Cow genome map
| Conread name: | Ss1.1-rlnt26c_g16.5.5 |
| Conread position: | 86-1220 |
| Cow position: | chr1:93219663-93218519 (view UCSC Genome Browser custom track) |
| Alignm length: | 1152 |
| Alignm identity: | 978 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 251 |
| Conread position: | 289-1210 |
| Cow position: | chr1:63254709-63255624 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 403 |
| Conread position: | 206-533 |
| Cow position: | chr10:19086812-19086485 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 529-699 |
| Cow position: | chr10:19085776-19085606 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 694-887 |
| Cow position: | chr10:19085483-19085290 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1068 |
| Cow position: | chr10:19084515-19084328 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1211 |
| Cow position: | chr10:19083781-19083637 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 128 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 335-447 |
| Cow position: | chr11:9335607-9335719 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 532-692 |
| Cow position: | chr11:9337777-9337937 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 694-887 |
| Cow position: | chr11:9338702-9338895 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1068 |
| Cow position: | chr11:9340532-9340719 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1211 |
| Cow position: | chr11:9343069-9343213 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-1210 |
| Cow position: | chr16:36112541-36111440 (view UCSC Genome Browser custom track) |
| Alignm length: | 1111 |
| Alignm identity: | 703 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 445-896 |
| Cow position: | chr19:45155242-45154792 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 0 |
| Conread position: | 778-1166 |
| Cow position: | chr19:26728308-26727931 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 886-1068 |
| Cow position: | chr19:45154694-45154512 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1944 |
| Cow position: | chr19:45154425-45153551 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 800 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 407 |
| Conread position: | 1419-1613 |
| Cow position: | chr19:26727391-26727201 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 137, 54 |
| Conread position: | 1601-1952 |
| Cow position: | chr19:26727051-26726703 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 158 |
| Conread position: | 304-1184 |
| Cow position: | chr22:38195947-38195100 (view UCSC Genome Browser custom track) |
| Alignm length: | 886 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 295 |
| Conread position: | 84-363 |
| Cow position: | chr24:27075918-27076197 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 260, 85 |
| Conread position: | 20-451 |
| Cow position: | chr25:37061104-37061534 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 182 |
| Conread position: | 445-887 |
| Cow position: | chr25:37061968-37062410 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 206-342 |
| Cow position: | chr26:5420326-5420189 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 335-447 |
| Cow position: | chr26:5417264-5417152 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 511-776 |
| Cow position: | chr26:14057000-14057269 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 132, 150 |
| Conread position: | 527-699 |
| Cow position: | chr26:5414392-5414220 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 691-894 |
| Cow position: | chr26:5412437-5412234 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 880-1068 |
| Cow position: | chr26:5410972-5410785 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 1067-1211 |
| Cow position: | chr26:5408175-5408031 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 131 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-208 |
| Cow position: | chr28:456087-456207 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-533 |
| Cow position: | chr28:456309-456637 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 532-702 |
| Cow position: | chr28:456739-456909 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 141 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 689-887 |
| Cow position: | chr28:456997-457195 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 816-1083 |
| Cow position: | chr28:457218-457488 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1067-1215 |
| Cow position: | chr28:457556-457704 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 138 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-1239 |
| Cow position: | chr3:54413015-54414168 (view UCSC Genome Browser custom track) |
| Alignm length: | 1155 |
| Alignm identity: | 954 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1128, 1124 |
| Conread position: | 95-1210 |
| Cow position: | chr7:14383840-14382734 (view UCSC Genome Browser custom track) |
| Alignm length: | 1129 |
| Alignm identity: | 693 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 116 |