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Cow genome map

           
Conread name:
           
Ss1.1-rmas924b_k4.5
        

               
Conread position:
               
12-592
               

               
Cow position:
               
chr1:20039147-20039727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
659-990
               

               
Cow position:
               
chr1:86110851-86110517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
669-946
               

               
Cow position:
               
chr1:71079069-71078777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
669-968
               

               
Cow position:
               
chr1:56225355-56225673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 280
               

               
Conread position:
               
669-969
               

               
Cow position:
               
chr1:8129078-8128770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
669-970
               

               
Cow position:
               
chr1:61884808-61885121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
669-971
               

               
Cow position:
               
chr1:56618762-56618444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
669-971
               

               
Cow position:
               
chr1:91023579-91023258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
39, 279
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr1:68817910-68817589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 276
               

               
Conread position:
               
669-985
               

               
Cow position:
               
chr1:41696947-41697277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
669-991
               

               
Cow position:
               
chr1:41138243-41137916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
672-977
               

               
Cow position:
               
chr1:25383554-25383885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 281
               

               
Conread position:
               
677-971
               

               
Cow position:
               
chr1:20104165-20104476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 267
               

               
Conread position:
               
677-993
               

               
Cow position:
               
chr1:72304474-72304173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
678-943
               

               
Cow position:
               
chr1:53397889-53398155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
678-990
               

               
Cow position:
               
chr1:75744758-75745089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
679-988
               

               
Cow position:
               
chr1:81290406-81290729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 150
               

               
Conread position:
               
695-972
               

               
Cow position:
               
chr1:43505444-43505735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
713-972
               

               
Cow position:
               
chr1:46143526-46143256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 172
               

               
Conread position:
               
719-970
               

               
Cow position:
               
chr1:5597267-5597003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 221
               

               
Conread position:
               
659-984
               

               
Cow position:
               
chr10:14947111-14947445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
669-983
               

               
Cow position:
               
chr10:21657282-21657604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 167
               

               
Conread position:
               
669-993
               

               
Cow position:
               
chr10:45370913-45371259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 280
               

               
Conread position:
               
677-968
               

               
Cow position:
               
chr10:3275860-3276145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
192, 72
               

               
Conread position:
               
678-954
               

               
Cow position:
               
chr10:37068545-37068258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 183
               

               
Conread position:
               
678-969
               

               
Cow position:
               
chr10:62353331-62353635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
678-985
               

               
Cow position:
               
chr10:2613234-2613560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 268
               

               
Conread position:
               
678-989
               

               
Cow position:
               
chr10:46327556-46327888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
678-996
               

               
Cow position:
               
chr10:37529398-37529072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 181
               

               
Conread position:
               
679-1012
               

               
Cow position:
               
chr10:9576169-9575830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
695-934
               

               
Cow position:
               
chr10:21422270-21422019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
695-969
               

               
Cow position:
               
chr10:35731633-35731350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
76, 8
               

               
Conread position:
               
700-970
               

               
Cow position:
               
chr10:61510047-61509768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
714-954
               

               
Cow position:
               
chr10:23346396-23346144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
669-882
               

               
Cow position:
               
chr11:50778238-50778461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
669-989
               

               
Cow position:
               
chr11:55052751-55053071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
110, 29
               

               
Conread position:
               
669-990
               

               
Cow position:
               
chr11:2907654-2907327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
679-955
               

               
Cow position:
               
chr11:28993857-28993576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
680-988
               

               
Cow position:
               
chr11:64334733-64335035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
681-968
               

               
Cow position:
               
chr11:27248369-27248674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
695-973
               

               
Cow position:
               
chr11:30493894-30494183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
662-988
               

               
Cow position:
               
chr12:15089351-15089694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 190
               

               
Conread position:
               
669-995
               

               
Cow position:
               
chr12:18123530-18123857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
109, 43
               

               
Conread position:
               
677-981
               

               
Cow position:
               
chr12:20777071-20776754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
678-934
               

               
Cow position:
               
chr12:11056733-11057000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
680-985
               

               
Cow position:
               
chr12:25561227-25561544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
686-970
               

               
Cow position:
               
chr12:7902923-7902640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
713-968
               

               
Cow position:
               
chr12:18583101-18582836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 230
               

               
Conread position:
               
742-1032
               

               
Cow position:
               
chr12:12232813-12233111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
669-953
               

               
Cow position:
               
chr13:24369683-24369385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 177
               

               
Conread position:
               
669-968
               

               
Cow position:
               
chr13:21235584-21235883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
669-1007
               

               
Cow position:
               
chr13:20784691-20784339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
672-934
               

               
Cow position:
               
chr13:20666287-20666567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
672-964
               

               
Cow position:
               
chr13:19279192-19278884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
673-957
               

               
Cow position:
               
chr13:20288429-20288134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
673-987
               

               
Cow position:
               
chr13:14063423-14063754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 189
               

               
Conread position:
               
678-989
               

               
Cow position:
               
chr13:17569006-17569333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
30, 275
               

               
Conread position:
               
678-993
               

               
Cow position:
               
chr13:57769917-57770223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
679-975
               

               
Cow position:
               
chr13:25817615-25817307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
695-970
               

               
Cow position:
               
chr13:20473610-20473892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
699-975
               

               
Cow position:
               
chr13:20868687-20868966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
745-987
               

               
Cow position:
               
chr13:56535470-56535233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
668-954
               

               
Cow position:
               
chr14:33791347-33791048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
659-989
               

               
Cow position:
               
chr15:16261529-16261197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 6
               

               
Conread position:
               
669-868
               

               
Cow position:
               
chr15:16307619-16307415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
669-979
               

               
Cow position:
               
chr15:26079157-26079471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
669-984
               

               
Cow position:
               
chr15:22532444-22532125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
700-954
               

               
Cow position:
               
chr15:24967960-24967703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
780-992
               

               
Cow position:
               
chr15:46283835-46284056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
796-965
               

               
Cow position:
               
chr15:36422677-36422509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
669-977
               

               
Cow position:
               
chr16:48398369-48398043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
669-988
               

               
Cow position:
               
chr16:56231709-56232031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
680-952
               

               
Cow position:
               
chr16:54579063-54579351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
680-966
               

               
Cow position:
               
chr16:13689558-13689863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 265
               

               
Conread position:
               
695-954
               

               
Cow position:
               
chr16:26649716-26649447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
695-989
               

               
Cow position:
               
chr16:8737978-8738288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
700-949
               

               
Cow position:
               
chr16:16570832-16571083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
700-972
               

               
Cow position:
               
chr16:40514563-40514287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
720-991
               

               
Cow position:
               
chr16:11584460-11584184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 214
               

               
Conread position:
               
669-966
               

               
Cow position:
               
chr17:33933825-33933508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 236
               

               
Conread position:
               
669-971
               

               
Cow position:
               
chr17:908668-908985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
678-982
               

               
Cow position:
               
chr17:12536536-12536215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
24, 205
               

               
Conread position:
               
695-952
               

               
Cow position:
               
chr17:20022562-20022288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
695-973
               

               
Cow position:
               
chr17:34791112-34790818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
699-994
               

               
Cow position:
               
chr17:21039521-21039823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
719-984
               

               
Cow position:
               
chr17:12959082-12959358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 159
               

               
Conread position:
               
659-991
               

               
Cow position:
               
chr18:55505247-55505593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
669-970
               

               
Cow position:
               
chr18:44262477-44262793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
6, 219
               

               
Conread position:
               
669-976
               

               
Cow position:
               
chr18:8171236-8170915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
672-997
               

               
Cow position:
               
chr18:48713402-48713740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 214
               

               
Conread position:
               
678-967
               

               
Cow position:
               
chr18:18592334-18592631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
680-970
               

               
Cow position:
               
chr18:17391116-17390820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
695-955
               

               
Cow position:
               
chr18:25006608-25006351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
695-991
               

               
Cow position:
               
chr18:1571356-1571044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
712-972
               

               
Cow position:
               
chr18:43797057-43796787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
669-978
               

               
Cow position:
               
chr19:34955822-34955515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
39, 186
               

               
Conread position:
               
673-971
               

               
Cow position:
               
chr19:24005542-24005848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
677-946
               

               
Cow position:
               
chr19:23394665-23394953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
678-972
               

               
Cow position:
               
chr19:7668579-7668889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 145
               

               
Conread position:
               
692-988
               

               
Cow position:
               
chr19:23784518-23784218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 59
               

               
Conread position:
               
695-972
               

               
Cow position:
               
chr19:14632133-14631847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
695-985
               

               
Cow position:
               
chr19:43750-44054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 8
               

               
Conread position:
               
697-966
               

               
Cow position:
               
chr19:18054342-18054072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
708-972
               

               
Cow position:
               
chr19:33575437-33575713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 43
               

               
Conread position:
               
713-970
               

               
Cow position:
               
chr19:34420332-34420603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 226
               

               
Conread position:
               
641-1004
               

               
Cow position:
               
chr2:45642632-45642254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
668-970
               

               
Cow position:
               
chr2:46189216-46188893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
669-957
               

               
Cow position:
               
chr2:45542512-45542211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
669-967
               

               
Cow position:
               
chr2:17114849-17114541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
669-967
               

               
Cow position:
               
chr2:22372063-22371754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 56
               

               
Conread position:
               
669-968
               

               
Cow position:
               
chr2:40488699-40489004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
669-992
               

               
Cow position:
               
chr2:24393802-24393467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
669-992
               

               
Cow position:
               
chr2:45499319-45498978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
677-979
               

               
Cow position:
               
chr2:13001697-13002007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
678-949
               

               
Cow position:
               
chr2:44170452-44170740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 180
               

               
Conread position:
               
678-967
               

               
Cow position:
               
chr2:45619503-45619196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 267
               

               
Conread position:
               
678-989
               

               
Cow position:
               
chr2:18997617-18997938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
679-966
               

               
Cow position:
               
chr2:33554277-33553977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
685-970
               

               
Cow position:
               
chr2:13684602-13684894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
695-960
               

               
Cow position:
               
chr2:69350654-69350374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
695-970
               

               
Cow position:
               
chr2:44051224-44051512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
695-980
               

               
Cow position:
               
chr2:46120728-46120431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
700-993
               

               
Cow position:
               
chr2:46164571-46164277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
708-970
               

               
Cow position:
               
chr2:50449980-50449706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
713-990
               

               
Cow position:
               
chr2:45596911-45597203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 228
               

               
Conread position:
               
719-983
               

               
Cow position:
               
chr2:41248504-41248782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 186
               

               
Conread position:
               
722-967
               

               
Cow position:
               
chr2:82116029-82116287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
669-966
               

               
Cow position:
               
chr20:22064997-22065303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 274
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr20:2298852-2298548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
669-973
               

               
Cow position:
               
chr20:27407949-27407646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
677-953
               

               
Cow position:
               
chr20:28605137-28605435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
677-987
               

               
Cow position:
               
chr20:28982632-28982958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
679-972
               

               
Cow position:
               
chr20:22265310-22265016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
695-986
               

               
Cow position:
               
chr20:8307975-8308265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
720-970
               

               
Cow position:
               
chr20:3255024-3255279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 213
               

               
Conread position:
               
669-946
               

               
Cow position:
               
chr21:42135674-42135376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 279
               

               
Conread position:
               
669-971
               

               
Cow position:
               
chr21:44214070-44214380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 158
               

               
Conread position:
               
669-979
               

               
Cow position:
               
chr21:24858261-24858593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
679-1005
               

               
Cow position:
               
chr21:34654032-34654380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
680-989
               

               
Cow position:
               
chr21:742245-742561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 129
               

               
Conread position:
               
695-972
               

               
Cow position:
               
chr21:641563-641853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
700-965
               

               
Cow position:
               
chr21:28030269-28030541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 217
               

               
Conread position:
               
708-971
               

               
Cow position:
               
chr21:802318-802055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
708-1004
               

               
Cow position:
               
chr21:14126276-14126576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 163
               

               
Conread position:
               
788-972
               

               
Cow position:
               
chr21:8506466-8506279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
668-970
               

               
Cow position:
               
chr22:43812541-43812242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
669-949
               

               
Cow position:
               
chr22:44740971-44741249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
669-953
               

               
Cow position:
               
chr22:8877155-8877432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 29
               

               
Conread position:
               
669-969
               

               
Cow position:
               
chr22:43397892-43398198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
669-970
               

               
Cow position:
               
chr22:36433090-36432773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 276
               

               
Conread position:
               
669-971
               

               
Cow position:
               
chr22:17950085-17949776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
672-970
               

               
Cow position:
               
chr22:31646375-31646681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 212
               

               
Conread position:
               
678-972
               

               
Cow position:
               
chr22:11613313-11613628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
679-968
               

               
Cow position:
               
chr22:28370836-28371129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
681-993
               

               
Cow position:
               
chr22:34441741-34441409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
686-972
               

               
Cow position:
               
chr22:17852733-17852436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
694-972
               

               
Cow position:
               
chr22:8357500-8357780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
730-991
               

               
Cow position:
               
chr22:2101003-2100728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 211
               

               
Conread position:
               
659-949
               

               
Cow position:
               
chr23:21452856-21452547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
669-970
               

               
Cow position:
               
chr23:2282290-2281982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 98
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr23:16881278-16880962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
680-967
               

               
Cow position:
               
chr23:24685147-24685443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
695-946
               

               
Cow position:
               
chr23:17486911-17486645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
700-969
               

               
Cow position:
               
chr23:19872755-19872495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
713-963
               

               
Cow position:
               
chr23:22586821-22587078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
796-999
               

               
Cow position:
               
chr23:27849023-27849228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 136
               

               
Conread position:
               
678-986
               

               
Cow position:
               
chr24:17311344-17311031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
680-970
               

               
Cow position:
               
chr24:11887030-11887332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
718-972
               

               
Cow position:
               
chr24:27284731-27285005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 229
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr25:19364181-19363875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 279
               

               
Conread position:
               
677-954
               

               
Cow position:
               
chr25:32453506-32453245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 82
               

               
Conread position:
               
678-965
               

               
Cow position:
               
chr25:7641561-7641259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
74, 183
               

               
Conread position:
               
695-945
               

               
Cow position:
               
chr25:23245091-23244828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
695-970
               

               
Cow position:
               
chr25:26679139-26679428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
700-987
               

               
Cow position:
               
chr25:24572984-24573283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
704-967
               

               
Cow position:
               
chr25:14720665-14720930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 175
               

               
Conread position:
               
647-1000
               

               
Cow position:
               
chr26:647844-647472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
669-953
               

               
Cow position:
               
chr26:13802013-13802311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
678-968
               

               
Cow position:
               
chr26:9535426-9535731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
678-972
               

               
Cow position:
               
chr26:24240584-24240906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 184
               

               
Conread position:
               
705-953
               

               
Cow position:
               
chr26:28423226-28423488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
719-990
               

               
Cow position:
               
chr26:33202116-33201832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
73, 222
               

               
Conread position:
               
720-970
               

               
Cow position:
               
chr26:20291738-20291473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr27:27632536-27632824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 166
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr27:30890361-30890052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 186
               

               
Conread position:
               
669-1002
               

               
Cow position:
               
chr27:17397378-17397730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
701-970
               

               
Cow position:
               
chr27:22547370-22547635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
708-985
               

               
Cow position:
               
chr27:23559999-23560295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
714-986
               

               
Cow position:
               
chr27:22171325-22171040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 227
               

               
Conread position:
               
659-991
               

               
Cow position:
               
chr28:8347609-8347964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 204
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr28:13474188-13474491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 276
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr28:8787427-8787749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 181
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr28:21844847-21845162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 275
               

               
Conread position:
               
669-989
               

               
Cow position:
               
chr28:11884632-11884304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
669-993
               

               
Cow position:
               
chr28:20124671-20125009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
669-996
               

               
Cow position:
               
chr28:11079194-11079536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
32, 152
               

               
Conread position:
               
677-971
               

               
Cow position:
               
chr28:25056866-25057165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 38
               

               
Conread position:
               
679-1008
               

               
Cow position:
               
chr28:3024014-3023673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
695-954
               

               
Cow position:
               
chr28:1099741-1099485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
699-970
               

               
Cow position:
               
chr28:5074588-5074313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 157
               

               
Conread position:
               
719-972
               

               
Cow position:
               
chr28:4013028-4013293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 39
               

               
Conread position:
               
669-1007
               

               
Cow position:
               
chr29:34773853-34773512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 184
               

               
Conread position:
               
669-1013
               

               
Cow position:
               
chr29:22162372-22162019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 220
               

               
Conread position:
               
672-973
               

               
Cow position:
               
chr29:36530751-36531071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
680-1002
               

               
Cow position:
               
chr29:19949198-19949539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
713-966
               

               
Cow position:
               
chr29:36952371-36952114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
713-1009
               

               
Cow position:
               
chr29:20770272-20770582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 230
               

               
Conread position:
               
718-970
               

               
Cow position:
               
chr29:41112941-41112688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
74, 41
               

               
Conread position:
               
669-868
               

               
Cow position:
               
chr3:26874448-26874662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
669-952
               

               
Cow position:
               
chr3:70609485-70609786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 132
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr3:76922804-76922510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 215
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr3:68708145-68707841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr3:68881253-68880950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
669-980
               

               
Cow position:
               
chr3:48362943-48363257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
669-982
               

               
Cow position:
               
chr3:9641424-9641747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
669-992
               

               
Cow position:
               
chr3:50768541-50768878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
672-930
               

               
Cow position:
               
chr3:26681936-26681675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
672-970
               

               
Cow position:
               
chr3:55177889-55177572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 274
               

               
Conread position:
               
677-979
               

               
Cow position:
               
chr3:78077060-78077381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
66, 266
               

               
Conread position:
               
677-991
               

               
Cow position:
               
chr3:2396912-2396590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
679-973
               

               
Cow position:
               
chr3:51402781-51403078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
699-954
               

               
Cow position:
               
chr3:15951019-15950754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
699-1015
               

               
Cow position:
               
chr3:59604737-59605068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
661-946
               

               
Cow position:
               
chr4:19097158-19097462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr4:52832143-52831836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
669-987
               

               
Cow position:
               
chr4:38944384-38944048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
6, 86
               

               
Conread position:
               
669-989
               

               
Cow position:
               
chr4:36290503-36290837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 96
               

               
Conread position:
               
669-998
               

               
Cow position:
               
chr4:54455468-54455126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 306
               

               
Conread position:
               
670-921
               

               
Cow position:
               
chr4:68889681-68889424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 28
               

               
Conread position:
               
676-990
               

               
Cow position:
               
chr4:61897648-61897339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
699-972
               

               
Cow position:
               
chr4:23880751-23880475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 162
               

               
Conread position:
               
719-968
               

               
Cow position:
               
chr4:37991526-37991782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
669-953
               

               
Cow position:
               
chr5:30253649-30253953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr5:30302801-30303095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 215
               

               
Conread position:
               
669-967
               

               
Cow position:
               
chr5:56028619-56028318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
669-969
               

               
Cow position:
               
chr5:7044799-7044477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 280
               

               
Conread position:
               
669-970
               

               
Cow position:
               
chr5:44028393-44028078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr5:57935201-57934887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 217
               

               
Conread position:
               
669-975
               

               
Cow position:
               
chr5:56070764-56071093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 219
               

               
Conread position:
               
669-989
               

               
Cow position:
               
chr5:35826511-35826846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 305
               

               
Conread position:
               
678-971
               

               
Cow position:
               
chr5:21828783-21829095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
679-986
               

               
Cow position:
               
chr5:44446950-44446629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 205
               

               
Conread position:
               
695-987
               

               
Cow position:
               
chr5:59627035-59626726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
702-991
               

               
Cow position:
               
chr5:50943203-50942906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
669-898
               

               
Cow position:
               
chr6:6400873-6401123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr6:49398692-49398402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
669-971
               

               
Cow position:
               
chr6:11192544-11192236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
669-994
               

               
Cow position:
               
chr6:31535645-31535305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
672-957
               

               
Cow position:
               
chr6:19264571-19264271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 273
               

               
Conread position:
               
672-972
               

               
Cow position:
               
chr6:55282362-55282047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 272
               

               
Conread position:
               
678-954
               

               
Cow position:
               
chr6:54132748-54133038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
681-975
               

               
Cow position:
               
chr6:24468457-24468151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
669-952
               

               
Cow position:
               
chr7:8658438-8658741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
39, 68
               

               
Conread position:
               
669-953
               

               
Cow position:
               
chr7:53382125-53382409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
38, 210
               

               
Conread position:
               
669-970
               

               
Cow position:
               
chr7:35275156-35274841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
39, 198
               

               
Conread position:
               
669-971
               

               
Cow position:
               
chr7:15569966-15570283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 273
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr7:22793273-22793583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
26, 211
               

               
Conread position:
               
669-987
               

               
Cow position:
               
chr7:31171027-31170695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 225
               

               
Conread position:
               
669-990
               

               
Cow position:
               
chr7:36996299-36996623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
670-986
               

               
Cow position:
               
chr7:9449725-9449409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
678-970
               

               
Cow position:
               
chr7:37394250-37394543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
678-973
               

               
Cow position:
               
chr7:4764781-4765087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 208
               

               
Conread position:
               
695-989
               

               
Cow position:
               
chr7:60869903-60870188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
8, 68
               

               
Conread position:
               
699-995
               

               
Cow position:
               
chr7:17750882-17750575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 243
               

               
Conread position:
               
742-982
               

               
Cow position:
               
chr7:26871981-26871733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
668-967
               

               
Cow position:
               
chr8:20107892-20107583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
669-969
               

               
Cow position:
               
chr8:10970724-10971048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 282
               

               
Conread position:
               
669-970
               

               
Cow position:
               
chr8:38572381-38572056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
41, 282
               

               
Conread position:
               
669-973
               

               
Cow position:
               
chr8:19717202-19716895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 39
               

               
Conread position:
               
678-954
               

               
Cow position:
               
chr8:46082069-46082362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 264
               

               
Conread position:
               
679-954
               

               
Cow position:
               
chr8:55716660-55716949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
679-989
               

               
Cow position:
               
chr8:17199529-17199196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
700-972
               

               
Cow position:
               
chr8:16957557-16957828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr9:24887346-24887047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
39, 101
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chr9:34957908-34958210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 275
               

               
Conread position:
               
669-969
               

               
Cow position:
               
chr9:34666565-34666279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
669-972
               

               
Cow position:
               
chr9:11299544-11299848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
669-987
               

               
Cow position:
               
chr9:4341023-4341347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
669-1006
               

               
Cow position:
               
chr9:41728404-41728050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
680-984
               

               
Cow position:
               
chr9:18380994-18380678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
682-991
               

               
Cow position:
               
chr9:50606815-50607125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
683-991
               

               
Cow position:
               
chr9:33101008-33101300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 78
               

               
Conread position:
               
695-1005
               

               
Cow position:
               
chr9:40543208-40543527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
719-968
               

               
Cow position:
               
chr9:8628823-8629085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 220
               

               
Conread position:
               
668-972
               

               
Cow position:
               
chrX:29050155-29050476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 277
               

               
Conread position:
               
669-954
               

               
Cow position:
               
chrX:1466070-1466379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 218
               

               
Conread position:
               
669-993
               

               
Cow position:
               
chrX:34837145-34836817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
678-967
               

               
Cow position:
               
chrX:8869486-8869175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 271
               

               
Conread position:
               
678-983
               

               
Cow position:
               
chrX:9201468-9201789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
695-931
               

               
Cow position:
               
chrX:31252358-31252603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
796-983
               

               
Cow position:
               
chrX:27145655-27145844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 133