Cow genome map
| Conread name: | Ss1.1-rhlv28b_c5.5 |
| Conread position: | 1168-1331 |
| Cow position: | chr1:28645495-28645658 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-228 |
| Cow position: | chr10:13737804-13737993 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-228 |
| Cow position: | chr10:13722780-13722597 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-394 |
| Cow position: | chr10:13722422-13722255 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-394 |
| Cow position: | chr10:13738168-13738335 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-520 |
| Cow position: | chr10:13722130-13722004 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 119 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-520 |
| Cow position: | chr10:13738460-13738586 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-800 |
| Cow position: | chr10:13740141-13740423 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-833 |
| Cow position: | chr10:13721447-13721131 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 827-1032 |
| Cow position: | chr10:13720912-13720707 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 827-1032 |
| Cow position: | chr10:13740760-13740965 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1025-1159 |
| Cow position: | chr10:13720593-13720459 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 130 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1031-1159 |
| Cow position: | chr10:13741968-13742096 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1159-1434 |
| Cow position: | chr10:13720368-13720093 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1159-1434 |
| Cow position: | chr10:13742312-13742587 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1431-1531 |
| Cow position: | chr10:13719189-13719089 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1431-1531 |
| Cow position: | chr10:13743693-13743793 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1530-1666 |
| Cow position: | chr10:13718990-13718854 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 132 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1530-1666 |
| Cow position: | chr10:13744437-13744573 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 132 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1663-1797 |
| Cow position: | chr10:13718330-13718195 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 123 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 39-394 |
| Cow position: | chr13:46549859-46549503 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 637-1032 |
| Cow position: | chr13:46548539-46548144 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 170 |
| Conread position: | 1018-1159 |
| Cow position: | chr13:46548078-46547938 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1159-1332 |
| Cow position: | chr13:46547854-46547680 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 145 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 1530-1653 |
| Cow position: | chr13:46546927-46546804 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-228 |
| Cow position: | chr19:22475914-22475728 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-228 |
| Cow position: | chr19:22523027-22522841 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 151 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-228 |
| Cow position: | chr19:2418178-2417995 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-228 |
| Cow position: | chr19:2444177-2443994 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-235 |
| Cow position: | chr19:22706962-22706772 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-392 |
| Cow position: | chr19:2417719-2417554 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-393 |
| Cow position: | chr19:2443914-2443748 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-393 |
| Cow position: | chr19:22475643-22475477 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-393 |
| Cow position: | chr19:22522756-22522590 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-393 |
| Cow position: | chr19:22706204-22706038 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-791 |
| Cow position: | chr19:22522100-22521827 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-829 |
| Cow position: | chr19:2416942-2416631 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-829 |
| Cow position: | chr19:2443358-2443047 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-829 |
| Cow position: | chr19:22474114-22473803 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-829 |
| Cow position: | chr19:22705178-22704867 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 827-1032 |
| Cow position: | chr19:2416547-2416342 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 827-1032 |
| Cow position: | chr19:2442963-2442758 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 827-1032 |
| Cow position: | chr19:22521153-22520948 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 827-1032 |
| Cow position: | chr19:22704753-22704548 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 827-1046 |
| Cow position: | chr19:22473168-22472950 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 1017-1157 |
| Cow position: | chr19:22704489-22704349 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1030-1159 |
| Cow position: | chr19:22471801-22471672 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1159-1331 |
| Cow position: | chr19:22703524-22703352 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1159-1332 |
| Cow position: | chr19:2415797-2415624 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1159-1332 |
| Cow position: | chr19:2442008-2441835 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1159-1332 |
| Cow position: | chr19:22471587-22471414 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1159-1335 |
| Cow position: | chr19:22519481-22519305 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1433-1529 |
| Cow position: | chr19:22702997-22702901 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1530-1664 |
| Cow position: | chr19:22469163-22469029 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1530-1681 |
| Cow position: | chr19:2440162-2440011 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1530-1682 |
| Cow position: | chr19:2413076-2412924 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1530-1682 |
| Cow position: | chr19:22517854-22517702 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |