Cow genome map
| Conread name: | Ss1.1-risp35_n19.5 |
| Conread position: | 120-415 |
| Cow position: | chr1:44684862-44684574 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 281-504 |
| Cow position: | chr1:40071810-40071585 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 169, 30 |
| Conread position: | 116-377 |
| Cow position: | chr10:2171879-2172147 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 129-480 |
| Cow position: | chr10:5482069-5482424 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 189-497 |
| Cow position: | chr10:23351620-23351329 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 107-426 |
| Cow position: | chr11:42557958-42557649 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 168, 12 |
| Conread position: | 289-503 |
| Cow position: | chr11:10818714-10818500 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 126-482 |
| Cow position: | chr13:6076933-6077294 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 297-493 |
| Cow position: | chr14:14876769-14876572 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 120-457 |
| Cow position: | chr15:7291258-7290924 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 263-485 |
| Cow position: | chr15:15595920-15596144 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 134, 10 |
| Conread position: | 156-383 |
| Cow position: | chr16:15982263-15982039 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 187-434 |
| Cow position: | chr16:13402247-13402491 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 223-505 |
| Cow position: | chr16:31367558-31367842 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 129-487 |
| Cow position: | chr17:9857941-9857567 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 218-468 |
| Cow position: | chr17:32023738-32023985 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 1-303 |
| Cow position: | chr18:40077011-40077306 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 39 |
| Conread position: | 189-485 |
| Cow position: | chr18:39459886-39459587 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 126 |
| Conread position: | 299-496 |
| Cow position: | chr18:40077324-40077521 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 96 |
| Conread position: | 190-412 |
| Cow position: | chr19:20521972-20521751 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 202, 102 |
| Conread position: | 194-474 |
| Cow position: | chr19:9081017-9081291 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 78, 118 |
| Conread position: | 115-485 |
| Cow position: | chr2:15125067-15124708 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 116-479 |
| Cow position: | chr2:29756571-29756921 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 128-435 |
| Cow position: | chr2:15233490-15233799 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 116-505 |
| Cow position: | chr20:10723402-10723787 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 163-505 |
| Cow position: | chr20:7550729-7551080 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 117-505 |
| Cow position: | chr21:10759303-10758904 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 119-456 |
| Cow position: | chr21:15519379-15519714 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 298-501 |
| Cow position: | chr22:27518961-27519161 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 149, 11 |
| Conread position: | 120-460 |
| Cow position: | chr23:33595281-33594957 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 127-438 |
| Cow position: | chr25:27024269-27023959 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 289-482 |
| Cow position: | chr25:4221041-4221231 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 148, 20 |
| Conread position: | 162-445 |
| Cow position: | chr26:16606548-16606258 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 232 |
| Conread position: | 163-454 |
| Cow position: | chr26:9223050-9223347 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 169 |
| Conread position: | 127-487 |
| Cow position: | chr28:4579714-4580088 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 171-487 |
| Cow position: | chr3:42119705-42120017 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 6 |
| Conread position: | 189-487 |
| Cow position: | chr3:55323355-55323663 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 115-503 |
| Cow position: | chr5:18690071-18689685 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 45 |
| Conread position: | 165-500 |
| Cow position: | chr5:7070722-7070400 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 131-514 |
| Cow position: | chr7:46926558-46926188 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 171-450 |
| Cow position: | chr7:26379510-26379229 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 6, 147 |
| Conread position: | 119-504 |
| Cow position: | chr8:33034381-33034013 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 127-505 |
| Cow position: | chr9:8438194-8437800 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 226-445 |
| Cow position: | chr9:28732576-28732357 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 162 |
| Conread position: | 228-473 |
| Cow position: | chr9:24246344-24246106 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 119-497 |
| Cow position: | chrX:21860951-21860570 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 199-504 |
| Cow position: | chrX:36719613-36719933 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 194 |