Cow genome map
| Conread name: | Ss1.1-rlin24_p17.5 |
| Conread position: | 1015-1122 |
| Cow position: | chr10:31075065-31074957 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1015-1125 |
| Cow position: | chr10:31167971-31167861 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 1015-1183 |
| Cow position: | chr10:52445169-52445012 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1021-1178 |
| Cow position: | chr11:63680235-63680398 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 1021-1251 |
| Cow position: | chr11:39240595-39240351 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 112, 196 |
| Conread position: | 1030-1245 |
| Cow position: | chr11:60300521-60300752 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1034-1245 |
| Cow position: | chr11:10368495-10368269 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 99, 187 |
| Conread position: | 1015-1169 |
| Cow position: | chr12:4542337-4542175 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 1029-1163 |
| Cow position: | chr14:29173251-29173392 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1034-1238 |
| Cow position: | chr14:35117663-35117879 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 134 |
| Conread position: | 1046-1245 |
| Cow position: | chr14:12497644-12497451 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 24 |
| Conread position: | 1055-1246 |
| Cow position: | chr14:40009544-40009746 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 68, 165 |
| Conread position: | 1042-1245 |
| Cow position: | chr15:45293288-45293075 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 87, 136 |
| Conread position: | 1012-1163 |
| Cow position: | chr16:19039471-19039315 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 1015-1245 |
| Cow position: | chr16:3161846-3162075 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 173, 74 |
| Conread position: | 1019-1245 |
| Cow position: | chr16:40441258-40441020 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 189 |
| Conread position: | 1015-1184 |
| Cow position: | chr17:31834207-31834384 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1015-1177 |
| Cow position: | chr18:43792357-43792521 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 1021-1249 |
| Cow position: | chr19:30142636-30142417 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 1021-1167 |
| Cow position: | chr2:55606539-55606687 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 1023-1245 |
| Cow position: | chr2:72413979-72413753 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 114, 44 |
| Conread position: | 1024-1127 |
| Cow position: | chr2:76134244-76134140 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-246 |
| Cow position: | chr20:21427226-21426972 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 231-487 |
| Cow position: | chr20:21417498-21417242 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 482-607 |
| Cow position: | chr20:21416054-21415929 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 627-788 |
| Cow position: | chr20:21413541-21413380 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 794-1017 |
| Cow position: | chr20:21404525-21404302 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1036-1185 |
| Cow position: | chr20:21384929-21384777 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 1075-1245 |
| Cow position: | chr21:41553009-41552838 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 1015-1244 |
| Cow position: | chr25:1463934-1464173 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 1021-1178 |
| Cow position: | chr25:18497565-18497405 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 61 |
| Conread position: | 1027-1119 |
| Cow position: | chr26:19174257-19174165 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1015-1245 |
| Cow position: | chr27:5542760-5542997 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 112 |
| Conread position: | 1020-1245 |
| Cow position: | chr29:38020024-38019785 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 109, 190 |
| Conread position: | 1034-1184 |
| Cow position: | chr29:1764924-1764774 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 1012-1241 |
| Cow position: | chr3:15051041-15050807 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 1021-1244 |
| Cow position: | chr3:2671151-2671372 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 102, 137 |
| Conread position: | 1015-1245 |
| Cow position: | chr4:35045130-35045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 109, 194 |
| Conread position: | 1015-1246 |
| Cow position: | chr4:23143119-23142900 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 1015-1246 |
| Cow position: | chr4:43500449-43500206 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 1006-1245 |
| Cow position: | chr5:47434364-47434602 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 124 |
| Conread position: | 1015-1126 |
| Cow position: | chr6:26235990-26235879 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1032-1125 |
| Cow position: | chr6:8812412-8812505 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1015-1245 |
| Cow position: | chr8:44482955-44482713 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 1013-1245 |
| Cow position: | chr9:58556359-58556598 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 116 |
| Conread position: | 1013-1242 |
| Cow position: | chrX:41415332-41415569 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 93, 70 |
| Conread position: | 1015-1132 |
| Cow position: | chrX:38746711-38746831 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1018-1127 |
| Cow position: | chrX:615769-615664 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1039-1183 |
| Cow position: | chrX:7467790-7467940 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 53 |