Cow genome map
| Conread name: | Ss1.1-rova013_l2.5 |
| Conread position: | 2-294 |
| Cow position: | chr11:18941954-18941666 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 9-477 |
| Cow position: | chr11:30495951-30495492 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 34-201 |
| Cow position: | chr11:25214510-25214676 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 88-212 |
| Cow position: | chr11:51641408-51641530 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 103, 35 |
| Conread position: | 287-490 |
| Cow position: | chr11:25214676-25214878 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 127, 88 |
| Conread position: | 1-232 |
| Cow position: | chr15:15510507-15510738 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 2-297 |
| Cow position: | chr15:7916860-7917145 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 216-370 |
| Cow position: | chr15:15510752-15510901 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-209 |
| Cow position: | chr16:50999119-50998912 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 102 |
| Conread position: | 11-359 |
| Cow position: | chr16:25142218-25141866 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 43 |
| Conread position: | 333-469 |
| Cow position: | chr18:6465808-6465945 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 2-209 |
| Cow position: | chr19:47879089-47878885 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 156-407 |
| Cow position: | chr19:11368886-11369138 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 113, 37 |
| Conread position: | 2-263 |
| Cow position: | chr2:50134307-50134571 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 2-471 |
| Cow position: | chr21:47569048-47569499 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 87-502 |
| Cow position: | chr21:23905333-23904927 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 6-515 |
| Cow position: | chr23:25872983-25873478 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 57-487 |
| Cow position: | chr23:14946834-14946412 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 62 |
| Conread position: | 2-208 |
| Cow position: | chr24:13875817-13875617 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 16-413 |
| Cow position: | chr24:11258031-11258420 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 57-293 |
| Cow position: | chr24:13875543-13875311 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 57-502 |
| Cow position: | chr24:44114389-44114824 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 64 |
| Conread position: | 11-283 |
| Cow position: | chr25:30453484-30453749 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 16-502 |
| Cow position: | chr25:11074010-11073541 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 38 |
| Conread position: | 2-277 |
| Cow position: | chr26:4613380-4613661 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 121 |
| Conread position: | 2-600 |
| Cow position: | chr26:8344554-8343958 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 11-228 |
| Cow position: | chr26:24818994-24819208 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 288-474 |
| Cow position: | chr26:26087943-26087760 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 146 |
| Conread position: | 1-338 |
| Cow position: | chr27:22442521-22442189 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 2-307 |
| Cow position: | chr27:4348138-4347843 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 3-293 |
| Cow position: | chr27:10917288-10917570 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 119 |
| Conread position: | 1-369 |
| Cow position: | chr29:40704869-40705229 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 131-299 |
| Cow position: | chr29:26240860-26241032 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 11-289 |
| Cow position: | chr3:45506294-45506011 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 112 |
| Conread position: | 13-289 |
| Cow position: | chr3:66626788-66627056 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 112 |
| Conread position: | 16-267 |
| Cow position: | chr3:67837127-67837378 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 300-490 |
| Cow position: | chr3:67837381-67837571 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 158 |
| Conread position: | 2-209 |
| Cow position: | chr4:24025918-24026122 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 116 |
| Conread position: | 92-293 |
| Cow position: | chr4:29255958-29255758 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 2-202 |
| Cow position: | chr5:25449470-25449273 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 57-209 |
| Cow position: | chr5:42769732-42769882 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 133, 5 |
| Conread position: | 3-301 |
| Cow position: | chr6:41259983-41259687 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 120 |
| Conread position: | 11-189 |
| Cow position: | chr6:2640983-2641158 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 123-289 |
| Cow position: | chr6:14347946-14348115 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 8-489 |
| Cow position: | chr8:43944967-43945423 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 41 |
| Conread position: | 2-329 |
| Cow position: | chr9:50606582-50606257 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 21 |