Cow genome map
| Conread name: | Ss1.1-rjej40b_g8.5.5 |
| Conread position: | 674-849 |
| Cow position: | chr1:31909987-31909816 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 773-1042 |
| Cow position: | chr1:49117315-49117051 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 164 |
| Conread position: | 517-1042 |
| Cow position: | chr10:45498202-45497677 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 27 |
| Conread position: | 517-1050 |
| Cow position: | chr10:21375169-21374640 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 0 |
| Conread position: | 517-1044 |
| Cow position: | chr11:27698309-27698813 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 61 |
| Conread position: | 517-1060 |
| Cow position: | chr11:15572855-15572322 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 498-996 |
| Cow position: | chr13:12608210-12608709 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 130 |
| Conread position: | 533-1018 |
| Cow position: | chr13:42852885-42853357 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 625-1012 |
| Cow position: | chr13:5011212-5010835 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 517-1067 |
| Cow position: | chr14:40215552-40215002 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 524-989 |
| Cow position: | chr14:3876080-3876523 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 318 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 147, 27 |
| Conread position: | 819-1017 |
| Cow position: | chr14:4814705-4814901 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 500-869 |
| Cow position: | chr15:16479503-16479879 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 507-976 |
| Cow position: | chr15:25699157-25698694 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 517-1015 |
| Cow position: | chr15:31878278-31878784 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 407 |
| Conread position: | 853-1036 |
| Cow position: | chr15:16480246-16480429 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-223 |
| Cow position: | chr19:13686888-13687111 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 220 |
| Conread position: | 271-724 |
| Cow position: | chr19:13687130-13687569 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 517-1087 |
| Cow position: | chr19:8228252-8228803 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 725-901 |
| Cow position: | chr19:13688752-13688928 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 898-970 |
| Cow position: | chr19:13689329-13689401 (view UCSC Genome Browser custom track) |
| Alignm length: | 73 |
| Alignm identity: | 71 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 490-956 |
| Cow position: | chr2:73625046-73624604 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 660-1041 |
| Cow position: | chr2:76599907-76600290 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 123 |
| Conread position: | 945-1042 |
| Cow position: | chr2:73624328-73624231 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-1054 |
| Cow position: | chr20:34867530-34867011 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 66 |
| Conread position: | 517-991 |
| Cow position: | chr21:12762349-12761901 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 516-744 |
| Cow position: | chr22:23417068-23416841 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 538-1011 |
| Cow position: | chr22:4376940-4377412 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 190 |
| Conread position: | 771-982 |
| Cow position: | chr22:23416580-23416381 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 517-991 |
| Cow position: | chr23:34782750-34782284 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 530-1051 |
| Cow position: | chr23:15602399-15601879 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 97 |
| Conread position: | 578-978 |
| Cow position: | chr24:661885-662269 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 870-994 |
| Cow position: | chr24:43884065-43883941 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-993 |
| Cow position: | chr25:5635155-5634680 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 111 |
| Conread position: | 524-981 |
| Cow position: | chr25:25907243-25907666 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 713-1015 |
| Cow position: | chr25:10725062-10725363 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 199 |
| Conread position: | 517-1044 |
| Cow position: | chr29:38915436-38914912 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 519-1063 |
| Cow position: | chr29:39258926-39259446 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 911-994 |
| Cow position: | chr29:36033213-36033130 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 79 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-1020 |
| Cow position: | chr3:10451233-10450739 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 121 |
| Conread position: | 517-1041 |
| Cow position: | chr3:39005497-39004972 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 518-991 |
| Cow position: | chr3:84855423-84854965 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 517-1043 |
| Cow position: | chr4:23037563-23038087 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 517-1066 |
| Cow position: | chr5:70058363-70058910 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 198 |
| Conread position: | 521-1016 |
| Cow position: | chr5:69940160-69940643 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 566-1067 |
| Cow position: | chr5:28448616-28449111 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 142 |
| Conread position: | 735-856 |
| Cow position: | chr5:41159161-41159279 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 843-1068 |
| Cow position: | chr5:41161141-41161364 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 533-1070 |
| Cow position: | chr6:19936314-19935819 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 425, 95 |
| Conread position: | 517-712 |
| Cow position: | chr7:45588160-45587964 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 104 |
| Conread position: | 517-1051 |
| Cow position: | chr7:8798905-8798386 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 209 |
| Conread position: | 517-1076 |
| Cow position: | chr7:26845651-26846207 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 197 |
| Conread position: | 865-1017 |
| Cow position: | chr7:46883821-46883668 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 487-1018 |
| Cow position: | chr8:30090205-30089692 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 517-1060 |
| Cow position: | chr8:51909220-51909760 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 363 |
| Conread position: | 517-1044 |
| Cow position: | chr9:20047516-20046989 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 517-1049 |
| Cow position: | chr9:23430099-23430621 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 517-1046 |
| Cow position: | chrX:2605134-2605674 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 524 |
| Conread position: | 517-1062 |
| Cow position: | chrX:20992919-20993464 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |