Cow genome map
| Conread name: | Ss1.1-rnms15_k9.5 |
| Conread position: | 777-961 |
| Cow position: | chr10:37720091-37719903 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 777-973 |
| Cow position: | chr10:6694386-6694579 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 782-973 |
| Cow position: | chr10:8558802-8558612 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 71 |
| Conread position: | 788-973 |
| Cow position: | chr10:28069581-28069768 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 776-932 |
| Cow position: | chr11:83412517-83412361 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 776-962 |
| Cow position: | chr11:54705547-54705730 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 777-973 |
| Cow position: | chr11:23350093-23350286 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 124 |
| Conread position: | 782-967 |
| Cow position: | chr11:15208225-15208038 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 808-967 |
| Cow position: | chr11:84804441-84804283 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 92, 55 |
| Conread position: | 776-973 |
| Cow position: | chr12:10502648-10502449 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 777-939 |
| Cow position: | chr12:39563743-39563908 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 777-985 |
| Cow position: | chr12:4753212-4753420 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 147 |
| Conread position: | 795-947 |
| Cow position: | chr12:14140112-14139960 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 106, 12 |
| Conread position: | 772-967 |
| Cow position: | chr13:38886506-38886310 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 777-939 |
| Cow position: | chr13:596171-596332 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 782-970 |
| Cow position: | chr14:7059284-7059091 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 170 |
| Conread position: | 777-963 |
| Cow position: | chr15:16182841-16183027 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 777-952 |
| Cow position: | chr16:34518155-34517977 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 779-967 |
| Cow position: | chr16:11033305-11033494 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 104 |
| Conread position: | 782-944 |
| Cow position: | chr16:42601809-42601644 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 782-965 |
| Cow position: | chr16:22874346-22874164 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 126 |
| Conread position: | 798-967 |
| Cow position: | chr16:46677546-46677713 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 116 |
| Conread position: | 773-945 |
| Cow position: | chr17:32904610-32904788 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 777-978 |
| Cow position: | chr17:1474294-1474095 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 166 |
| Conread position: | 782-963 |
| Cow position: | chr17:29869180-29869361 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 782-968 |
| Cow position: | chr17:40072609-40072423 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 159 |
| Conread position: | 777-967 |
| Cow position: | chr18:3010720-3010529 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 780-967 |
| Cow position: | chr18:29018222-29018028 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 783-976 |
| Cow position: | chr18:48405206-48405402 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 782-977 |
| Cow position: | chr2:34704950-34704750 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 785-959 |
| Cow position: | chr2:49677575-49677750 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 6, 108 |
| Conread position: | 790-973 |
| Cow position: | chr2:81865393-81865206 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 798-973 |
| Cow position: | chr2:16547362-16547185 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 807-972 |
| Cow position: | chr2:78123854-78123687 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 147 |
| Conread position: | 759-967 |
| Cow position: | chr20:1519410-1519619 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 776-968 |
| Cow position: | chr20:10519280-10519086 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 797-994 |
| Cow position: | chr20:13255295-13255096 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 776-972 |
| Cow position: | chr21:27170312-27170112 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 790-939 |
| Cow position: | chr21:14137000-14136846 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 800-964 |
| Cow position: | chr21:12937713-12937878 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 802-962 |
| Cow position: | chr21:34244925-34244764 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 1-136 |
| Cow position: | chr22:3155833-3155968 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 123 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-275 |
| Cow position: | chr22:3180432-3180524 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 272-1751 |
| Cow position: | chr22:3262073-3263517 (view UCSC Genome Browser custom track) |
| Alignm length: | 1496 |
| Alignm identity: | 1194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 622, 216 |
| Conread position: | 780-973 |
| Cow position: | chr22:10711199-10711004 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 811-964 |
| Cow position: | chr22:23458979-23458830 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 1663-2062 |
| Cow position: | chr22:3263518-3263900 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 23 |
| Conread position: | 772-967 |
| Cow position: | chr23:36023717-36023914 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 138 |
| Conread position: | 784-972 |
| Cow position: | chr23:14549248-14549429 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 792-972 |
| Cow position: | chr23:18360116-18360294 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 777-973 |
| Cow position: | chr24:18601091-18601288 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 146 |
| Conread position: | 760-964 |
| Cow position: | chr25:12499705-12499907 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 777-961 |
| Cow position: | chr25:27214347-27214529 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 88 |
| Conread position: | 776-937 |
| Cow position: | chr26:14162950-14162788 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 817-964 |
| Cow position: | chr26:28386987-28387136 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 777-936 |
| Cow position: | chr27:19707289-19707449 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 777-978 |
| Cow position: | chr28:26306196-26306402 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 789-970 |
| Cow position: | chr28:21876407-21876588 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 123 |
| Conread position: | 795-972 |
| Cow position: | chr28:16101895-16102073 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 806-946 |
| Cow position: | chr29:17771888-17772030 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 776-973 |
| Cow position: | chr3:75593898-75593703 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 777-967 |
| Cow position: | chr3:55991166-55991354 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 771-945 |
| Cow position: | chr5:34564759-34564585 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 779-971 |
| Cow position: | chr5:70294431-70294232 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 777-972 |
| Cow position: | chr6:59583424-59583621 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 769-967 |
| Cow position: | chr7:35633904-35634103 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 781-939 |
| Cow position: | chr7:45185248-45185407 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 782-963 |
| Cow position: | chr7:21029805-21029624 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 798-963 |
| Cow position: | chr7:29411437-29411272 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 117 |
| Conread position: | 813-973 |
| Cow position: | chr7:31130630-31130792 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 782-973 |
| Cow position: | chr8:16510947-16511140 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 84 |
| Conread position: | 782-973 |
| Cow position: | chr8:18353932-18354122 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 133 |
| Conread position: | 825-976 |
| Cow position: | chr9:33392111-33391959 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 763-972 |
| Cow position: | chrX:25028601-25028390 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 776-944 |
| Cow position: | chrX:28783694-28783523 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 790-949 |
| Cow position: | chrX:18885821-18885981 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 0 |