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:35-491
               
               
               Cow position:chr18:56247498-56247051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:35-492
               
               
               Cow position:chr18:56128187-56128644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:286
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-493
               
               
               Cow position:chr18:14453786-14453325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):243, 235

               
               
               Conread position:35-494
               
               
               Cow position:chr18:44253334-44252883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:35-502
               
               
               Cow position:chr18:50250984-50251446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):56, 83

               
               
               Conread position:35-507
               
               
               Cow position:chr18:49033232-49032760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 85

               
               
               Conread position:35-507
               
               
               Cow position:chr18:50848653-50849125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 126

               
               
               Conread position:35-508
               
               
               Cow position:chr18:50083768-50084241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:35-508
               
               
               Cow position:chr18:50245723-50246196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:298
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:35-508
               
               
               Cow position:chr18:52012209-52011737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:35-509
               
               
               Cow position:chr18:50099797-50100270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 79

               
               
               Conread position:35-512
               
               
               Cow position:chr18:33064116-33063639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:35-512
               
               
               Cow position:chr18:33064284-33063807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 246

               
               
               Conread position:35-512
               
               
               Cow position:chr18:42827470-42827952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):454, 0

               
               
               Conread position:35-512
               
               
               Cow position:chr18:49022796-49023273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 126

               
               
               Conread position:35-512
               
               
               Cow position:chr18:52012125-52011648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:35-512
               
               
               Cow position:chr18:56248175-56247690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:311
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):324, 12

               
               
               Conread position:35-512
               
               
               Cow position:chr18:56329785-56329308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 148

               
               
               Conread position:35-512
               
               
               Cow position:chr18:56329869-56329392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:35-512
               
               
               Cow position:chr18:56329953-56329476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 117

               
               
               Conread position:35-512
               
               
               Cow position:chr18:56330121-56329644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:35-515
               
               
               Cow position:chr18:22634540-22635018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:35-515
               
               
               Cow position:chr18:42985326-42984846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:35-515
               
               
               Cow position:chr18:44154217-44153744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:35-515
               
               
               Cow position:chr18:53586429-53585950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:302
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:35-515
               
               
               Cow position:chr18:53586933-53586453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:35-535
               
               
               Cow position:chr18:33064200-33063702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 239

               
               
               Conread position:35-560
               
               
               Cow position:chr18:50848401-50848929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:35-561
               
               
               Cow position:chr18:55523626-55524155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:338
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:35-562
               
               
               Cow position:chr18:33064872-33064342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 161

               
               
               Conread position:35-562
               
               
               Cow position:chr18:42791450-42791980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:35-562
               
               
               Cow position:chr18:50099209-50099739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:35-569
               
               
               Cow position:chr18:56329617-56329081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):482, 522

               
               
               Conread position:35-573
               
               
               Cow position:chr18:42791534-42792074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):474, 527

               
               
               Conread position:35-573
               
               
               Cow position:chr18:50848485-50849025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:35-573
               
               
               Cow position:chr18:51367948-51367409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 78

               
               
               Conread position:35-588
               
               
               Cow position:chr18:50281656-50282212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:348
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:35-589
               
               
               Cow position:chr18:50099125-50099681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:35-594
               
               
               Cow position:chr18:40075005-40075567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:345
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:35-594
               
               
               Cow position:chr18:42791870-42792432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 60

               
               
               Conread position:35-594
               
               
               Cow position:chr18:50059137-50058575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):477, 527

               
               
               Conread position:35-594
               
               
               Cow position:chr18:50099545-50100107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:35-594
               
               
               Cow position:chr18:50271443-50272005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 85

               
               
               Conread position:35-594
               
               
               Cow position:chr18:53560160-53560722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 54

               
               
               Conread position:35-594
               
               
               Cow position:chr18:55067044-55066482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 85

               
               
               Conread position:35-596
               
               
               Cow position:chr18:42837954-42837389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 233

               
               
               Conread position:35-596
               
               
               Cow position:chr18:56493910-56494475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:35-636
               
               
               Cow position:chr18:42675255-42674647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 316

               
               
               Conread position:36-505
               
               
               Cow position:chr18:42694065-42693596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:36-636
               
               
               Cow position:chr18:51789907-51789303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:365
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:37-569
               
               
               Cow position:chr18:49033398-49032864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):480, 525

               
               
               Conread position:38-508
               
               
               Cow position:chr18:22634625-22635095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:303
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:38-508
               
               
               Cow position:chr18:42960314-42959844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 235

               
               
               Conread position:38-594
               
               
               Cow position:chr18:56493656-56494220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:343
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:38-636
               
               
               Cow position:chr18:42675336-42674731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 160

               
               
               Conread position:39-508
               
               
               Cow position:chr18:52012037-52011569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:39-515
               
               
               Cow position:chr18:56128359-56128835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-527
               
               
               Cow position:chr18:40306827-40307313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):218, 229

               
               
               Conread position:39-573
               
               
               Cow position:chr18:40086194-40085665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:350
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:39-594
               
               
               Cow position:chr18:54993058-54993616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:39-636
               
               
               Cow position:chr18:44398453-44397849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 159

               
               
               Conread position:40-442
               
               
               Cow position:chr18:43048741-43048339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-516
               
               
               Cow position:chr18:52012288-52011812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 156

               
               
               Conread position:40-597
               
               
               Cow position:chr18:53560081-53560642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):476, 522

               
               
               Conread position:40-636
               
               
               Cow position:chr18:52446927-52447530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):477, 522

               
               
               Conread position:41-460
               
               
               Cow position:chr18:54967275-54967694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:41-508
               
               
               Cow position:chr18:42960473-42960012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):152, 116

               
               
               Conread position:41-508
               
               
               Cow position:chr18:51766093-51765627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:41-594
               
               
               Cow position:chr18:54979800-54980356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:355
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:43-596
               
               
               Cow position:chr18:44184728-44184171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 155

               
               
               Conread position:43-636
               
               
               Cow position:chr18:43094004-43093416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:386
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:44-508
               
               
               Cow position:chr18:40306664-40307127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):460, 0

               
               
               Conread position:44-515
               
               
               Cow position:chr18:40306496-40306967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 154

               
               
               Conread position:45-500
               
               
               Cow position:chr18:14453296-14452841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:45-508
               
               
               Cow position:chr18:50049147-50048684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 68

               
               
               Conread position:46-481
               
               
               Cow position:chr18:49021728-49022164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 56

               
               
               Conread position:46-505
               
               
               Cow position:chr18:54980057-54980516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 49

               
               
               Conread position:46-515
               
               
               Cow position:chr18:40306330-40306799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):211, 222

               
               
               Conread position:46-515
               
               
               Cow position:chr18:54967697-54968164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:46-597
               
               
               Cow position:chr18:54979469-54980024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:340
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:46-603
               
               
               Cow position:chr18:54992729-54993289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:347
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:46-632
               
               
               Cow position:chr18:54993401-54993991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:370
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):55, 49

               
               
               Conread position:47-470
               
               
               Cow position:chr18:51765332-51764909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:47-492
               
               
               Cow position:chr18:53635966-53635521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:280
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-508
               
               
               Cow position:chr18:51765416-51764955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:47-508
               
               
               Cow position:chr18:53635546-53635086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):457, 0

               
               
               Conread position:47-508
               
               
               Cow position:chr18:56128619-56129079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 220

               
               
               Conread position:47-512
               
               
               Cow position:chr18:53635714-53635249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):170, 153

               
               
               Conread position:47-512
               
               
               Cow position:chr18:56128451-56128916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):157, 152

               
               
               Conread position:47-517
               
               
               Cow position:chr18:53610221-53609752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):467, 0

               
               
               Conread position:47-522
               
               
               Cow position:chr18:53635798-53635324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):467, 0

               
               
               Conread position:49-512
               
               
               Cow position:chr18:53610387-53609924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-515
               
               
               Cow position:chr18:53525686-53526154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:49-592
               
               
               Cow position:chr18:54979302-54979850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:343
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:49-594
               
               
               Cow position:chr18:54992562-54993112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:342
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:49-636
               
               
               Cow position:chr18:53509232-53509828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:371
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:52-507
               
               
               Cow position:chr18:51400279-51400734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:53-494
               
               
               Cow position:chr18:51838786-51838350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:53-508
               
               
               Cow position:chr18:33065022-33064567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:55-569
               
               
               Cow position:chr18:50848169-50848685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:56-570
               
               
               Cow position:chr18:42827407-42827923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 130

               
               
               Conread position:57-599
               
               
               Cow position:chr18:43175352-43174806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:58-507
               
               
               Cow position:chr18:53636125-53635674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:58-507
               
               
               Cow position:chr18:56128040-56128491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:58-561
               
               
               Cow position:chr18:33093101-33092595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 134

               
               
               Conread position:61-597
               
               
               Cow position:chr18:42694208-42693668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:330
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:65-635
               
               
               Cow position:chr18:41197503-41198080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):447, 487

               
               
               Conread position:71-506
               
               
               Cow position:chr18:14454002-14453567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 126

               
               
               Conread position:71-515
               
               
               Cow position:chr18:44253873-44253429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:71-594
               
               
               Cow position:chr18:43175590-43175064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 110

               
               
               Conread position:73-573
               
               
               Cow position:chr18:43094219-43093724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:304
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):444, 23

               
               
               Conread position:73-636
               
               
               Cow position:chr18:1417854-1418424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):440, 497

               
               
               Conread position:80-636
               
               
               Cow position:chr18:43093724-43093164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:80-636
               
               
               Cow position:chr18:51813106-51812546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:357
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):29, 34

               
               
               Conread position:81-512
               
               
               Cow position:chr18:50295216-50295647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 125

               
               
               Conread position:85-319
               
               
               Cow position:chr18:43053427-43053193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 115

               
               
               Conread position:90-562
               
               
               Cow position:chr18:50059670-50059195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:94-515
               
               
               Cow position:chr18:53498010-53498437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):264, 269

               
               
               Conread position:109-562
               
               
               Cow position:chr18:51969313-51969767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):169, 160

               
               
               Conread position:115-485
               
               
               Cow position:chr18:42724778-42724408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:117-494
               
               
               Cow position:chr18:56248177-56247808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:118-419
               
               
               Cow position:chr18:44153967-44153672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:118-508
               
               
               Cow position:chr18:54967016-54967405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):99, 89

               
               
               Conread position:118-515
               
               
               Cow position:chr18:42960480-42960089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:118-515
               
               
               Cow position:chr18:43023090-43022693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:118-562
               
               
               Cow position:chr18:50049246-50048795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 235

               
               
               Conread position:118-596
               
               
               Cow position:chr18:44253335-44252861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):86, 80

               
               
               Conread position:118-635
               
               
               Cow position:chr18:42675340-42674816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 69

               
               
               Conread position:119-494
               
               
               Cow position:chr18:52012459-52012086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:119-515
               
               
               Cow position:chr18:56434111-56434507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):149, 144

               
               
               Conread position:119-561
               
               
               Cow position:chr18:43167606-43168051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):234, 228

               
               
               Conread position:120-630
               
               
               Cow position:chr18:42985577-42985060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 227

               
               
               Conread position:121-636
               
               
               Cow position:chr18:44398455-44397933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:123-635
               
               
               Cow position:chr18:40074925-40075444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:331
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):338, 311

               
               
               Conread position:124-516
               
               
               Cow position:chr18:43048741-43048349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 332

               
               
               Conread position:125-636
               
               
               Cow position:chr18:51766093-51765576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:127-595
               
               
               Cow position:chr18:50098965-50099437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 77

               
               
               Conread position:131-409
               
               
               Cow position:chr18:42724594-42724316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 48

               
               
               Conread position:131-516
               
               
               Cow position:chr18:53525686-53526071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:131-594
               
               
               Cow position:chr18:54967113-54967579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:133-447
               
               
               Cow position:chr18:51873695-51874010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:136-505
               
               
               Cow position:chr18:56128036-56128405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:136-512
               
               
               Cow position:chr18:53636129-53635753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:137-566
               
               
               Cow position:chr18:14453288-14452856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 59

               
               
               Conread position:137-589
               
               
               Cow position:chr18:56316049-56316503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 413

               
               
               Conread position:137-594
               
               
               Cow position:chr18:33065022-33064562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:137-636
               
               
               Cow position:chr18:51838786-51838285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):280, 195

               
               
               Conread position:138-525
               
               
               Cow position:chr18:53610382-53609996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:140-559
               
               
               Cow position:chr18:56330184-56329760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 128

               
               
               Conread position:141-631
               
               
               Cow position:chr18:14454016-14453519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:141-635
               
               
               Cow position:chr18:43120403-43119902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 212

               
               
               Conread position:142-485
               
               
               Cow position:chr18:49022233-49022576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:142-561
               
               
               Cow position:chr18:50031061-50030640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:148-636
               
               
               Cow position:chr18:51839550-51839055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):109, 121

               
               
               Conread position:150-574
               
               
               Cow position:chr18:56248225-56247810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):386, 48

               
               
               Conread position:160-594
               
               
               Cow position:chr18:53559697-53560134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:164-570
               
               
               Cow position:chr18:50250946-50251352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:164-594
               
               
               Cow position:chr18:50083309-50083742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:164-596
               
               
               Cow position:chr18:55523335-55523771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:173-515
               
               
               Cow position:chr18:40086982-40086645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:189-635
               
               
               Cow position:chr18:42837968-42837515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):332, 0

               
               
               Conread position:189-636
               
               
               Cow position:chr18:14453321-14452866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:190-507
               
               
               Cow position:chr18:50251759-50252076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 131

               
               
               Conread position:193-592
               
               
               Cow position:chr18:54966923-54967325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 7

               
               
               Conread position:194-508
               
               
               Cow position:chr18:56267485-56267174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:194-512
               
               
               Cow position:chr18:50031093-50030777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):294, 154

               
               
               Conread position:194-512
               
               
               Cow position:chr18:56330215-56329896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):8, 159

               
               
               Conread position:200-512
               
               
               Cow position:chr18:43023092-43022780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 63

               
               
               Conread position:201-406
               
               
               Cow position:chr18:43053395-43053190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-594
               
               
               Cow position:chr18:54967015-54967411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):150, 140

               
               
               Conread position:201-636
               
               
               Cow position:chr18:14454040-14453598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 68

               
               
               Conread position:202-636
               
               
               Cow position:chr18:1417815-1418256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):310, 354

               
               
               Conread position:203-512
               
               
               Cow position:chr18:52012459-52012152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:203-515
               
               
               Cow position:chr18:50059725-50059413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:203-589
               
               
               Cow position:chr18:50098957-50099345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:204-515
               
               
               Cow position:chr18:44239740-44240051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 59

               
               
               Conread position:206-507
               
               
               Cow position:chr18:43175698-43175406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):236, 98

               
               
               Conread position:210-562
               
               
               Cow position:chr18:50083271-50083626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:213-588
               
               
               Cow position:chr18:55523300-55523678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):303, 324

               
               
               Conread position:214-486
               
               
               Cow position:chr18:53610474-53610202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:214-515
               
               
               Cow position:chr18:53509231-53509532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):125, 138

               
               
               Conread position:214-515
               
               
               Cow position:chr18:53525685-53525986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):127, 149

               
               
               Conread position:215-636
               
               
               Cow position:chr18:51969018-51969427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:217-493
               
               
               Cow position:chr18:51873695-51873972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 52

               
               
               Conread position:219-529
               
               
               Cow position:chr18:40306167-40306476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):285, 0

               
               
               Conread position:220-515
               
               
               Cow position:chr18:56128036-56128331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:224-490
               
               
               Cow position:chr18:43053456-43053190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-573
               
               
               Cow position:chr18:40324881-40324530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:234-508
               
               
               Cow position:chr18:50295201-50295475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):155, 140

               
               
               Conread position:236-597
               
               
               Cow position:chr18:56493772-56494140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:237-635
               
               
               Cow position:chr18:43175592-43175187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:258-635
               
               
               Cow position:chr18:42837983-42837599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):260, 304

               
               
               Conread position:269-509
               
               
               Cow position:chr18:50098939-50099178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:269-562
               
               
               Cow position:chr18:50271425-50271721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 79

               
               
               Conread position:269-562
               
               
               Cow position:chr18:50281638-50281934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:282-515
               
               
               Cow position:chr18:42985583-42985350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:293-566
               
               
               Cow position:chr18:51873689-51873964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):155, 12

               
               
               Conread position:293-569
               
               
               Cow position:chr18:33093118-33092840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):225, 246

               
               
               Conread position:293-631
               
               
               Cow position:chr18:40086948-40086606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 54

               
               
               Conread position:314-512
               
               
               Cow position:chr18:41197501-41197697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:318-636
               
               
               Cow position:chr18:50295201-50295526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:325-562
               
               
               Cow position:chr18:43053439-43053199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):192, 227

               
               
               Conread position:1-301
               
               
               Cow position:chr19:14940775-14941076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:1-330
               
               
               Cow position:chr19:20635350-20635020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:1-462
               
               
               Cow position:chr19:14940607-14941069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-507
               
               
               Cow position:chr19:23614135-23614642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:1-512
               
               
               Cow position:chr19:23596979-23597488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:1-517
               
               
               Cow position:chr19:23597144-23597661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:1-589
               
               
               Cow position:chr19:23614303-23614895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:1-594
               
               
               Cow position:chr19:14940019-14940616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:1-594
               
               
               Cow position:chr19:14960360-14959767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:2-562
               
               
               Cow position:chr19:23596897-23597457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 136

               
               
               Conread position:2-577
               
               
               Cow position:chr19:23614556-23615134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:3-594
               
               
               Cow position:chr19:14959620-14959040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:377
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 267

               
               
               Conread position:3-636
               
               
               Cow position:chr19:23613885-23614526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:8-597
               
               
               Cow position:chr19:43570342-43569760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 11

               
               
               Conread position:14-562
               
               
               Cow position:chr19:14939950-14940500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):458, 25

               
               
               Conread position:14-589
               
               
               Cow position:chr19:23596826-23597399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:15-376
               
               
               Cow position:chr19:43570010-43569653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:17-424
               
               
               Cow position:chr19:14948418-14948012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):187, 14

               
               
               Conread position:17-507
               
               
               Cow position:chr19:14940288-14940778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 78

               
               
               Conread position:17-596
               
               
               Cow position:chr19:14960427-14959846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 165

               
               
               Conread position:17-596
               
               
               Cow position:chr19:23614488-23615071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 331

               
               
               Conread position:17-636
               
               
               Cow position:chr19:14940120-14940746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 103

               
               
               Conread position:18-635
               
               
               Cow position:chr19:20677412-20678036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 53

               
               
               Conread position:19-408
               
               
               Cow position:chr19:20635415-20635026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):334, 329

               
               
               Conread position:19-512
               
               
               Cow position:chr19:20677665-20678158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 100

               
               
               Conread position:19-588
               
               
               Cow position:chr19:23613482-23614054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 94

               
               
               Conread position:19-636
               
               
               Cow position:chr19:23613566-23614190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 53

               
               
               Conread position:19-636
               
               
               Cow position:chr19:23614238-23614862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:20-390
               
               
               Cow position:chr19:14959191-14958827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):335, 73

               
               
               Conread position:20-493
               
               
               Cow position:chr19:43570173-43569702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):451, 0

               
               
               Conread position:20-508
               
               
               Cow position:chr19:14960006-14959534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):145, 131

               
               
               Conread position:20-512
               
               
               Cow position:chr19:23649437-23649929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 167

               
               
               Conread position:20-515
               
               
               Cow position:chr19:23649689-23650184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 99

               
               
               Conread position:20-516
               
               
               Cow position:chr19:20678254-20678747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:20-544
               
               
               Cow position:chr19:20635582-20635059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 183

               
               
               Conread position:20-561
               
               
               Cow position:chr19:23613399-23613943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 161

               
               
               Conread position:20-596
               
               
               Cow position:chr19:14940459-14941039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):497, 542

               
               
               Conread position:20-636
               
               
               Cow position:chr19:14940375-14940998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:21-429
               
               
               Cow position:chr19:23650026-23650434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):183, 178

               
               
               Conread position:23-494
               
               
               Cow position:chr19:23649860-23650331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 90

               
               
               Conread position:24-397
               
               
               Cow position:chr19:23650113-23650486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:24-508
               
               
               Cow position:chr19:23649609-23650093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:24-517
               
               
               Cow position:chr19:20635494-20635002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 166

               
               
               Conread position:24-594
               
               
               Cow position:chr19:20677838-20678411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:24-594
               
               
               Cow position:chr19:23649525-23650098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 258

               
               
               Conread position:25-508
               
               
               Cow position:chr19:20678091-20678574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 248

               
               
               Conread position:25-632
               
               
               Cow position:chr19:23613656-23614270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):496, 537

               
               
               Conread position:26-485
               
               
               Cow position:chr19:23597254-23597713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 171

               
               
               Conread position:26-512
               
               
               Cow position:chr19:23649947-23650433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 168

               
               
               Conread position:26-602
               
               
               Cow position:chr19:20677924-20678504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 168

               
               
               Conread position:32-594
               
               
               Cow position:chr19:20678014-20678579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 159

               
               
               Conread position:33-470
               
               
               Cow position:chr19:14960161-14959726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 348

               
               
               Conread position:35-507
               
               
               Cow position:chr19:23649788-23650260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):169, 165

               
               
               Conread position:35-584
               
               
               Cow position:chr19:23649284-23649832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 72

               
               
               Conread position:35-595
               
               
               Cow position:chr19:20678185-20678746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:35-607
               
               
               Cow position:chr19:20677765-20678341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 238

               
               
               Conread position:35-636
               
               
               Cow position:chr19:14959669-14959078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:378
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:38-470
               
               
               Cow position:chr19:14959257-14958831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:39-435
               
               
               Cow position:chr19:14948480-14948085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):165, 80

               
               
               Conread position:40-635
               
               
               Cow position:chr19:20635646-20635044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):483, 512

               
               
               Conread position:46-573
               
               
               Cow position:chr19:20677608-20678137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 151

               
               
               Conread position:55-636
               
               
               Cow position:chr19:14960475-14959887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 213

               
               
               Conread position:117-597
               
               
               Cow position:chr19:23649282-23649766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:319
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):72, 64

               
               
               Conread position:118-482
               
               
               Cow position:chr19:14959670-14959308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):246, 19

               
               
               Conread position:118-516
               
               
               Cow position:chr19:14916028-14916421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:119-512
               
               
               Cow position:chr19:14948484-14948092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):239, 84

               
               
               Conread position:125-512
               
               
               Cow position:chr19:14959254-14958873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 136

               
               
               Conread position:125-573
               
               
               Cow position:chr19:43570394-43569954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):387, 116

               
               
               Conread position:133-512
               
               
               Cow position:chr19:43570546-43570185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:140-596
               
               
               Cow position:chr19:23613351-23613811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 59

               
               
               Conread position:159-602
               
               
               Cow position:chr19:20677304-20677748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:202-512
               
               
               Cow position:chr19:14959670-14959362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:202-595
               
               
               Cow position:chr19:14916028-14916420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):138, 100

               
               
               Conread position:219-509
               
               
               Cow position:chr19:14960477-14960188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):285, 0

               
               
               Conread position:222-574
               
               
               Cow position:chr19:14915962-14916314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:237-507
               
               
               Cow position:chr19:20635701-20635431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:284-512
               
               
               Cow position:chr19:23649281-23649509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:303-573
               
               
               Cow position:chr19:14960477-14960205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):215, 255

               
               
               Conread position:356-632
               
               
               Cow position:chr19:23613315-23613598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:1-561
               
               
               Cow position:chr2:82799639-82800203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 197

               
               
               Conread position:1-569
               
               
               Cow position:chr2:78754861-78755431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:1-594
               
               
               Cow position:chr2:78755029-78755624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 102

               
               
               Conread position:2-512
               
               
               Cow position:chr2:5875150-5874641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:318
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:7-508
               
               
               Cow position:chr2:86465134-86465635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 207

               
               
               Conread position:7-562
               
               
               Cow position:chr2:78754632-78755174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):513, 73

               
               
               Conread position:8-565
               
               
               Cow position:chr2:78755873-78756430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 106

               
               
               Conread position:13-566
               
               
               Cow position:chr2:78754220-78754770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 222

               
               
               Conread position:14-502
               
               
               Cow position:chr2:5874634-5874147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:14-562
               
               
               Cow position:chr2:78754140-78754686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:339
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:15-505
               
               
               Cow position:chr2:82799570-82800060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 80

               
               
               Conread position:17-517
               
               
               Cow position:chr2:78755548-78756046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 46

               
               
               Conread position:17-561
               
               
               Cow position:chr2:86465564-86466111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:335
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:18-399
               
               
               Cow position:chr2:86465901-86466280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 89

               
               
               Conread position:20-525
               
               
               Cow position:chr2:86465231-86465735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:321
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:20-561
               
               
               Cow position:chr2:82799491-82800035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 179

               
               
               Conread position:25-505
               
               
               Cow position:chr2:5874961-5874480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:298
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):6, 74

               
               
               Conread position:34-502
               
               
               Cow position:chr2:5874699-5874231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 85

               
               
               Conread position:35-387
               
               
               Cow position:chr2:82800094-82800446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:35-478
               
               
               Cow position:chr2:5874782-5874339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:285
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):75, 85

               
               
               Conread position:35-560
               
               
               Cow position:chr2:78754812-78755341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 60

               
               
               Conread position:35-562
               
               
               Cow position:chr2:82799758-82800288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:35-588
               
               
               Cow position:chr2:78755232-78755784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):477, 106

               
               
               Conread position:35-588
               
               
               Cow position:chr2:82799842-82800398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:40-512
               
               
               Cow position:chr2:86465083-86465555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:41-470
               
               
               Cow position:chr2:82800016-82800445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 219

               
               
               Conread position:47-507
               
               
               Cow position:chr2:82799938-82800398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 151

               
               
               Conread position:76-430
               
               
               Cow position:chr2:5875159-5874807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:118-507
               
               
               Cow position:chr2:86465077-86465466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):165, 176

               
               
               Conread position:118-520
               
               
               Cow position:chr2:48689478-48689078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):239, 75

               
               
               Conread position:155-512
               
               
               Cow position:chr2:82799458-82799815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:156-509
               
               
               Cow position:chr2:78754114-78754461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):197, 53

               
               
               Conread position:161-471
               
               
               Cow position:chr2:86465960-86466268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):116, 103

               
               
               Conread position:208-516
               
               
               Cow position:chr2:86465923-86466229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):149, 140

               
               
               Conread position:238-507
               
               
               Cow position:chr2:82799457-82799726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-493
               
               
               Cow position:chr21:12658864-12659354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-486
               
               
               Cow position:chr21:12659294-12659767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:283
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):345, 12

               
               
               Conread position:19-423
               
               
               Cow position:chr21:12608798-12608394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:20-314
               
               
               Cow position:chr21:34222835-34222541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 51

               
               
               Conread position:20-501
               
               
               Cow position:chr21:12608461-12607980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):135, 131

               
               
               Conread position:20-530
               
               
               Cow position:chr21:12608881-12608373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):494, 0

               
               
               Conread position:24-486
               
               
               Cow position:chr21:12659473-12659935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:24-512
               
               
               Cow position:chr21:12659053-12659541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):151, 170

               
               
               Conread position:25-482
               
               
               Cow position:chr21:34222998-34222541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 47

               
               
               Conread position:35-429
               
               
               Cow position:chr21:12608362-12607968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):169, 158

               
               
               Conread position:35-486
               
               
               Cow position:chr21:12658980-12659431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-486
               
               
               Cow position:chr21:12659400-12659851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):223, 234

               
               
               Conread position:35-492
               
               
               Cow position:chr21:12608698-12608241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-492
               
               
               Cow position:chr21:12659148-12659605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:35-507
               
               
               Cow position:chr21:12659232-12659704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-492
               
               
               Cow position:chr21:12658814-12659269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-493
               
               
               Cow position:chr21:12608923-12608492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:116-531
               
               
               Cow position:chr21:34223075-34222662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 174

               
               
               Conread position:124-528
               
               
               Cow position:chr21:34222983-34222581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 82

               
               
               Conread position:203-561
               
               
               Cow position:chr21:34223153-34222795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:1-481
               
               
               Cow position:chr22:12458243-12457762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:1-493
               
               
               Cow position:chr22:12418998-12418505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:1-508
               
               
               Cow position:chr22:14430179-14430687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:1-509
               
               
               Cow position:chr22:12458579-12458071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:1-512
               
               
               Cow position:chr22:14441989-14442501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:1-512
               
               
               Cow position:chr22:46654042-46654554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:1-517
               
               
               Cow position:chr22:12431795-12431279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 194

               
               
               Conread position:1-559
               
               
               Cow position:chr22:12458327-12457772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 270

               
               
               Conread position:1-571
               
               
               Cow position:chr22:12458411-12457838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 348

               
               
               Conread position:1-589
               
               
               Cow position:chr22:12385639-12385045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:1-589
               
               
               Cow position:chr22:14468004-14468596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:1-594
               
               
               Cow position:chr22:12432299-12431702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 543

               
               
               Conread position:1-594
               
               
               Cow position:chr22:14429843-14430440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:1-596
               
               
               Cow position:chr22:12399395-12398795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 552

               
               
               Conread position:1-609
               
               
               Cow position:chr22:14468088-14468699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:374
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:1-636
               
               
               Cow position:chr22:12475940-12475297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:2-512
               
               
               Cow position:chr22:12385470-12384957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 284

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12475602-12475292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:3-400
               
               
               Cow position:chr22:11641058-11641455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-512
               
               
               Cow position:chr22:14429762-14430271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 110

               
               
               Conread position:3-594
               
               
               Cow position:chr22:12476358-12475763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 558

               
               
               Conread position:3-636
               
               
               Cow position:chr22:12399890-12399256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 51

               
               
               Conread position:3-636
               
               
               Cow position:chr22:12498902-12499542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):343, 335

               
               
               Conread position:4-510
               
               
               Cow position:chr22:12432465-12431957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:4-512
               
               
               Cow position:chr22:12419077-12418570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:289
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:6-594
               
               
               Cow position:chr22:12399474-12398882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 547

               
               
               Conread position:6-600
               
               
               Cow position:chr22:12499241-12499839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 346

               
               
               Conread position:7-424
               
               
               Cow position:chr22:12431032-12430615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 77

               
               
               Conread position:7-462
               
               
               Cow position:chr22:12385378-12384923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-484
               
               
               Cow position:chr22:46654385-46654863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):463, 0

               
               
               Conread position:7-521
               
               
               Cow position:chr22:46654217-46654731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:16-312
               
               
               Cow position:chr22:12499671-12499967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 97

               
               
               Conread position:16-507
               
               
               Cow position:chr22:11640819-11641310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:17-485
               
               
               Cow position:chr22:12475755-12475287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 83

               
               
               Conread position:17-512
               
               
               Cow position:chr22:11640904-11641399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 182

               
               
               Conread position:17-594
               
               
               Cow position:chr22:12431358-12430778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:18-510
               
               
               Cow position:chr22:46654313-46654803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:311
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 5

               
               
               Conread position:18-573
               
               
               Cow position:chr22:12399629-12399072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 180

               
               
               Conread position:18-594
               
               
               Cow position:chr22:11640653-11641232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:18-600
               
               
               Cow position:chr22:14429693-14430279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:19-395
               
               
               Cow position:chr22:12418811-12418435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):178, 185

               
               
               Conread position:20-493
               
               
               Cow position:chr22:12431103-12430630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:20-594
               
               
               Cow position:chr22:12399711-12399134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 180

               
               
               Conread position:21-597
               
               
               Cow position:chr22:12399542-12398963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 179

               
               
               Conread position:23-596
               
               
               Cow position:chr22:12431688-12431111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 91

               
               
               Conread position:24-515
               
               
               Cow position:chr22:12431267-12430776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 329

               
               
               Conread position:24-573
               
               
               Cow position:chr22:12458471-12457920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 246

               
               
               Conread position:25-386
               
               
               Cow position:chr22:12399118-12398757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-508
               
               
               Cow position:chr22:12431602-12431119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:25-508
               
               
               Cow position:chr22:12432022-12431539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):410, 422

               
               
               Conread position:25-510
               
               
               Cow position:chr22:12458638-12458153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 76

               
               
               Conread position:26-363
               
               
               Cow position:chr22:12430929-12430592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 74

               
               
               Conread position:26-470
               
               
               Cow position:chr22:12399201-12398757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 87

               
               
               Conread position:26-479
               
               
               Cow position:chr22:12418888-12418435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 240

               
               
               Conread position:26-485
               
               
               Cow position:chr22:12499513-12499972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:26-515
               
               
               Cow position:chr22:12499429-12499918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:32-484
               
               
               Cow position:chr22:11641003-11641455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 329

               
               
               Conread position:35-312
               
               
               Cow position:chr22:11701417-11701694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:35-484
               
               
               Cow position:chr22:11666511-11666960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:35-508
               
               
               Cow position:chr22:12476409-12475936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:35-517
               
               
               Cow position:chr22:11701165-11701647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 229

               
               
               Conread position:35-561
               
               
               Cow position:chr22:12431844-12431315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 73

               
               
               Conread position:35-566
               
               
               Cow position:chr22:12431172-12430638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 235

               
               
               Conread position:35-573
               
               
               Cow position:chr22:12476241-12475701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 89

               
               
               Conread position:35-573
               
               
               Cow position:chr22:12499102-12499642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 66

               
               
               Conread position:35-594
               
               
               Cow position:chr22:12385688-12385124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 60

               
               
               Conread position:35-635
               
               
               Cow position:chr22:12431424-12430817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:35-635
               
               
               Cow position:chr22:12476157-12475550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):477, 527

               
               
               Conread position:35-636
               
               
               Cow position:chr22:12475989-12475381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 317

               
               
               Conread position:37-512
               
               
               Cow position:chr22:12419397-12418906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 10

               
               
               Conread position:39-594
               
               
               Cow position:chr22:14467959-14468517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:40-309
               
               
               Cow position:chr22:12385177-12384908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):135, 150

               
               
               Conread position:40-518
               
               
               Cow position:chr22:14430555-14431026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:301
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):77, 72

               
               
               Conread position:41-632
               
               
               Cow position:chr22:14430304-14430902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:365
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):139, 150

               
               
               Conread position:42-485
               
               
               Cow position:chr22:14442283-14442723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:42-509
               
               
               Cow position:chr22:12432341-12431875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 148

               
               
               Conread position:47-507
               
               
               Cow position:chr22:14442120-14442580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):160, 164

               
               
               Conread position:56-635
               
               
               Cow position:chr22:12431907-12431321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:71-507
               
               
               Cow position:chr22:11701117-11701553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):298, 290

               
               
               Conread position:71-517
               
               
               Cow position:chr22:11666463-11666909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):132, 118

               
               
               Conread position:71-597
               
               
               Cow position:chr22:12432480-12431951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 200

               
               
               Conread position:78-573
               
               
               Cow position:chr22:11640629-11641126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:112-589
               
               
               Cow position:chr22:12458635-12458155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):405, 448

               
               
               Conread position:114-502
               
               
               Cow position:chr22:12498845-12499233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 305

               
               
               Conread position:118-512
               
               
               Cow position:chr22:12385689-12385293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 240

               
               
               Conread position:118-512
               
               
               Cow position:chr22:12476410-12476016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:118-573
               
               
               Cow position:chr22:14441939-14442396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 34

               
               
               Conread position:118-573
               
               
               Cow position:chr22:14467954-14468411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 230

               
               
               Conread position:119-486
               
               
               Cow position:chr22:12544897-12545264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:119-515
               
               
               Cow position:chr22:12544645-12545041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 46

               
               
               Conread position:136-594
               
               
               Cow position:chr22:12432499-12432038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 130

               
               
               Conread position:143-636
               
               
               Cow position:chr22:46654017-46654517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 118

               
               
               Conread position:148-517
               
               
               Cow position:chr22:11640615-11640984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:149-512
               
               
               Cow position:chr22:12419017-12418654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:164-560
               
               
               Cow position:chr22:12544606-12545007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 100

               
               
               Conread position:184-429
               
               
               Cow position:chr22:12419335-12419090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:186-602
               
               
               Cow position:chr22:14429612-14430029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):265, 13

               
               
               Conread position:187-512
               
               
               Cow position:chr22:12385704-12385377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):291, 0

               
               
               Conread position:202-512
               
               
               Cow position:chr22:12498849-12499158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 67

               
               
               Conread position:209-512
               
               
               Cow position:chr22:12476486-12476184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:214-596
               
               
               Cow position:chr22:46654004-46654390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:226-507
               
               
               Cow position:chr22:11701104-11701385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:226-517
               
               
               Cow position:chr22:11666450-11666740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:263-508
               
               
               Cow position:chr22:12458652-12458407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 90

               
               
               Conread position:271-636
               
               
               Cow position:chr22:46653977-46654349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 70

               
               
               Conread position:302-594
               
               
               Cow position:chr22:12399927-12399638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):215, 88

               
               
               Conread position:1-378
               
               
               Cow position:chr23:24560441-24560063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 200

               
               
               Conread position:1-385
               
               
               Cow position:chr23:25724099-25723713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:1-398
               
               
               Cow position:chr23:25660348-25660746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 274

               
               
               Conread position:1-429
               
               
               Cow position:chr23:24535848-24535418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:1-493
               
               
               Cow position:chr23:24639581-24640074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:1-494
               
               
               Cow position:chr23:24626256-24626745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:1-512
               
               
               Cow position:chr23:25698627-25698115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:1-561
               
               
               Cow position:chr23:24639497-24640061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 504

               
               
               Conread position:1-594
               
               
               Cow position:chr23:24560861-24560264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:3-512
               
               
               Cow position:chr23:24639248-24639757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 179

               
               
               Conread position:3-523
               
               
               Cow position:chr23:25660183-25660702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 203

               
               
               Conread position:7-493
               
               
               Cow position:chr23:24536009-24535523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 191

               
               
               Conread position:14-512
               
               
               Cow position:chr23:25625990-25626487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:14-596
               
               
               Cow position:chr23:24522773-24522191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:16-562
               
               
               Cow position:chr23:24560677-24560128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 55

               
               
               Conread position:19-301
               
               
               Cow position:chr23:24546946-24546664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):185, 181

               
               
               Conread position:19-372
               
               
               Cow position:chr23:24522520-24522167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:20-330
               
               
               Cow position:chr23:24626441-24626749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):284, 0

               
               
               Conread position:20-385
               
               
               Cow position:chr23:24547029-24546664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):86, 76

               
               
               Conread position:20-429
               
               
               Cow position:chr23:24654082-24654485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):184, 179

               
               
               Conread position:20-508
               
               
               Cow position:chr23:24547281-24546793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 76

               
               
               Conread position:20-527
               
               
               Cow position:chr23:24639349-24639854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 51

               
               
               Conread position:20-573
               
               
               Cow position:chr23:24560757-24560202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:21-477
               
               
               Cow position:chr23:24547112-24546655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:25-524
               
               
               Cow position:chr23:25626585-25627088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 75

               
               
               Conread position:26-508
               
               
               Cow position:chr23:24547191-24546709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-512
               
               
               Cow position:chr23:24522678-24522195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 66

               
               
               Conread position:26-594
               
               
               Cow position:chr23:25626169-25626737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 174

               
               
               Conread position:26-596
               
               
               Cow position:chr23:25698685-25698111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:358
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):41, 45

               
               
               Conread position:34-332
               
               
               Cow position:chr23:24639783-24640081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):157, 167

               
               
               Conread position:35-508
               
               
               Cow position:chr23:24639448-24639921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-573
               
               
               Cow position:chr23:25626094-25626631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:41-463
               
               
               Cow position:chr23:25698502-25698080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:47-631
               
               
               Cow position:chr23:25626358-25626946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:49-450
               
               
               Cow position:chr23:24522576-24522173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:49-594
               
               
               Cow position:chr23:25660145-25660693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 46

               
               
               Conread position:59-512
               
               
               Cow position:chr23:24535872-24535419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):423, 11

               
               
               Conread position:67-510
               
               
               Cow position:chr23:24536033-24535590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-464
               
               
               Cow position:chr23:24654049-24654441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 280

               
               
               Conread position:80-469
               
               
               Cow position:chr23:25724102-25723713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 283

               
               
               Conread position:115-508
               
               
               Cow position:chr23:24639192-24639585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:118-573
               
               
               Cow position:chr23:24547267-24546810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 229

               
               
               Conread position:124-594
               
               
               Cow position:chr23:24560903-24560432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:132-514
               
               
               Cow position:chr23:24654024-24654408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:137-545
               
               
               Cow position:chr23:24626306-24626710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 127

               
               
               Conread position:159-515
               
               
               Cow position:chr23:25724107-25723751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 109

               
               
               Conread position:164-561
               
               
               Cow position:chr23:24547305-24546905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 34

               
               
               Conread position:195-567
               
               
               Cow position:chr23:24536074-24535698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:202-569
               
               
               Cow position:chr23:25626009-25626378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):73, 83

               
               
               Conread position:207-515
               
               
               Cow position:chr23:25724143-25723835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):150, 141

               
               
               Conread position:214-512
               
               
               Cow position:chr23:24522824-24522531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:217-531
               
               
               Cow position:chr23:24626302-24626614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 0

               
               
               Conread position:219-471
               
               
               Cow position:chr23:24521982-24521729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:233-636
               
               
               Cow position:chr23:24547320-24546910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 119

               
               
               Conread position:303-596
               
               
               Cow position:chr23:24547334-24547037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):209, 259

               
               
               Conread position:307-594
               
               
               Cow position:chr23:24522815-24522530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):272, 28

               
               
               Conread position:1-387
               
               
               Cow position:chr24:17077897-17077510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 186

               
               
               Conread position:1-567
               
               
               Cow position:chr24:17070487-17071057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:3-484
               
               
               Cow position:chr24:17035507-17035026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 69

               
               
               Conread position:3-573
               
               
               Cow position:chr24:17035675-17035103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 149

               
               
               Conread position:3-635
               
               
               Cow position:chr24:17035843-17035204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 92

               
               
               Conread position:3-636
               
               
               Cow position:chr24:17036596-17035959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:17-596
               
               
               Cow position:chr24:17070420-17071003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:17-636
               
               
               Cow position:chr24:17035997-17035371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 251

               
               
               Conread position:18-562
               
               
               Cow position:chr24:17078299-17077752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 77

               
               
               Conread position:19-470
               
               
               Cow position:chr24:17077962-17077511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-493
               
               
               Cow position:chr24:17035407-17034934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 250

               
               
               Conread position:19-562
               
               
               Cow position:chr24:17035575-17035029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):504, 0

               
               
               Conread position:20-488
               
               
               Cow position:chr24:17070591-17071059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 247

               
               
               Conread position:20-512
               
               
               Cow position:chr24:17078129-17077637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 184

               
               
               Conread position:20-552
               
               
               Cow position:chr24:17078045-17077510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 328

               
               
               Conread position:20-562
               
               
               Cow position:chr24:17036078-17035533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 247

               
               
               Conread position:20-562
               
               
               Cow position:chr24:17036414-17035869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 167

               
               
               Conread position:20-594
               
               
               Cow position:chr24:17036498-17035921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:20-636
               
               
               Cow position:chr24:17036246-17035623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):497, 542

               
               
               Conread position:26-635
               
               
               Cow position:chr24:17036324-17035708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:38-594
               
               
               Cow position:chr24:17078363-17077804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 76

               
               
               Conread position:39-412
               
               
               Cow position:chr24:17013147-17013519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:132-636
               
               
               Cow position:chr24:17078351-17077842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:290
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:138-573
               
               
               Cow position:chr24:17036548-17036111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 60

               
               
               Conread position:155-359
               
               
               Cow position:chr24:16986445-16986649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:155-525
               
               
               Cow position:chr24:17013179-17013548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:204-635
               
               
               Cow position:chr24:17078365-17077927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):309, 358

               
               
               Conread position:207-515
               
               
               Cow position:chr24:17013147-17013455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):156, 141

               
               
               Conread position:239-450
               
               
               Cow position:chr24:16986445-16986656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:1-228
               
               
               Cow position:chr25:327036-327263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:1-384
               
               
               Cow position:chr25:23420495-23420879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 199

               
               
               Conread position:1-432
               
               
               Cow position:chr25:34447470-34447891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):13, 199

               
               
               Conread position:1-464
               
               
               Cow position:chr25:33299431-33299888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:1-494
               
               
               Cow position:chr25:34732328-34731834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:1-494
               
               
               Cow position:chr25:36800995-36801477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:1-509
               
               
               Cow position:chr25:36801403-36801912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:1-510
               
               
               Cow position:chr25:34769760-34769250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-512
               
               
               Cow position:chr25:326694-327211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:322
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):139, 134

               
               
               Conread position:1-561
               
               
               Cow position:chr25:33298591-33299155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:1-567
               
               
               Cow position:chr25:34732412-34731842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:340
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:1-584
               
               
               Cow position:chr25:33298675-33299258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:1-594
               
               
               Cow position:chr25:33306270-33305681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:1-636
               
               
               Cow position:chr25:23420091-23420718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:395
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):120, 109

               
               
               Conread position:1-636
               
               
               Cow position:chr25:33299011-33299654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 185

               
               
               Conread position:2-384
               
               
               Cow position:chr25:326443-326825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:3-423
               
               
               Cow position:chr25:36801574-36801990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 111

               
               
               Conread position:3-479
               
               
               Cow position:chr25:326361-326836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 5

               
               
               Conread position:3-485
               
               
               Cow position:chr25:33127748-33128231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:3-507
               
               
               Cow position:chr25:33305933-33305434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 94

               
               
               Conread position:3-507
               
               
               Cow position:chr25:36800661-36801166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:3-507
               
               
               Cow position:chr25:36800830-36801334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-528
               
               
               Cow position:chr25:33305372-33304849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:3-636
               
               
               Cow position:chr25:33298762-33299402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:3-636
               
               
               Cow position:chr25:33298930-33299570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):428, 435

               
               
               Conread position:6-636
               
               
               Cow position:chr25:33299101-33299738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 164

               
               
               Conread position:7-558
               
               
               Cow position:chr25:33144884-33145435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):506, 152

               
               
               Conread position:7-596
               
               
               Cow position:chr25:33157438-33156845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 262

               
               
               Conread position:7-636
               
               
               Cow position:chr25:326616-327258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:388
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):284, 326

               
               
               Conread position:9-507
               
               
               Cow position:chr25:33298515-33299014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 185

               
               
               Conread position:16-594
               
               
               Cow position:chr25:34770164-34769583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):501, 544

               
               
               Conread position:17-512
               
               
               Cow position:chr25:326542-327043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:315
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):50, 54

               
               
               Conread position:17-528
               
               
               Cow position:chr25:23420344-23420853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 175

               
               
               Conread position:17-529
               
               
               Cow position:chr25:33299364-33299872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):461, 0

               
               
               Conread position:17-591
               
               
               Cow position:chr25:33306002-33305431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:17-596
               
               
               Cow position:chr25:34446983-34447566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 98

               
               
               Conread position:19-346
               
               
               Cow position:chr25:34769573-34769246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 90

               
               
               Conread position:19-359
               
               
               Cow position:chr25:18642208-18641865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):45, 53

               
               
               Conread position:19-486
               
               
               Cow position:chr25:34762876-34763340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 84

               
               
               Conread position:19-597
               
               
               Cow position:chr25:34769909-34769327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):498, 543

               
               
               Conread position:20-295
               
               
               Cow position:chr25:33157005-33156731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:20-386
               
               
               Cow position:chr25:34763378-34763741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:20-484
               
               
               Cow position:chr25:34763045-34763503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:20-527
               
               
               Cow position:chr25:34447154-34447659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 88

               
               
               Conread position:20-530
               
               
               Cow position:chr25:36801507-36802013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 99

               
               
               Conread position:20-558
               
               
               Cow position:chr25:33299283-33299822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):487, 519

               
               
               Conread position:20-561
               
               
               Cow position:chr25:36800595-36801139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):494, 0

               
               
               Conread position:20-585
               
               
               Cow position:chr25:34447322-34447883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):495, 381

               
               
               Conread position:20-594
               
               
               Cow position:chr25:33306171-33305597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 101

               
               
               Conread position:20-636
               
               
               Cow position:chr25:34769992-34769369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):493, 542

               
               
               Conread position:24-314
               
               
               Cow position:chr25:326975-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 72

               
               
               Conread position:24-377
               
               
               Cow position:chr25:346500-346853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:24-508
               
               
               Cow position:chr25:34732472-34731987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:25-463
               
               
               Cow position:chr25:33157168-33156731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 71

               
               
               Conread position:25-494
               
               
               Cow position:chr25:34762966-34763432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 155

               
               
               Conread position:25-561
               
               
               Cow position:chr25:36800768-36801307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):493, 514

               
               
               Conread position:26-494
               
               
               Cow position:chr25:33157251-33156784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 174

               
               
               Conread position:32-488
               
               
               Cow position:chr25:36844644-36844197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:35-480
               
               
               Cow position:chr25:22235892-22236337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):318, 332

               
               
               Conread position:35-485
               
               
               Cow position:chr25:25652419-25652869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):253, 247

               
               
               Conread position:35-492
               
               
               Cow position:chr25:25652335-25652792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:35-512
               
               
               Cow position:chr25:34447253-34447728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 79

               
               
               Conread position:35-515
               
               
               Cow position:chr25:34713929-34714409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):79, 73

               
               
               Conread position:35-594
               
               
               Cow position:chr25:34769809-34769247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):482, 535

               
               
               Conread position:35-597
               
               
               Cow position:chr25:34732545-34731979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:355
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 66

               
               
               Conread position:35-636
               
               
               Cow position:chr25:34770061-34769453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 234

               
               
               Conread position:40-512
               
               
               Cow position:chr25:33144833-33145302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 204

               
               
               Conread position:49-481
               
               
               Cow position:chr25:34732615-34732183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):42, 51

               
               
               Conread position:51-398
               
               
               Cow position:chr25:326918-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):117, 128

               
               
               Conread position:56-384
               
               
               Cow position:chr25:366725-367053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):148, 143

               
               
               Conread position:56-636
               
               
               Cow position:chr25:34446938-34447525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 144

               
               
               Conread position:57-461
               
               
               Cow position:chr25:346447-346853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 144

               
               
               Conread position:57-506
               
               
               Cow position:chr25:34762828-34763276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 293

               
               
               Conread position:69-512
               
               
               Cow position:chr25:33306449-33306011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 114

               
               
               Conread position:79-509
               
               
               Cow position:chr25:326352-326782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:85-595
               
               
               Cow position:chr25:23420328-23420841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 262

               
               
               Conread position:104-636
               
               
               Cow position:chr25:36801339-36801878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 76

               
               
               Conread position:118-517
               
               
               Cow position:chr25:34714096-34714494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):136, 151

               
               
               Conread position:118-528
               
               
               Cow position:chr25:22235891-22236299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:119-464
               
               
               Cow position:chr25:366704-367049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):139, 150

               
               
               Conread position:119-486
               
               
               Cow position:chr25:346427-346794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):139, 150

               
               
               Conread position:119-512
               
               
               Cow position:chr25:33127781-33128174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:119-512
               
               
               Cow position:chr25:33157494-33157101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:119-512
               
               
               Cow position:chr25:34713845-34714238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:119-594
               
               
               Cow position:chr25:36800526-36801004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:123-594
               
               
               Cow position:chr25:33305417-33304949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):375, 14

               
               
               Conread position:124-512
               
               
               Cow position:chr25:33157571-33157185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:133-482
               
               
               Cow position:chr25:326918-327265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:138-594
               
               
               Cow position:chr25:33144845-33145303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:293
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):7, 192

               
               
               Conread position:139-425
               
               
               Cow position:chr25:414775-414495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):219, 25

               
               
               Conread position:140-344
               
               
               Cow position:chr25:34433020-34433224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:140-490
               
               
               Cow position:chr25:34732104-34731755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:140-552
               
               
               Cow position:chr25:34433524-34433935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:141-393
               
               
               Cow position:chr25:427330-427582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):118, 128

               
               
               Conread position:141-512
               
               
               Cow position:chr25:33306461-33306099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:147-486
               
               
               Cow position:chr25:34762836-34763172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:155-561
               
               
               Cow position:chr25:33127733-33128142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):361, 348

               
               
               Conread position:160-509
               
               
               Cow position:chr25:414844-414495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:162-486
               
               
               Cow position:chr25:25652294-25652618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:188-558
               
               
               Cow position:chr25:33298527-33298900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 250

               
               
               Conread position:202-493
               
               
               Cow position:chr25:34433502-34433790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):265, 104

               
               
               Conread position:202-513
               
               
               Cow position:chr25:18642193-18641878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:207-409
               
               
               Cow position:chr25:34433003-34433205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:214-632
               
               
               Cow position:chr25:33127708-33128133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 348

               
               
               Conread position:215-594
               
               
               Cow position:chr25:33298470-33298852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:217-531
               
               
               Cow position:chr25:34732615-34732303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:219-509
               
               
               Cow position:chr25:346443-346733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):138, 128

               
               
               Conread position:223-584
               
               
               Cow position:chr25:36800462-36800822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:224-509
               
               
               Cow position:chr25:366725-367009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):280, 0

               
               
               Conread position:230-512
               
               
               Cow position:chr25:34762835-34763117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):134, 125

               
               
               Conread position:286-567
               
               
               Cow position:chr25:34433502-34433783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):156, 104

               
               
               Conread position:287-630
               
               
               Cow position:chr25:366704-367054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):224, 251

               
               
               Conread position:291-493
               
               
               Cow position:chr25:34433003-34433205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-596
               
               
               Cow position:chr27:21616079-21615480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:372
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):60, 132

               
               
               Conread position:35-462
               
               
               Cow position:chr27:21615792-21615368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:1-263
               
               
               Cow position:chr28:9290447-9290709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):185, 194

               
               
               Conread position:1-472
               
               
               Cow position:chr28:7757864-7758336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:1-482
               
               
               Cow position:chr28:9299095-9299563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 63

               
               
               Conread position:1-531
               
               
               Cow position:chr28:7757780-7758314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-560
               
               
               Cow position:chr28:9253047-9253612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 189

               
               
               Conread position:1-562
               
               
               Cow position:chr28:9252962-9253528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-567
               
               
               Cow position:chr28:7757527-7758098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-594
               
               
               Cow position:chr28:7757696-7758293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 560

               
               
               Conread position:1-636
               
               
               Cow position:chr28:7757444-7758087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:2-327
               
               
               Cow position:chr28:7810620-7810946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:3-408
               
               
               Cow position:chr28:11333771-11333371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):11, 184

               
               
               Conread position:3-429
               
               
               Cow position:chr28:7758438-7758865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:3-494
               
               
               Cow position:chr28:7810462-7810945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:3-558
               
               
               Cow position:chr28:9299014-9299558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):513, 179

               
               
               Conread position:3-573
               
               
               Cow position:chr28:9298599-9299166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:3-594
               
               
               Cow position:chr28:9252800-9253392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 63

               
               
               Conread position:3-597
               
               
               Cow position:chr28:7758203-7758784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):510, 109

               
               
               Conread position:3-635
               
               
               Cow position:chr28:11334190-11333551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 188

               
               
               Conread position:7-497
               
               
               Cow position:chr28:34696115-34696603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:7-507
               
               
               Cow position:chr28:34696031-34696531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:317
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):92, 88

               
               
               Conread position:8-381
               
               
               Cow position:chr28:9299342-9299711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:9-573
               
               
               Cow position:chr28:7810383-7810942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:14-571
               
               
               Cow position:chr28:9298191-9298748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:347
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:14-594
               
               
               Cow position:chr28:7810307-7810880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 7

               
               
               Conread position:15-594
               
               
               Cow position:chr28:7757376-7757957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:17-432
               
               
               Cow position:chr28:34679597-34679181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:17-594
               
               
               Cow position:chr28:9290133-9290707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 84

               
               
               Conread position:17-635
               
               
               Cow position:chr28:7757629-7758254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 54

               
               
               Conread position:18-561
               
               
               Cow position:chr28:9290050-9290590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:20-316
               
               
               Cow position:chr28:9253319-9253615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-492
               
               
               Cow position:chr28:11333836-11333371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):238, 246

               
               
               Conread position:26-429
               
               
               Cow position:chr28:34673493-34673896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 45

               
               
               Conread position:32-507
               
               
               Cow position:chr28:34695972-34696447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:35-431
               
               
               Cow position:chr28:11333906-11333510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 169

               
               
               Conread position:35-464
               
               
               Cow position:chr28:9299284-9299710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 81

               
               
               Conread position:35-481
               
               
               Cow position:chr28:7758387-7758832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 78

               
               
               Conread position:35-509
               
               
               Cow position:chr28:11333990-11333516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 75

               
               
               Conread position:35-636
               
               
               Cow position:chr28:9298797-9299388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):477, 18

               
               
               Conread position:39-594
               
               
               Cow position:chr28:9289901-9290456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:53-398
               
               
               Cow position:chr28:9299218-9299563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 136

               
               
               Conread position:56-449
               
               
               Cow position:chr28:33210228-33210622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:57-508
               
               
               Cow position:chr28:34695829-34696279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 63

               
               
               Conread position:80-507
               
               
               Cow position:chr28:34673379-34673806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:80-594
               
               
               Cow position:chr28:7810288-7810796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 106

               
               
               Conread position:102-567
               
               
               Cow position:chr28:9252566-9253029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 77

               
               
               Conread position:140-501
               
               
               Cow position:chr28:33210228-33210590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):332, 0

               
               
               Conread position:141-555
               
               
               Cow position:chr28:34673356-34673773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 55

               
               
               Conread position:159-635
               
               
               Cow position:chr28:7810283-7810757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 250

               
               
               Conread position:165-635
               
               
               Cow position:chr28:7757357-7757834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:184-573
               
               
               Cow position:chr28:9289802-9290187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):247, 21

               
               
               Conread position:184-594
               
               
               Cow position:chr28:34679598-34679184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):174, 52

               
               
               Conread position:203-493
               
               
               Cow position:chr28:11334242-11333952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:225-523
               
               
               Cow position:chr28:34673356-34673653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):126, 136

               
               
               Conread position:226-636
               
               
               Cow position:chr28:7757334-7757751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 0

               
               
               Conread position:283-573
               
               
               Cow position:chr28:7810248-7810531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):148, 36

               
               
               Conread position:283-573
               
               
               Cow position:chr28:11334246-11333954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):236, 277

               
               
               Conread position:9-305
               
               
               Cow position:chr29:39627139-39626842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:26-562
               
               
               Cow position:chr29:39627370-39626834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 94

               
               
               Conread position:155-573
               
               
               Cow position:chr29:39627577-39627160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 119

               
               
               Conread position:1-495
               
               
               Cow position:chr3:62722213-62721718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:1-636
               
               
               Cow position:chr3:62742805-62743427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:3-566
               
               
               Cow position:chr3:62722127-62721559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:3-636
               
               
               Cow position:chr3:68027037-68027679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 561

               
               
               Conread position:14-569
               
               
               Cow position:chr3:77351197-77350652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:351
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:14-596
               
               
               Cow position:chr3:62742904-62743468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:370
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):502, 103

               
               
               Conread position:16-600
               
               
               Cow position:chr3:68045729-68046317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 92

               
               
               Conread position:17-515
               
               
               Cow position:chr3:68045562-68046060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:313
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:17-636
               
               
               Cow position:chr3:62722364-62721738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:17-636
               
               
               Cow position:chr3:68026969-68027595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:382
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:20-512
               
               
               Cow position:chr3:68027224-68027716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:20-560
               
               
               Cow position:chr3:68045817-68046358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 90

               
               
               Conread position:20-561
               
               
               Cow position:chr3:62722277-62721733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:20-636
               
               
               Cow position:chr3:62742410-62743024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 178

               
               
               Conread position:22-262
               
               
               Cow position:chr3:68027478-68027718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):178, 170

               
               
               Conread position:24-636
               
               
               Cow position:chr3:68045653-68046272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 77

               
               
               Conread position:34-493
               
               
               Cow position:chr3:77351012-77350564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):223, 39

               
               
               Conread position:35-474
               
               
               Cow position:chr3:68027323-68027762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):236, 244

               
               
               Conread position:128-501
               
               
               Cow position:chr3:62742264-62742639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):6, 83

               
               
               Conread position:202-596
               
               
               Cow position:chr3:62742257-62742652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):326, 97

               
               
               Conread position:26-563
               
               
               Cow position:chr4:42314395-42313860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:351
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:32-636
               
               
               Cow position:chr4:42314557-42313946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:386
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 76

               
               
               Conread position:35-594
               
               
               Cow position:chr4:42315225-42314663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:343
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 60

               
               
               Conread position:47-558
               
               
               Cow position:chr4:42314711-42314196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:332
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:56-556
               
               
               Cow position:chr4:42315370-42314869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:17-339
               
               
               Cow position:chr5:34281386-34281714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 226

               
               
               Conread position:174-430
               
               
               Cow position:chr5:34281377-34281630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:269-512
               
               
               Cow position:chr5:34281386-34281628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 228

               
               
               Conread position:1-410
               
               
               Cow position:chr6:49341020-49341430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-512
               
               
               Cow position:chr6:49395907-49396413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:1-528
               
               
               Cow position:chr6:49340851-49341378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 505

               
               
               Conread position:1-594
               
               
               Cow position:chr6:49340768-49341365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:16-493
               
               
               Cow position:chr6:49396175-49396646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 56

               
               
               Conread position:17-573
               
               
               Cow position:chr6:49396254-49396812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:349
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):180, 187

               
               
               Conread position:17-636
               
               
               Cow position:chr6:49396008-49396628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:377
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):176, 183

               
               
               Conread position:19-262
               
               
               Cow position:chr6:49341207-49341449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 77

               
               
               Conread position:19-594
               
               
               Cow position:chr6:49340367-49340945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):509, 485

               
               
               Conread position:20-512
               
               
               Cow position:chr6:49361979-49362459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 53

               
               
               Conread position:20-566
               
               
               Cow position:chr6:49396425-49396974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:337
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):101, 90

               
               
               Conread position:24-486
               
               
               Cow position:chr6:49428448-49428910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 88

               
               
               Conread position:24-635
               
               
               Cow position:chr6:49340540-49341158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 243

               
               
               Conread position:25-339
               
               
               Cow position:chr6:49341129-49341443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):156, 161

               
               
               Conread position:26-573
               
               
               Cow position:chr6:49396347-49396896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 178

               
               
               Conread position:33-463
               
               
               Cow position:chr6:49362400-49362818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:34-409
               
               
               Cow position:chr6:49362485-49362848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 86

               
               
               Conread position:35-432
               
               
               Cow position:chr6:49429047-49429444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:35-485
               
               
               Cow position:chr6:49428795-49429245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:35-486
               
               
               Cow position:chr6:49428291-49428742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:35-486
               
               
               Cow position:chr6:49428879-49429330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):70, 85

               
               
               Conread position:35-487
               
               
               Cow position:chr6:49396524-49396976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):240, 249

               
               
               Conread position:35-494
               
               
               Cow position:chr6:49340971-49341430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 313

               
               
               Conread position:35-507
               
               
               Cow position:chr6:49428963-49429435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:35-594
               
               
               Cow position:chr6:49340719-49341281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 78

               
               
               Conread position:131-507
               
               
               Cow position:chr6:49362414-49362778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):66, 71

               
               
               Conread position:203-408
               
               
               Cow position:chr6:39664471-39664266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:215-483
               
               
               Cow position:chr6:49362330-49362598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):150, 154

               
               
               Conread position:1-351
               
               
               Cow position:chr7:18390442-18390793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:1-512
               
               
               Cow position:chr7:1439753-1440262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:1-568
               
               
               Cow position:chr7:42878828-42878256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-594
               
               
               Cow position:chr7:3180145-3180742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:1-594
               
               
               Cow position:chr7:42879333-42878735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:1-610
               
               
               Cow position:chr7:3180313-3180923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:2-365
               
               
               Cow position:chr7:1438362-1438726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:3-306
               
               
               Cow position:chr7:11600736-11600432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 93

               
               
               Conread position:3-359
               
               
               Cow position:chr7:1439921-1440277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:3-512
               
               
               Cow position:chr7:8242829-8243339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:331
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:3-512
               
               
               Cow position:chr7:8324931-8325441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 192

               
               
               Conread position:3-562
               
               
               Cow position:chr7:11601239-11600678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:3-594
               
               
               Cow position:chr7:3179979-3180574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 345

               
               
               Conread position:3-597
               
               
               Cow position:chr7:3179728-3180326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:3-636
               
               
               Cow position:chr7:11601156-11600516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 261

               
               
               Conread position:7-573
               
               
               Cow position:chr7:42879241-42878673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:7-594
               
               
               Cow position:chr7:42879073-42878483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 338

               
               
               Conread position:14-429
               
               
               Cow position:chr7:18390372-18390787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:14-430
               
               
               Cow position:chr7:1438292-1438707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):149, 8

               
               
               Conread position:14-594
               
               
               Cow position:chr7:1439684-1440263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):500, 7

               
               
               Conread position:16-509
               
               
               Cow position:chr7:1014401-1014887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):95, 103

               
               
               Conread position:17-358
               
               
               Cow position:chr7:1015152-1015495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:17-560
               
               
               Cow position:chr7:42878895-42878349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):495, 0

               
               
               Conread position:17-636
               
               
               Cow position:chr7:1014318-1014938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:385
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:18-635
               
               
               Cow position:chr7:3179659-3180283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 28

               
               
               Conread position:19-510
               
               
               Cow position:chr7:1438212-1438703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-531
               
               
               Cow position:chr7:11600972-11600462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):338, 329

               
               
               Conread position:19-595
               
               
               Cow position:chr7:1014902-1015483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:20-508
               
               
               Cow position:chr7:18390294-18390782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:20-635
               
               
               Cow position:chr7:11601055-11600432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 327

               
               
               Conread position:20-636
               
               
               Cow position:chr7:1014735-1015358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 81

               
               
               Conread position:21-521
               
               
               Cow position:chr7:8278064-8278562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:24-430
               
               
               Cow position:chr7:1439859-1440264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:24-512
               
               
               Cow position:chr7:18390046-18390534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:24-573
               
               
               Cow position:chr7:42879140-42878589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):489, 538

               
               
               Conread position:27-507
               
               
               Cow position:chr7:18390133-18390612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:32-512
               
               
               Cow position:chr7:8325633-8326113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:32-562
               
               
               Cow position:chr7:8325297-8325830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 172

               
               
               Conread position:32-596
               
               
               Cow position:chr7:8277908-8278474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:359
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:35-490
               
               
               Cow position:chr7:8278163-8278616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:283
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):84, 77

               
               
               Conread position:35-508
               
               
               Cow position:chr7:8325216-8325689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 162

               
               
               Conread position:35-573
               
               
               Cow position:chr7:8277827-8278367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 155

               
               
               Conread position:35-594
               
               
               Cow position:chr7:3179928-3180490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 165

               
               
               Conread position:35-594
               
               
               Cow position:chr7:18390225-18390787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 60

               
               
               Conread position:38-594
               
               
               Cow position:chr7:1014669-1015228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 76

               
               
               Conread position:38-635
               
               
               Cow position:chr7:1439452-1440056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 140

               
               
               Conread position:39-594
               
               
               Cow position:chr7:8325556-8326114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 242

               
               
               Conread position:41-512
               
               
               Cow position:chr7:11434747-11434283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:305
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:41-596
               
               
               Cow position:chr7:8243204-8243762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:358
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 70

               
               
               Conread position:41-636
               
               
               Cow position:chr7:8277413-8278015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:371
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):249, 218

               
               
               Conread position:42-594
               
               
               Cow position:chr7:8324887-8325442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:43-511
               
               
               Cow position:chr7:8277583-8278051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:47-596
               
               
               Cow position:chr7:8243545-8244095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:331
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):149, 137

               
               
               Conread position:54-512
               
               
               Cow position:chr7:8324730-8325188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:71-573
               
               
               Cow position:chr7:1014288-1014786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):207, 198

               
               
               Conread position:71-596
               
               
               Cow position:chr7:8242814-8243343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:334
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:115-404
               
               
               Cow position:chr7:11434512-11434223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):256, 239

               
               
               Conread position:119-573
               
               
               Cow position:chr7:8277323-8277779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:300
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):145, 161

               
               
               Conread position:139-635
               
               
               Cow position:chr7:11434819-11434321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:333
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:165-635
               
               
               Cow position:chr7:1438190-1438667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:170-433
               
               
               Cow position:chr7:11434541-11434278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:197-634
               
               
               Cow position:chr7:1439443-1439888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 144

               
               
               Conread position:214-636
               
               
               Cow position:chr7:42879370-42878941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 23

               
               
               Conread position:218-512
               
               
               Cow position:chr7:1014267-1014561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-594
               
               
               Cow position:chr7:18389995-18390367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):292, 337

               
               
               Conread position:226-636
               
               
               Cow position:chr7:8324735-8325152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:292-594
               
               
               Cow position:chr7:1014257-1014562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):237, 222

               
               
               Conread position:329-502
               
               
               Cow position:chr7:16643334-16643507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-393
               
               
               Cow position:chr8:46816997-46817390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-443
               
               
               Cow position:chr8:48406761-48406318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:1-447
               
               
               Cow position:chr8:55581270-55581717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:292
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):17, 109

               
               
               Conread position:1-561
               
               
               Cow position:chr8:46816073-46816637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-562
               
               
               Cow position:chr8:46816241-46816806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-573
               
               
               Cow position:chr8:46816325-46816900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 95

               
               
               Conread position:1-573
               
               
               Cow position:chr8:46816745-46817320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:1-594
               
               
               Cow position:chr8:46816577-46817174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 195

               
               
               Conread position:1-594
               
               
               Cow position:chr8:48407266-48406669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:1-635
               
               
               Cow position:chr8:45201046-45201688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:1-636
               
               
               Cow position:chr8:45201214-45201857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:1-636
               
               
               Cow position:chr8:46816157-46816800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:1-636
               
               
               Cow position:chr8:46816493-46817136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:2-537
               
               
               Cow position:chr8:45201467-45202006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:3-594
               
               
               Cow position:chr8:45201300-45201895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 184

               
               
               Conread position:3-596
               
               
               Cow position:chr8:48407431-48406834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:3-597
               
               
               Cow position:chr8:48407011-48406413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:7-461
               
               
               Cow position:chr8:46816920-46817374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:7-493
               
               
               Cow position:chr8:48406839-48406353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 119

               
               
               Conread position:7-636
               
               
               Cow position:chr8:46816416-46817052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 107

               
               
               Conread position:8-594
               
               
               Cow position:chr8:46815911-46816502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:12-635
               
               
               Cow position:chr8:45200974-45201604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 102

               
               
               Conread position:16-512
               
               
               Cow position:chr8:48407082-48406586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):257, 251

               
               
               Conread position:17-594
               
               
               Cow position:chr8:45200811-45201391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:17-636
               
               
               Cow position:chr8:46816006-46816632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:19-556
               
               
               Cow position:chr8:55581121-55581661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 244

               
               
               Conread position:20-545
               
               
               Cow position:chr8:46816849-46817377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 92

               
               
               Conread position:20-580
               
               
               Cow position:chr8:55581206-55581769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 268

               
               
               Conread position:20-594
               
               
               Cow position:chr8:55580954-55581531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 76

               
               
               Conread position:35-397
               
               
               Cow position:chr8:48406643-48406281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):167, 148

               
               
               Conread position:36-562
               
               
               Cow position:chr8:55580802-55581331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:39-596
               
               
               Cow position:chr8:48407647-48407086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):478, 521

               
               
               Conread position:40-635
               
               
               Cow position:chr8:55580890-55581492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:80-528
               
               
               Cow position:chr8:6958056-6957608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:86-635
               
               
               Cow position:chr8:45200796-45201352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):426, 538

               
               
               Conread position:116-635
               
               
               Cow position:chr8:48407654-48407128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 231

               
               
               Conread position:166-635
               
               
               Cow position:chr8:45200792-45201268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):346, 396

               
               
               Conread position:244-636
               
               
               Cow position:chr8:45200786-45201185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):268, 318

               
               
               Conread position:245-447
               
               
               Cow position:chr8:6958059-6957857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:280-635
               
               
               Cow position:chr8:48407658-48407296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):237, 282

               
               
               Conread position:1-493
               
               
               Cow position:chrX:13826920-13826429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:1-494
               
               
               Cow position:chrX:29045148-29044654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-562
               
               
               Cow position:chrX:25325307-25324742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 204

               
               
               Conread position:1-594
               
               
               Cow position:chrX:29045316-29044719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:1-636
               
               
               Cow position:chrX:25309750-25310393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:3-582
               
               
               Cow position:chrX:25310005-25310586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 90

               
               
               Conread position:3-596
               
               
               Cow position:chrX:25309920-25310518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 189

               
               
               Conread position:6-573
               
               
               Cow position:chrX:25325049-25324480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 498

               
               
               Conread position:8-573
               
               
               Cow position:chrX:25324794-25324230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):505, 19

               
               
               Conread position:8-594
               
               
               Cow position:chrX:29045706-29045139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:373
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):168, 13

               
               
               Conread position:8-636
               
               
               Cow position:chrX:25325383-25324748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 88

               
               
               Conread position:11-590
               
               
               Cow position:chrX:25325211-25324630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:14-562
               
               
               Cow position:chrX:25325124-25324574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:15-574
               
               
               Cow position:chrX:29045217-29044656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 100

               
               
               Conread position:17-569
               
               
               Cow position:chrX:25324870-25324316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:20-594
               
               
               Cow position:chrX:25324951-25324374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):494, 550

               
               
               Conread position:20-636
               
               
               Cow position:chrX:25325539-25324916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 99

               
               
               Conread position:20-636
               
               
               Cow position:chrX:25325707-25325084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 248

               
               
               Conread position:25-474
               
               
               Cow position:chrX:29045858-29045409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:26-512
               
               
               Cow position:chrX:12627576-12628061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:310
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:35-493
               
               
               Cow position:chrX:13826717-13826259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 79

               
               
               Conread position:35-594
               
               
               Cow position:chrX:12627418-12627978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:340
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 60

               
               
               Conread position:35-594
               
               
               Cow position:chrX:25309701-25310263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:35-636
               
               
               Cow position:chrX:25325776-25325168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 85

               
               
               Conread position:65-517
               
               
               Cow position:chrX:13826939-13826487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:77-510
               
               
               Cow position:chrX:25309659-25310092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:86-573
               
               
               Cow position:chrX:25325893-25325404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):88, 95

               
               
               Conread position:131-502
               
               
               Cow position:chrX:14181315-14180944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):351, 341

               
               
               Conread position:191-562
               
               
               Cow position:chrX:12627322-12627694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:202-594
               
               
               Cow position:chrX:25309700-25310095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 145

               
               
               Conread position:204-636
               
               
               Cow position:chrX:29045361-29044925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:209-591
               
               
               Cow position:chrX:29045758-29045373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:213-605
               
               
               Cow position:chrX:29045838-29045442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:223-508
               
               
               Cow position:chrX:13826949-13826664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0
Conread position:	1-375
Cow position:	chr10:9010210-9009835 (view UCSC Genome Browser custom track)
Alignm length:	380
Alignm identity:	236
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	12, 28
Conread position:	1-508
Cow position:	chr10:9010378-9009870 (view UCSC Genome Browser custom track)
Alignm length:	513
Alignm identity:	328
Alignm E-value:	0
Alignm gaps (pig, cow):	19, 143
Conread position:	1-594
Cow position:	chr10:9010546-9009949 (view UCSC Genome Browser custom track)
Alignm length:	603
Alignm identity:	375
Alignm E-value:	0
Alignm gaps (pig, cow):	18, 119
Conread position:	16-522
Cow position:	chr10:8996886-8996381 (view UCSC Genome Browser custom track)
Alignm length:	507
Alignm identity:	332
Alignm E-value:	0
Alignm gaps (pig, cow):	488, 0
Conread position:	19-517
Cow position:	chr10:8996547-8996050 (view UCSC Genome Browser custom track)
Alignm length:	501
Alignm identity:	343
Alignm E-value:	0
Alignm gaps (pig, cow):	185, 181
Conread position:	20-397
Cow position:	chr10:8996378-8996001 (view UCSC Genome Browser custom track)
Alignm length:	378
Alignm identity:	248
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	20-442
Cow position:	chr10:9010274-9009852 (view UCSC Genome Browser custom track)
Alignm length:	427
Alignm identity:	275
Alignm E-value:	3.99931e-42
Alignm gaps (pig, cow):	52, 26
Conread position:	20-636
Cow position:	chr10:8996630-8996007 (view UCSC Genome Browser custom track)
Alignm length:	625
Alignm identity:	409
Alignm E-value:	0
Alignm gaps (pig, cow):	497, 542
Conread position:	21-494
Cow position:	chr10:21939113-21938643 (view UCSC Genome Browser custom track)
Alignm length:	475
Alignm identity:	288
Alignm E-value:	5e-34
Alignm gaps (pig, cow):	49, 41
Conread position:	24-636
Cow position:	chr10:8996710-8996091 (view UCSC Genome Browser custom track)
Alignm length:	622
Alignm identity:	411
Alignm E-value:	0
Alignm gaps (pig, cow):	489, 516
Conread position:	35-389
Cow position:	chr10:9031310-9031664 (view UCSC Genome Browser custom track)
Alignm length:	358
Alignm identity:	199
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	32, 57
Conread position:	35-512
Cow position:	chr10:8996783-8996306 (view UCSC Genome Browser custom track)
Alignm length:	478
Alignm identity:	320
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	40-422
Cow position:	chr10:9031231-9031613 (view UCSC Genome Browser custom track)
Alignm length:	383
Alignm identity:	258
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	44-508
Cow position:	chr10:21939174-21938713 (view UCSC Genome Browser custom track)
Alignm length:	467
Alignm identity:	294
Alignm E-value:	3.99931e-42
Alignm gaps (pig, cow):	67, 76
Conread position:	98-600
Cow position:	chr10:8996888-8996382 (view UCSC Genome Browser custom track)
Alignm length:	509
Alignm identity:	327
Alignm E-value:	0
Alignm gaps (pig, cow):	12, 21
Conread position:	119-512
Cow position:	chr10:9010511-9010118 (view UCSC Genome Browser custom track)
Alignm length:	396
Alignm identity:	269
Alignm E-value:	0
Alignm gaps (pig, cow):	71, 77
Conread position:	124-560
Cow position:	chr10:9031231-9031667 (view UCSC Genome Browser custom track)
Alignm length:	440
Alignm identity:	259
Alignm E-value:	0
Alignm gaps (pig, cow):	52, 66
Conread position:	138-512
Cow position:	chr10:21939164-21938790 (view UCSC Genome Browser custom track)
Alignm length:	378
Alignm identity:	234
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	37, 52
Conread position:	163-593
Cow position:	chr10:21939223-21938789 (view UCSC Genome Browser custom track)
Alignm length:	437
Alignm identity:	263
Alignm E-value:	7e-26
Alignm gaps (pig, cow):	194, 185
Conread position:	164-555
Cow position:	chr10:9010550-9010156 (view UCSC Genome Browser custom track)
Alignm length:	397
Alignm identity:	254
Alignm E-value:	3e-38
Alignm gaps (pig, cow):	319, 303