Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rpbfe0123_b23.5
        

               Conread position:
               1-271
               

               Cow position:
               chr10:9010468-9010198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-310
               

               Cow position:
               chr10:8996656-8996347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr10:8996320-8996009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr10:8996488-8996177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr10:8996572-8996261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 277
               

               Conread position:
               1-312
               

               Cow position:
               chr10:8996740-8996429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr10:9031353-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr10:9031269-9031585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               12, 27
               

               Conread position:
               3-288
               

               Cow position:
               chr10:21939222-21938937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               9, 18
               

               Conread position:
               3-312
               

               Cow position:
               chr10:8996822-8996513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 34
               

               Conread position:
               3-312
               

               Cow position:
               chr10:9010298-9009989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-317
               

               Cow position:
               chr10:9010382-9010068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-317
               

               Cow position:
               chr10:9010550-9010236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               3-333
               

               Cow position:
               chr10:8996234-8995914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               234, 0
               

               Conread position:
               4-312
               

               Cow position:
               chr10:21939137-21938829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               10, 25
               

               Conread position:
               21-312
               

               Cow position:
               chr10:8996888-8996597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               44-310
               

               Cow position:
               chr10:9031228-9031494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               92-310
               

               Cow position:
               chr10:8996901-8996683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               117, 106
               

               Conread position:
               1-268
               

               Cow position:
               chr11:74554999-74554732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr11:74554915-74554606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               272, 277
               

               Conread position:
               1-312
               

               Cow position:
               chr11:74555083-74554772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr11:74554663-74554347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-176
               

               Cow position:
               chr11:74554325-74554154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               3-271
               

               Cow position:
               chr11:74554745-74554477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-315
               

               Cow position:
               chr11:74554577-74554265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               41, 28
               

               Conread position:
               3-320
               

               Cow position:
               chr11:74554493-74554176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-227
               

               Cow position:
               chr13:39984678-39984903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               120, 104
               

               Conread position:
               2-271
               

               Cow position:
               chr13:56334083-56334350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               239, 0
               

               Conread position:
               2-312
               

               Cow position:
               chr13:39984510-39984820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               88, 96
               

               Conread position:
               2-333
               

               Cow position:
               chr13:39984426-39984756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               172, 179
               

               Conread position:
               3-312
               

               Cow position:
               chr13:39984259-39984568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr13:39984343-39984652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               255, 262
               

               Conread position:
               3-312
               

               Cow position:
               chr13:56333571-56333880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               24, 16
               

               Conread position:
               3-333
               

               Cow position:
               chr13:39984175-39984504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               314, 0
               

               Conread position:
               7-326
               

               Cow position:
               chr13:39983927-39984247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               311, 0
               

               Conread position:
               7-326
               

               Cow position:
               chr13:39984599-39984919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               312, 306
               

               Conread position:
               9-312
               

               Cow position:
               chr13:56333661-56333964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               5, 19
               

               Conread position:
               21-312
               

               Cow position:
               chr13:56333505-56333796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               90, 82
               

               Conread position:
               27-262
               

               Cow position:
               chr13:56292067-56291831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               81, 68
               

               Conread position:
               41-303
               

               Cow position:
               chr13:56317929-56318191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               80, 67
               

               Conread position:
               41-312
               

               Cow position:
               chr13:56333945-56334225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               42-271
               

               Cow position:
               chr13:56317487-56317714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               80, 64
               

               Conread position:
               42-320
               

               Cow position:
               chr13:56292136-56291858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               154, 137
               

               Conread position:
               63-308
               

               Cow position:
               chr13:56334060-56334305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               65-312
               

               Cow position:
               chr13:56292194-56291950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               193, 38
               

               Conread position:
               1-257
               

               Cow position:
               chr14:25794402-25794147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               69, 242
               

               Conread position:
               1-308
               

               Cow position:
               chr14:25795410-25795103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               113, 101
               

               Conread position:
               1-310
               

               Cow position:
               chr14:25836071-25836380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               258, 267
               

               Conread position:
               1-310
               

               Cow position:
               chr14:25877435-25877744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               126, 111
               

               Conread position:
               1-312
               

               Cow position:
               chr14:25783536-25783847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr14:25783620-25783931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr14:25794486-25794174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr14:25794738-25794427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 21
               

               Conread position:
               1-312
               

               Cow position:
               chr14:25794822-25794511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               114, 105
               

               Conread position:
               1-312
               

               Cow position:
               chr14:25836743-25837054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               209, 200
               

               Conread position:
               1-312
               

               Cow position:
               chr14:25859544-25859855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               257, 267
               

               Conread position:
               1-315
               

               Cow position:
               chr14:25783368-25783682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 102
               

               Conread position:
               1-315
               

               Cow position:
               chr14:25795326-25795012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25783452-25783767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 18
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25783704-25784019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25783956-25784271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25784040-25784355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25784124-25784439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 30
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25784376-25784691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25794990-25794675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr14:25795074-25794759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr14:25784460-25784770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               271, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr14:25795158-25794842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr14:25783788-25784107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr14:25794654-25794335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               187, 198
               

               Conread position:
               1-320
               

               Cow position:
               chr14:25876511-25876830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               204, 209
               

               Conread position:
               1-322
               

               Cow position:
               chr14:25784208-25784529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-310
               

               Cow position:
               chr14:25836660-25836968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               257, 266
               

               Conread position:
               2-312
               

               Cow position:
               chr14:25836492-25836802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               206
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               272, 276
               

               Conread position:
               2-316
               

               Cow position:
               chr14:25784293-25784607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-316
               

               Cow position:
               chr14:25795241-25794927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-320
               

               Cow position:
               chr14:25860049-25860367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-232
               

               Cow position:
               chr14:25836997-25837226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-258
               

               Cow position:
               chr14:25911025-25911278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               243, 0
               

               Conread position:
               3-263
               

               Cow position:
               chr14:25859714-25859974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-263
               

               Cow position:
               chr14:25877605-25877865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-271
               

               Cow position:
               chr14:3155435-3155703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-271
               

               Cow position:
               chr14:3156092-3156360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-272
               

               Cow position:
               chr14:25860386-25860655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               124, 109
               

               Conread position:
               3-286
               

               Cow position:
               chr14:25860134-25860417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-286
               

               Cow position:
               chr14:25877185-25877468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               207, 200
               

               Conread position:
               3-295
               

               Cow position:
               chr14:447615-447907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               3-296
               

               Cow position:
               chr14:25859378-25859671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               193, 181
               

               Conread position:
               3-309
               

               Cow position:
               chr14:3155924-3156230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-310
               

               Cow position:
               chr14:3080400-3080093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               3-310
               

               Cow position:
               chr14:3080652-3080345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               3-310
               

               Cow position:
               chr14:3127828-3127521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               3-310
               

               Cow position:
               chr14:25836241-25836548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               208, 202
               

               Conread position:
               3-310
               

               Cow position:
               chr14:25836409-25836716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               3-310
               

               Cow position:
               chr14:25860218-25860525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               256, 281
               

               Conread position:
               3-310
               

               Cow position:
               chr14:25876345-25876652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               143, 131
               

               Conread position:
               3-310
               

               Cow position:
               chr14:25876429-25876736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               208, 202
               

               Conread position:
               3-310
               

               Cow position:
               chr14:25877269-25877576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               256, 281
               

               Conread position:
               3-310
               

               Cow position:
               chr14:25910941-25911248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               256, 265
               

               Conread position:
               3-311
               

               Cow position:
               chr14:3156176-3156484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr14:680417-680726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr14:680837-681146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               35, 27
               

               Conread position:
               3-312
               

               Cow position:
               chr14:3080232-3079923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               37, 33
               

               Conread position:
               3-312
               

               Cow position:
               chr14:3080316-3080007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr14:3080820-3080511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 200
               

               Conread position:
               3-312
               

               Cow position:
               chr14:3100811-3100502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               3-312
               

               Cow position:
               chr14:3155519-3155828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr14:25794568-25794258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr14:25836577-25836886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               256, 265
               

               Conread position:
               3-312
               

               Cow position:
               chr14:25836913-25837222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               9, 18
               

               Conread position:
               3-312
               

               Cow position:
               chr14:25859294-25859603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               10, 20
               

               Conread position:
               3-312
               

               Cow position:
               chr14:25860302-25860611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               186, 208
               

               Conread position:
               3-312
               

               Cow position:
               chr14:25876597-25876906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               201, 205
               

               Conread position:
               3-312
               

               Cow position:
               chr14:25877353-25877662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               186, 208
               

               Conread position:
               3-313
               

               Cow position:
               chr14:25794904-25794594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-316
               

               Cow position:
               chr14:680921-681234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               206, 200
               

               Conread position:
               3-316
               

               Cow position:
               chr14:25835989-25836302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-316
               

               Cow position:
               chr14:25836157-25836470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-317
               

               Cow position:
               chr14:25877101-25877415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-320
               

               Cow position:
               chr14:25836325-25836642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-320
               

               Cow position:
               chr14:25876765-25877082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               282, 288
               

               Conread position:
               3-321
               

               Cow position:
               chr14:25783874-25784192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-321
               

               Cow position:
               chr14:25877521-25877839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               3-324
               

               Cow position:
               chr14:25860470-25860792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               9-288
               

               Cow position:
               chr14:3156014-3156293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               9-312
               

               Cow position:
               chr14:25835912-25836214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               279, 5
               

               Conread position:
               15-286
               

               Cow position:
               chr14:25859810-25860081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               191, 173
               

               Conread position:
               33-315
               

               Cow position:
               chr14:25795462-25795180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               172, 156
               

               Conread position:
               39-310
               

               Cow position:
               chr14:3101441-3101171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               67, 79
               

               Conread position:
               41-310
               

               Cow position:
               chr14:3155389-3155658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               41-310
               

               Cow position:
               chr14:3155878-3156147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               41-316
               

               Cow position:
               chr14:25783324-25783599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 146
               

               Conread position:
               42-263
               

               Cow position:
               chr14:3127873-3127651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               218, 0
               

               Conread position:
               47-258
               

               Cow position:
               chr14:3156547-3156755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               48-299
               

               Cow position:
               chr14:420630-420881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               95, 100
               

               Conread position:
               117-316
               

               Cow position:
               chr14:25783316-25783515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               77, 65
               

               Conread position:
               147-312
               

               Cow position:
               chr14:3155411-3155576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr16:14627225-14626916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               187, 193
               

               Conread position:
               1-310
               

               Cow position:
               chr16:14627729-14627420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               111, 104
               

               Conread position:
               1-312
               

               Cow position:
               chr16:14627309-14626998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr16:14627477-14627166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr16:14627645-14627329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               140, 147
               

               Conread position:
               2-161
               

               Cow position:
               chr16:14626888-14626729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-241
               

               Cow position:
               chr16:14626971-14626733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr16:14627139-14626830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-316
               

               Cow position:
               chr16:14627055-14626742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-317
               

               Cow position:
               chr16:14627391-14627077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-317
               

               Cow position:
               chr16:14627895-14627581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-316
               

               Cow position:
               chr16:14627558-14627246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               9-308
               

               Cow position:
               chr16:14627804-14627506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               204
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               62-268
               

               Cow position:
               chr16:14627920-14627714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-163
               

               Cow position:
               chr17:22551652-22551490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-185
               

               Cow position:
               chr17:22473778-22473963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               1-234
               

               Cow position:
               chr17:22589406-22589173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-251
               

               Cow position:
               chr17:22498783-22498533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-269
               

               Cow position:
               chr17:22552660-22552392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               19, 27
               

               Conread position:
               1-289
               

               Cow position:
               chr17:22553080-22552792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               185, 195
               

               Conread position:
               1-307
               

               Cow position:
               chr17:22499371-22499065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-308
               

               Cow position:
               chr17:22452105-22451798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-308
               

               Cow position:
               chr17:22589910-22589603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22551820-22551511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               42, 35
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22552072-22551763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               258, 279
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22552240-22551931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 279
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22552744-22552435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 35
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22552996-22552687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               185, 195
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22589826-22589517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               301, 296
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22590162-22589853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               21, 27
               

               Conread position:
               1-310
               

               Cow position:
               chr17:22590246-22589937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr17:22452189-22451878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               205, 209
               

               Conread position:
               1-312
               

               Cow position:
               chr17:22452357-22452046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr17:22499287-22498976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               1-320
               

               Cow position:
               chr17:22499035-22498716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               112, 102
               

               Conread position:
               1-320
               

               Cow position:
               chr17:22552492-22552173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr17:22590078-22589759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-321
               

               Cow position:
               chr17:22589994-22589675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               219
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               19, 27
               

               Conread position:
               1-330
               

               Cow position:
               chr17:22499119-22498791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               110, 104
               

               Conread position:
               1-336
               

               Cow position:
               chr17:22473358-22473692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               316, 0
               

               Conread position:
               3-241
               

               Cow position:
               chr17:22551734-22551496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               183, 193
               

               Conread position:
               3-258
               

               Cow position:
               chr17:22473696-22473952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               228, 0
               

               Conread position:
               3-261
               

               Cow position:
               chr17:22452019-22451761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-265
               

               Cow position:
               chr17:22589656-22589394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 27
               

               Conread position:
               3-274
               

               Cow position:
               chr17:22552910-22552639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               34, 40
               

               Conread position:
               3-310
               

               Cow position:
               chr17:22473444-22473751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               100, 106
               

               Conread position:
               3-310
               

               Cow position:
               chr17:22551986-22551679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-310
               

               Cow position:
               chr17:22552406-22552099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               213
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               33, 40
               

               Conread position:
               3-312
               

               Cow position:
               chr17:22452271-22451962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               139, 145
               

               Conread position:
               3-312
               

               Cow position:
               chr17:22473276-22473585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr17:22473612-22473921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               124, 103
               

               Conread position:
               3-312
               

               Cow position:
               chr17:22498949-22498640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               185, 195
               

               Conread position:
               3-312
               

               Cow position:
               chr17:22552826-22552517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-320
               

               Cow position:
               chr17:22552154-22551837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               183, 193
               

               Conread position:
               3-320
               

               Cow position:
               chr17:22552322-22552005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               40, 34
               

               Conread position:
               3-320
               

               Cow position:
               chr17:22552574-22552257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               184, 194
               

               Conread position:
               3-333
               

               Cow position:
               chr17:22451935-22451606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               124, 103
               

               Conread position:
               3-336
               

               Cow position:
               chr17:22589572-22589240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               39, 33
               

               Conread position:
               9-310
               

               Cow position:
               chr17:22551896-22551595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               261, 271
               

               Conread position:
               27-310
               

               Cow position:
               chr17:22590304-22590021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               232, 253
               

               Conread position:
               35-268
               

               Cow position:
               chr17:22553131-22552897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               7, 66
               

               Conread position:
               39-312
               

               Cow position:
               chr17:22473231-22473501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               40-310
               

               Cow position:
               chr17:22499164-22498894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               40-311
               

               Cow position:
               chr17:22498828-22498557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               41-308
               

               Cow position:
               chr17:22452401-22452134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               49-312
               

               Cow position:
               chr17:22499409-22499144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               106-317
               

               Cow position:
               chr17:22590308-22590098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               125-312
               

               Cow position:
               chr17:22452401-22452214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-153
               

               Cow position:
               chr18:41198608-41198760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-161
               

               Cow position:
               chr18:43053350-43053190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-186
               

               Cow position:
               chr18:40324103-40323919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               1-211
               

               Cow position:
               chr18:56494289-56494499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 29
               

               Conread position:
               1-224
               

               Cow position:
               chr18:43092973-43092752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               1-226
               

               Cow position:
               chr18:40307118-40307343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-232
               

               Cow position:
               chr18:44397742-44397511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               28, 20
               

               Conread position:
               1-234
               

               Cow position:
               chr18:42674624-42674391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               195, 179
               

               Conread position:
               1-237
               

               Cow position:
               chr18:55066581-55066345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               111, 103
               

               Conread position:
               1-238
               

               Cow position:
               chr18:41948567-41948329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               209, 205
               

               Conread position:
               1-241
               

               Cow position:
               chr18:52448141-52448382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               1-242
               

               Cow position:
               chr18:43053434-43053193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-248
               

               Cow position:
               chr18:43093969-43093722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               1-258
               

               Cow position:
               chr18:44153923-44153672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               26, 34
               

               Conread position:
               1-259
               

               Cow position:
               chr18:42791577-42791835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-259
               

               Cow position:
               chr18:50048610-50048352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-259
               

               Cow position:
               chr18:53525801-53526059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-261
               

               Cow position:
               chr18:53509347-53509607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-262
               

               Cow position:
               chr18:50058674-50058414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               1-262
               

               Cow position:
               chr18:50099420-50099681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               1-262
               

               Cow position:
               chr18:50295465-50295726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               9, 29
               

               Conread position:
               1-262
               

               Cow position:
               chr18:56433825-56434088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               65, 192
               

               Conread position:
               1-265
               

               Cow position:
               chr18:52011830-52011566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               126, 114
               

               Conread position:
               1-268
               

               Cow position:
               chr18:41198440-41198707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-268
               

               Cow position:
               chr18:49033357-49033090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               1-268
               

               Cow position:
               chr18:50083979-50084246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               42, 29
               

               Conread position:
               1-269
               

               Cow position:
               chr18:50059430-50059162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               90, 98
               

               Conread position:
               1-270
               

               Cow position:
               chr18:40306698-40306967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               38, 32
               

               Conread position:
               1-270
               

               Cow position:
               chr18:44253614-44253346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               1-270
               

               Cow position:
               chr18:54968147-54968416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-270
               

               Cow position:
               chr18:54980341-54980609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               257, 229
               

               Conread position:
               1-271
               

               Cow position:
               chr18:40085911-40085640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 196
               

               Conread position:
               1-271
               

               Cow position:
               chr18:53509515-53509785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               21, 31
               

               Conread position:
               1-271
               

               Cow position:
               chr18:53526221-53526489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               215, 0
               

               Conread position:
               1-271
               

               Cow position:
               chr18:53586722-53586452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               188, 202
               

               Conread position:
               1-271
               

               Cow position:
               chr18:54967228-54967498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-271
               

               Cow position:
               chr18:54993097-54993367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               108, 104
               

               Conread position:
               1-271
               

               Cow position:
               chr18:55009004-55009274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-271
               

               Cow position:
               chr18:56330162-56329892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               188, 201
               

               Conread position:
               1-272
               

               Cow position:
               chr18:44253123-44252860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               112, 24
               

               Conread position:
               1-272
               

               Cow position:
               chr18:56248134-56247864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               237, 0
               

               Conread position:
               1-272
               

               Cow position:
               chr18:56493953-56494224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               19, 29
               

               Conread position:
               1-273
               

               Cow position:
               chr18:53525717-53525989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 27
               

               Conread position:
               1-273
               

               Cow position:
               chr18:53560119-53560392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-278
               

               Cow position:
               chr18:43119794-43119517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-286
               

               Cow position:
               chr18:42959695-42959410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-288
               

               Cow position:
               chr18:55523669-55523956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               1-291
               

               Cow position:
               chr18:56494205-56494495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-295
               

               Cow position:
               chr18:56128566-56128860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               208, 197
               

               Conread position:
               1-297
               

               Cow position:
               chr18:50022039-50021743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               17, 27
               

               Conread position:
               1-297
               

               Cow position:
               chr18:53498585-53498884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 31
               

               Conread position:
               1-298
               

               Cow position:
               chr18:43048535-43048240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               259, 212
               

               Conread position:
               1-307
               

               Cow position:
               chr18:43168237-43168543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-307
               

               Cow position:
               chr18:50021700-50021394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               20, 27
               

               Conread position:
               1-307
               

               Cow position:
               chr18:50246354-50246660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 31
               

               Conread position:
               1-307
               

               Cow position:
               chr18:55008836-55009142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               108, 104
               

               Conread position:
               1-307
               

               Cow position:
               chr18:56316326-56316632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               294, 289
               

               Conread position:
               1-308
               

               Cow position:
               chr18:22634917-22635224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               126, 103
               

               Conread position:
               1-308
               

               Cow position:
               chr18:40086662-40086350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 57
               

               Conread position:
               1-308
               

               Cow position:
               chr18:42674960-42674653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-308
               

               Cow position:
               chr18:42985367-42985060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 104
               

               Conread position:
               1-308
               

               Cow position:
               chr18:44253698-44253391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 65
               

               Conread position:
               1-308
               

               Cow position:
               chr18:44397826-44397519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-308
               

               Cow position:
               chr18:50022378-50022071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               185, 210
               

               Conread position:
               1-308
               

               Cow position:
               chr18:50848360-50848667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               1-308
               

               Cow position:
               chr18:51367905-51367599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               142, 95
               

               Conread position:
               1-309
               

               Cow position:
               chr18:42674708-42674400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-309
               

               Cow position:
               chr18:52447049-52447357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-309
               

               Cow position:
               chr18:56434406-56434714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr18:1418195-1418504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               272, 279
               

               Conread position:
               1-310
               

               Cow position:
               chr18:1418279-1418588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               24, 19
               

               Conread position:
               1-310
               

               Cow position:
               chr18:14453179-14452870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr18:41197684-41197993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 196
               

               Conread position:
               1-310
               

               Cow position:
               chr18:41198272-41198581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               1-310
               

               Cow position:
               chr18:42675212-42674903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr18:42744440-42744131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr18:42791241-42791550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               1-310
               

               Cow position:
               chr18:42791997-42792306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               258, 279
               

               Conread position:
               1-310
               

               Cow position:
               chr18:43093645-43093336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               215
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               273, 279
               

               Conread position:
               1-310
               

               Cow position:
               chr18:43167901-43168210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               271, 279
               

               Conread position:
               1-310
               

               Cow position:
               chr18:43168153-43168462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr18:49022839-49023148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               37, 29
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50021787-50021475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50049202-50048889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               24, 18
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50059262-50058953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               12, 27
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50083307-50083616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               24, 19
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50083895-50084204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               9, 28
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50099924-50100233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 31
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50246270-50246579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               21, 31
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50246438-50246747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               11, 33
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50848192-50848501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               72, 65
               

               Conread position:
               1-310
               

               Cow position:
               chr18:50848696-50849005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               269, 279
               

               Conread position:
               1-310
               

               Cow position:
               chr18:51367570-51367261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               41, 35
               

               Conread position:
               1-310
               

               Cow position:
               chr18:53559951-53560260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               1-310
               

               Cow position:
               chr18:53586890-53586581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               116, 112
               

               Conread position:
               1-310
               

               Cow position:
               chr18:53586974-53586665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               19, 29
               

               Conread position:
               1-310
               

               Cow position:
               chr18:56330078-56329769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               272, 282
               

               Conread position:
               1-311
               

               Cow position:
               chr18:33063989-33063679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               19, 29
               

               Conread position:
               1-311
               

               Cow position:
               chr18:40306194-40306504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-311
               

               Cow position:
               chr18:42985451-42985141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 37
               

               Conread position:
               1-311
               

               Cow position:
               chr18:43175583-43175273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-311
               

               Cow position:
               chr18:54993685-54993992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               294, 229
               

               Conread position:
               1-312
               

               Cow position:
               chr18:14453659-14453348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               146, 142
               

               Conread position:
               1-312
               

               Cow position:
               chr18:40306278-40306589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               37, 30
               

               Conread position:
               1-312
               

               Cow position:
               chr18:40306446-40306757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 29
               

               Conread position:
               1-312
               

               Cow position:
               chr18:40306530-40306841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               9, 22
               

               Conread position:
               1-312
               

               Cow position:
               chr18:40306950-40307261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               41, 28
               

               Conread position:
               1-312
               

               Cow position:
               chr18:40324271-40323960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:40324439-40324128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               220
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               14, 25
               

               Conread position:
               1-312
               

               Cow position:
               chr18:40324775-40324464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:41198104-41198415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 195
               

               Conread position:
               1-312
               

               Cow position:
               chr18:41198188-41198499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 20
               

               Conread position:
               1-312
               

               Cow position:
               chr18:41948735-41948424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:41949071-41948760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42674876-42674565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 191
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42675044-42674733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 105
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42790989-42791300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               218
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               125, 117
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42792081-42792392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42792249-42792560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               121, 114
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42837659-42837348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42960190-42959879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42984779-42984468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:42985535-42985224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 188
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43022290-43021979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 195
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43022878-43022567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43093561-43093250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43093726-43093418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               191, 52
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43119878-43119567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43120130-43119819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 113
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43120214-43119903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:43175163-43174852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:44154429-44154115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 116
               

               Conread position:
               1-312
               

               Cow position:
               chr18:44240034-44240345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 272
               

               Conread position:
               1-312
               

               Cow position:
               chr18:44240202-44240513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:44240538-44240849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:44397910-44397599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:44398078-44397767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:44398246-44397935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:49022671-49022982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50059010-50058699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               42, 35
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50099672-50099983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               11, 33
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50295213-50295524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               260, 286
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50295297-50295608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               17, 28
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50848276-50848587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               19, 28
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50848444-50848755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               41, 35
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50848528-50848839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               1-312
               

               Cow position:
               chr18:50848948-50849259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               41, 30
               

               Conread position:
               1-312
               

               Cow position:
               chr18:51368325-51368014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               270, 277
               

               Conread position:
               1-312
               

               Cow position:
               chr18:51789532-51789221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 113
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52427826-52428137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 271
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52427994-52428305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 117
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52428078-52428389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52428162-52428473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 25
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52428330-52428641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52428414-52428725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52428498-52428809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52428582-52428893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52433175-52433486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52433343-52433654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 25
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52433511-52433822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52433595-52433906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52433679-52433990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52433763-52434074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52447301-52447612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 57
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52447553-52447864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:52447805-52448116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53498246-53498560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               32, 28
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53509263-53509574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               12, 27
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53525969-53526280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               209
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               21, 31
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53560203-53560514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               271, 285
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53560287-53560598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53586554-53586243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               19, 29
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53586638-53586327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               42, 29
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53610022-53609711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               185, 193
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53635347-53635036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               185, 193
               

               Conread position:
               1-312
               

               Cow position:
               chr18:53635599-53635288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               209, 199
               

               Conread position:
               1-312
               

               Cow position:
               chr18:55008584-55008895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               48, 26
               

               Conread position:
               1-312
               

               Cow position:
               chr18:55008668-55008979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               22, 31
               

               Conread position:
               1-312
               

               Cow position:
               chr18:55067085-55066774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               23, 33
               

               Conread position:
               1-312
               

               Cow position:
               chr18:56128398-56128709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr18:56128818-56129129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               185, 193
               

               Conread position:
               1-312
               

               Cow position:
               chr18:56247704-56247399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               209, 191
               

               Conread position:
               1-312
               

               Cow position:
               chr18:56316242-56316553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               187, 194
               

               Conread position:
               1-312
               

               Cow position:
               chr18:56434658-56434969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               37, 28
               

               Conread position:
               1-312
               

               Cow position:
               chr18:56493869-56494180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               32, 28
               

               Conread position:
               1-313
               

               Cow position:
               chr18:54967312-54967624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-313
               

               Cow position:
               chr18:55066917-55066605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               19, 29
               

               Conread position:
               1-314
               

               Cow position:
               chr18:43175658-43175354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-315
               

               Cow position:
               chr18:41949239-41948925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 106
               

               Conread position:
               1-315
               

               Cow position:
               chr18:43022626-43022312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 113
               

               Conread position:
               1-315
               

               Cow position:
               chr18:53586806-53586492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               23, 33
               

               Conread position:
               1-316
               

               Cow position:
               chr18:40086489-40086176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:40306614-40306929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               205
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               42, 29
               

               Conread position:
               1-316
               

               Cow position:
               chr18:41197600-41197915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 280
               

               Conread position:
               1-316
               

               Cow position:
               chr18:41197852-41198167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 31
               

               Conread position:
               1-316
               

               Cow position:
               chr18:41948819-41948504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:41948903-41948588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:41949323-41949008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42744524-42744209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42792585-42792900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               258, 279
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42837491-42837176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42837743-42837428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42959938-42959632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               222
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               103, 111
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42985031-42984716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 272
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42985115-42984800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 105
               

               Conread position:
               1-316
               

               Cow position:
               chr18:42985283-42984968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 26
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43022374-43022059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43022542-43022227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43022710-43022395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43022794-43022479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 272
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43022962-43022647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 277
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43023046-43022731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 182
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43048703-43048388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43093309-43092994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 194
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43120046-43119731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43174911-43174596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 30
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43174995-43174680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 114
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43175247-43174932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:43175499-43175184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44154006-44153698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44154258-44153944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44184441-44184126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44184525-44184210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 191
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44184777-44184462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 106
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44240118-44240433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 97
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44240370-44240685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 272
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44240454-44240769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 194
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44253291-44252977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:44398330-44398015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:50059178-50058863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               41, 30
               

               Conread position:
               1-316
               

               Cow position:
               chr18:50271486-50271801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               105, 115
               

               Conread position:
               1-316
               

               Cow position:
               chr18:51368157-51367842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr18:53560455-53560770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               187, 201
               

               Conread position:
               1-317
               

               Cow position:
               chr18:22634665-22634981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               24, 19
               

               Conread position:
               1-317
               

               Cow position:
               chr18:33064325-33064009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               19, 30
               

               Conread position:
               1-317
               

               Cow position:
               chr18:40306866-40307182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               220
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               125, 110
               

               Conread position:
               1-317
               

               Cow position:
               chr18:40324355-40324039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               126, 107
               

               Conread position:
               1-317
               

               Cow position:
               chr18:42675128-42674812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:42744188-42743872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:42791409-42791725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               271, 279
               

               Conread position:
               1-317
               

               Cow position:
               chr18:42960274-42959958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:43093141-43092825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 279
               

               Conread position:
               1-317
               

               Cow position:
               chr18:43174743-43174436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:44253946-44253634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:50848612-50848928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:53509683-53509997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-317
               

               Cow position:
               chr18:53525885-53526201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               142, 147
               

               Conread position:
               1-317
               

               Cow position:
               chr18:53559867-53560183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-317
               

               Cow position:
               chr18:53586302-53585986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:53635263-53634948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               213
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               41, 35
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54967144-54967460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               40, 30
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54967564-54967877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               191, 133
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54967729-54968043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               21, 31
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54968231-54968547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               208, 194
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54979585-54979901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               120, 106
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54979837-54980153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               37, 29
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54979921-54980237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               281, 289
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54980005-54980321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54980173-54980489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54992677-54992993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               119, 113
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54992761-54993077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54992929-54993245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54993181-54993497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               187, 197
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54993433-54993749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:54993517-54993833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               126, 106
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55008920-55009236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55017821-55018137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               61, 55
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55017905-55018221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               37, 26
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55017989-55018305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               40, 29
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55018073-55018389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               35, 29
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55018157-55018473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               189, 201
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55018241-55018557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               114, 106
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55018325-55018641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55018409-55018725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               280, 292
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55018493-55018810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               237, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55067001-55066685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               19, 29
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55523501-55523817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-317
               

               Cow position:
               chr18:55524005-55524321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               11, 33
               

               Conread position:
               1-317
               

               Cow position:
               chr18:56128902-56129217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               41, 29
               

               Conread position:
               1-320
               

               Cow position:
               chr18:33064241-33063922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 203
               

               Conread position:
               1-320
               

               Cow position:
               chr18:40075048-40075367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               241, 230
               

               Conread position:
               1-320
               

               Cow position:
               chr18:40086911-40086596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               195, 136
               

               Conread position:
               1-320
               

               Cow position:
               chr18:40324859-40324540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr18:41197936-41198255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr18:41198020-41198339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 279
               

               Conread position:
               1-320
               

               Cow position:
               chr18:42674792-42674473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr18:42744272-42743953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr18:42744692-42744373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 110
               

               Conread position:
               1-320
               

               Cow position:
               chr18:42791157-42791476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               41, 36
               

               Conread position:
               1-320
               

               Cow position:
               chr18:42791661-42791980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               1-320
               

               Cow position:
               chr18:42959854-42959544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               221
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               19, 27
               

               Conread position:
               1-320
               

               Cow position:
               chr18:43022458-43022139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 272
               

               Conread position:
               1-320
               

               Cow position:
               chr18:43175331-43175012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr18:43175415-43175096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 116
               

               Conread position:
               1-320
               

               Cow position:
               chr18:44184693-44184374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 191
               

               Conread position:
               1-320
               

               Cow position:
               chr18:44240286-44240605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 272
               

               Conread position:
               1-320
               

               Cow position:
               chr18:44253866-44253547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-320
               

               Cow position:
               chr18:50099504-50099823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               21, 30
               
1-320UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr18:51789364-51789045 (view  custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               126, 114
               
1-320UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:51812607-51812288 (view  custom track)

               
               
               
Alignm length: 321

               
               
               
Alignm identity: 213

               
               
               
Alignm E-value: 2e-38

               
               
               
Alignm gaps (pig, cow): 126, 114
1-320UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:52447973-52448293 (view  custom track)

               
               
               
Alignm length: 321

               
               
               
Alignm identity: 235

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 312, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr18:54979417-54979736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr18:55523585-55523904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:1-321
               
               
               Cow position:chr18:42827681-42828006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):185, 196

               
               
               Conread position:1-321
               
               
               Cow position:chr18:44184861-44184541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 106

               
               
               Conread position:1-321
               
               
               Cow position:chr18:44239866-44240186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-321
               
               
               Cow position:chr18:44253782-44253462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-321
               
               
               Cow position:chr18:50099000-50099320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):141, 147

               
               
               Conread position:1-321
               
               
               Cow position:chr18:50099336-50099656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:1-321
               
               
               Cow position:chr18:51400893-51401213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):120, 114

               
               
               Conread position:1-321
               
               
               Cow position:chr18:52447217-52447537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-322
               
               
               Cow position:chr18:42837407-42837085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 0

               
               
               Conread position:1-322
               
               
               Cow position:chr18:42960436-42960121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:1-330
               
               
               Cow position:chr18:40324691-40324363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 0

               
               
               Conread position:1-330
               
               
               Cow position:chr18:43174827-43174499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 0

               
               
               Conread position:1-332
               
               
               Cow position:chr18:33063905-33063574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-333
               
               
               Cow position:chr18:1417859-1418190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:1-333
               
               
               Cow position:chr18:40086321-40085991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 115

               
               
               Conread position:1-334
               
               
               Cow position:chr18:51812691-51812353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 0

               
               
               Conread position:1-336
               
               
               Cow position:chr18:1418111-1418445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:1-460
               
               
               Cow position:chr18:42744104-42743645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):371, 395

               
               
               Conread position:2-174
               
               
               Cow position:chr18:51969860-51970032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-232
               
               
               Cow position:chr18:44184188-44183958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-234
               
               
               Cow position:chr18:43174658-43174435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):122, 113

               
               
               Conread position:2-236
               
               
               Cow position:chr18:40075469-40075703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:2-269
               
               
               Cow position:chr18:43119709-43119441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):253, 247

               
               
               Conread position:2-269
               
               
               Cow position:chr18:51367485-51367218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr18:40324522-40324254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr18:56434323-56434591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:2-271
               
               
               Cow position:chr18:40324186-40323918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 0

               
               
               Conread position:2-272
               
               
               Cow position:chr18:51839115-51838845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-273
               
               
               Cow position:chr18:51969535-51969804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):111, 80

               
               
               Conread position:2-288
               
               
               Cow position:chr18:51812186-51811900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-310
               
               
               Cow position:chr18:42792502-42792810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-310
               
               
               Cow position:chr18:50849117-50849425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 113

               
               
               Conread position:2-310
               
               
               Cow position:chr18:51752225-51751917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:2-310
               
               
               Cow position:chr18:51813107-51812802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):259, 55

               
               
               Conread position:2-310
               
               
               Cow position:chr18:51839451-51839143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:2-312
               
               
               Cow position:chr18:43119961-43119651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 115

               
               
               Conread position:2-312
               
               
               Cow position:chr18:50048945-50048635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51751973-51751663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51765468-51765158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51766137-51765830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51789615-51789305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51812774-51812464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51812942-51812632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 113

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51839283-51838973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51969451-51969759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):111, 106

               
               
               Conread position:2-312
               
               
               Cow position:chr18:51969617-51969918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):279, 191

               
               
               Conread position:2-312
               
               
               Cow position:chr18:52427659-52427969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:52427743-52428053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:52427911-52428221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 196

               
               
               Conread position:2-312
               
               
               Cow position:chr18:52433008-52433318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):269, 275

               
               
               Conread position:2-312
               
               
               Cow position:chr18:52433092-52433402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr18:52433260-52433570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 106

               
               
               Conread position:2-316
               
               
               Cow position:chr18:41198357-41198671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-316
               
               
               Cow position:chr18:42744355-42744041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-316
               
               
               Cow position:chr18:42985198-42984884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 111

               
               
               Conread position:2-316
               
               
               Cow position:chr18:43048618-43048306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 0

               
               
               Conread position:2-316
               
               
               Cow position:chr18:44153603-44153292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):186, 16

               
               
               Conread position:2-316
               
               
               Cow position:chr18:44239951-44240265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-316
               
               
               Cow position:chr18:51368408-51368094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):272, 278

               
               
               Conread position:2-317
               
               
               Cow position:chr18:53559784-53560099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):187, 196

               
               
               Conread position:2-317
               
               
               Cow position:chr18:54966893-54967208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:2-320
               
               
               Cow position:chr18:14453262-14452944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:2-320
               
               
               Cow position:chr18:42837574-42837256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-320
               
               
               Cow position:chr18:42837910-42837592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-320
               
               
               Cow position:chr18:50083392-50083710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-320
               
               
               Cow position:chr18:54993350-54993668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):292, 265

               
               
               Conread position:2-365
               
               
               Cow position:chr18:51969367-51969730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 106

               
               
               Conread position:3-229
               
               
               Cow position:chr18:56329068-56328842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-235
               
               
               Cow position:chr18:41198526-41198758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-247
               
               
               Cow position:chr18:52428752-52428996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-247
               
               
               Cow position:chr18:52433933-52434177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-250
               
               
               Cow position:chr18:51400979-51401226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:3-254
               
               
               Cow position:chr18:51839030-51838779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-259
               
               
               Cow position:chr18:42693517-42693261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-259
               
               
               Cow position:chr18:53609936-53609681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:3-262
               
               
               Cow position:chr18:50058840-50058581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):183, 193

               
               
               Conread position:3-263
               
               
               Cow position:chr18:51838759-51838500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):139, 145

               
               
               Conread position:3-264
               
               
               Cow position:chr18:56128232-56128493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 111

               
               
               Conread position:3-267
               
               
               Cow position:chr18:42960020-42959755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:3-268
               
               
               Cow position:chr18:40306364-40306629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):141, 145

               
               
               Conread position:3-268
               
               
               Cow position:chr18:50849202-50849468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:3-268
               
               
               Cow position:chr18:53636101-53635836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:3-269
               
               
               Cow position:chr18:33064575-33064309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-269
               
               
               Cow position:chr18:56247786-56247520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-270
               
               
               Cow position:chr18:51367987-51367721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:3-270
               
               
               Cow position:chr18:56316160-56316427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:3-272
               
               
               Cow position:chr18:51812269-51812000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-272
               
               
               Cow position:chr18:56247374-56247107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):233, 0

               
               
               Conread position:3-276
               
               
               Cow position:chr18:50246020-50246292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:3-281
               
               
               Cow position:chr18:53610272-53609994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 103

               
               
               Conread position:3-281
               
               
               Cow position:chr18:56329740-56329462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-288
               
               
               Cow position:chr18:50049112-50048827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:3-291
               
               
               Cow position:chr18:51874419-51874707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-295
               
               
               Cow position:chr18:53635429-53635137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:3-295
               
               
               Cow position:chr18:53636017-53635725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-296
               
               
               Cow position:chr18:56128736-56129029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-298
               
               
               Cow position:chr18:51789446-51789151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:3-298
               
               
               Cow position:chr18:56128148-56128443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):270, 284

               
               
               Conread position:3-299
               
               
               Cow position:chr18:42791327-42791623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:3-299
               
               
               Cow position:chr18:50848866-50849162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:3-299
               
               
               Cow position:chr18:52448059-52448356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:3-299
               
               
               Cow position:chr18:53635933-53635637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):119, 111

               
               
               Conread position:3-300
               
               
               Cow position:chr18:14453993-14453696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:3-307
               
               
               Cow position:chr18:49033019-49032715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:3-307
               
               
               Cow position:chr18:50246524-50246828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:3-307
               
               
               Cow position:chr18:51839366-51839062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-307
               
               
               Cow position:chr18:52446967-52447271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 269

               
               
               Conread position:3-308
               
               
               Cow position:chr18:51751888-51751583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):186, 194

               
               
               Conread position:3-310
               
               
               Cow position:chr18:1418029-1418336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):267, 277

               
               
               Conread position:3-310
               
               
               Cow position:chr18:14453909-14453602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:41949153-41948846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:42792419-42792726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:3-310
               
               
               Cow position:chr18:43093475-43093168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:3-310
               
               
               Cow position:chr18:43167819-43168126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:43167987-43168294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:49022757-49023064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):255, 274

               
               
               Conread position:3-310
               
               
               Cow position:chr18:49032683-49032376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50048692-50048385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50048776-50048469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 111

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50059596-50059289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):256, 265

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50083813-50084120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50271656-50271963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50271740-50272047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):182, 193

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50848782-50849089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:3-310
               
               
               Cow position:chr18:50849034-50849341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:3-310
               
               
               Cow position:chr18:51400643-51400950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:3-310
               
               
               Cow position:chr18:51752308-51752001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-310
               
               
               Cow position:chr18:51789026-51788719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:3-310
               
               
               Cow position:chr18:51789278-51788971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-310
               
               
               Cow position:chr18:51812353-51812046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:51812521-51812214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-310
               
               
               Cow position:chr18:51839534-51839227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:56329236-56328929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr18:56329488-56329181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):270, 281

               
               
               Conread position:3-310
               
               
               Cow position:chr18:56329824-56329517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-311
               
               
               Cow position:chr18:53498504-53498811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:3-312
               
               
               Cow position:chr18:14453093-14452783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):260, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:33064071-33063762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:33064155-33063846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):185, 194

               
               
               Conread position:3-312
               
               
               Cow position:chr18:33064407-33064098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):185, 192

               
               
               Conread position:3-312
               
               
               Cow position:chr18:33064827-33064518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:33092995-33092686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:41948649-41948340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:42675294-42674985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:42792335-42792644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-312
               
               
               Cow position:chr18:42984945-42984636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 193

               
               
               Conread position:3-312
               
               
               Cow position:chr18:44154340-44154031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:3-312
               
               
               Cow position:chr18:44184271-44183962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:44184607-44184298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:44397992-44397683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:44398412-44398103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 275

               
               
               Conread position:3-312
               
               
               Cow position:chr18:49032851-49032542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:50083561-50083870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51367736-51367427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 112

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51368576-51368266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51400475-51400784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):124, 112

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51752140-51751831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51765299-51764990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51765383-51765074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51765719-51765410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):199, 187

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51765803-51765494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51765887-51765578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51765971-51765662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51789110-51788801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51789698-51789389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51789782-51789473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 103

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51812437-51812128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51839198-51838889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51874169-51874476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51874251-51874560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51969134-51969425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:51969702-51970002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):290, 103

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52428248-52428557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 108

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52428668-52428977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52433429-52433738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 102

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52433849-52434158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52447135-52447444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):230, 224

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52447387-52447696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 275

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52447639-52447948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 275

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52447723-52448032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:52447891-52448200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:53586468-53586159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:3-312
               
               
               Cow position:chr18:55066747-55066438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:56247454-56247149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 38

               
               
               Conread position:3-312
               
               
               Cow position:chr18:56316412-56316721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:3-312
               
               
               Cow position:chr18:56329152-56328843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr18:56494039-56494348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-313
               
               
               Cow position:chr18:33092827-33092517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr18:41197770-41198083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 193

               
               
               Conread position:3-316
               
               
               Cow position:chr18:41948985-41948672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 270

               
               
               Conread position:3-316
               
               
               Cow position:chr18:42744606-42744293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr18:42791075-42791388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:3-316
               
               
               Cow position:chr18:42837825-42837512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr18:42984861-42984548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 178

               
               
               Conread position:3-316
               
               
               Cow position:chr18:43093391-43093078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:3-316
               
               
               Cow position:chr18:43175077-43174764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr18:44184355-44184042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 103

               
               
               Conread position:3-316
               
               
               Cow position:chr18:44239784-44240097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 184

               
               
               Conread position:3-316
               
               
               Cow position:chr18:49033103-49032790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:3-316
               
               
               Cow position:chr18:50295383-50295696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:3-316
               
               
               Cow position:chr18:52011912-52011599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:3-317
               
               
               Cow position:chr18:1417945-1418259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):232, 224

               
               
               Conread position:3-317
               
               
               Cow position:chr18:33092911-33092597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 35

               
               
               Conread position:3-317
               
               
               Cow position:chr18:40075134-40075448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr18:40075218-40075532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr18:40306784-40307098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-317
               
               
               Cow position:chr18:40324605-40324291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 265

               
               
               Conread position:3-317
               
               
               Cow position:chr18:49032935-49032621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr18:53526139-53526451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):256, 265

               
               
               Conread position:3-317
               
               
               Cow position:chr18:53586384-53586070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:3-317
               
               
               Cow position:chr18:53587056-53586742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):114, 110

               
               
               Conread position:3-317
               
               
               Cow position:chr18:54966978-54967292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):207, 194

               
               
               Conread position:3-317
               
               
               Cow position:chr18:55066831-55066517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr18:56329320-56329006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr18:56494123-56494437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-318
               
               
               Cow position:chr18:49032347-49032033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr18:41197518-41197835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:3-320
               
               
               Cow position:chr18:42827515-42827832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr18:44398160-44397843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr18:51400727-51401044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:3-320
               
               
               Cow position:chr18:56247534-56247225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr18:56329404-56329087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):190, 199

               
               
               Conread position:3-321
               
               
               Cow position:chr18:40086153-40085843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:3-321
               
               
               Cow position:chr18:42791495-42791813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:3-321
               
               
               Cow position:chr18:42791747-42792065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-321
               
               
               Cow position:chr18:42827599-42827916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):267, 278

               
               
               Conread position:3-321
               
               
               Cow position:chr18:43168071-43168389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):183, 193

               
               
               Conread position:3-321
               
               
               Cow position:chr18:50083477-50083795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-321
               
               
               Cow position:chr18:51752056-51751738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-321
               
               
               Cow position:chr18:52447471-52447789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-321
               
               
               Cow position:chr18:56128064-56128382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:3-322
               
               
               Cow position:chr18:44254028-44253713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:3-328
               
               
               Cow position:chr18:42792167-42792493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):319, 0

               
               
               Conread position:3-333
               
               
               Cow position:chr18:42791915-42792244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:3-333
               
               
               Cow position:chr18:42960104-42959771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 0

               
               
               Conread position:3-333
               
               
               Cow position:chr18:43120296-43119967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 270

               
               
               Conread position:4-262
               
               
               Cow position:chr18:51368070-51367812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-312
               
               
               Cow position:chr18:51766054-51765746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:4-312
               
               
               Cow position:chr18:51789865-51789557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:4-312
               
               
               Cow position:chr18:51813024-51812716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-321
               
               
               Cow position:chr18:49022926-49023243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:5-307
               
               
               Cow position:chr18:22634837-22635139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:5-310
               
               
               Cow position:chr18:42675376-42675071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:5-312
               
               
               Cow position:chr18:42675543-42675237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:5-320
               
               
               Cow position:chr18:51368237-51367922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-310
               
               
               Cow position:chr18:49023013-49023316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:6-317
               
               
               Cow position:chr18:53560377-53560687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:7-312
               
               
               Cow position:chr18:49032511-49032206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):251, 276

               
               
               Conread position:7-312
               
               
               Cow position:chr18:49032763-49032458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:9-310
               
               
               Cow position:chr18:40307043-40307343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:9-312
               
               
               Cow position:chr18:51368485-51368182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:9-312
               
               
               Cow position:chr18:52427582-52427885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-316
               
               
               Cow position:chr18:50058749-50058445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:9-316
               
               
               Cow position:chr18:51367646-51367339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:9-322
               
               
               Cow position:chr18:50059674-50059361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-312
               
               
               Cow position:chr18:52432934-52433234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-320
               
               
               Cow position:chr18:44254102-44253799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):109, 102

               
               
               Conread position:14-316
               
               
               Cow position:chr18:40085979-40085679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 23

               
               
               Conread position:14-316
               
               
               Cow position:chr18:52012487-52012187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:14-317
               
               
               Cow position:chr18:54979514-54979817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:15-186
               
               
               Cow position:chr18:51969062-51969233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):98, 93

               
               
               Conread position:15-268
               
               
               Cow position:chr18:51874347-51874600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):112, 91

               
               
               Conread position:16-272
               
               
               Cow position:chr18:43120696-43120438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:16-317
               
               
               Cow position:chr18:42985606-42985303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 259

               
               
               Conread position:19-312
               
               
               Cow position:chr18:52427509-52427801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:19-312
               
               
               Cow position:chr18:52432858-52433150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:21-236
               
               
               Cow position:chr18:51873745-51873960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:22-316
               
               
               Cow position:chr18:43023109-43022815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:22-316
               
               
               Cow position:chr18:44184924-44184630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 170

               
               
               Conread position:22-316
               
               
               Cow position:chr18:44239719-44240013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-312
               
               
               Cow position:chr18:51789172-51788885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-271
               
               
               Cow position:chr18:43094027-43093783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-312
               
               
               Cow position:chr18:42675438-42675153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):117, 121

               
               
               Conread position:28-316
               
               
               Cow position:chr18:42960493-42960211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):99, 89

               
               
               Conread position:30-312
               
               
               Cow position:chr18:52012389-52012107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-272
               
               
               Cow position:chr18:51969805-51970046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:31-310
               
               
               Cow position:chr18:52012136-52011857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):78, 73

               
               
               Conread position:31-333
               
               
               Cow position:chr18:40086714-40086410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):173, 32

               
               
               Conread position:32-307
               
               
               Cow position:chr18:40075415-40075690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:33-310
               
               
               Cow position:chr18:50048998-50048721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):69, 83

               
               
               Conread position:33-312
               
               
               Cow position:chr18:40086964-40086685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:33-312
               
               
               Cow position:chr18:54980289-54980568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:33-312
               
               
               Cow position:chr18:54993633-54993912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:33-316
               
               
               Cow position:chr18:40086541-40086258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:33-317
               
               
               Cow position:chr18:53509631-53509915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):172, 182

               
               
               Conread position:33-317
               
               
               Cow position:chr18:53587110-53586826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:33-317
               
               
               Cow position:chr18:54993297-54993581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:33-320
               
               
               Cow position:chr18:14453316-14453028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:37-317
               
               
               Cow position:chr18:56434274-56434554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:38-316
               
               
               Cow position:chr18:42837958-42837680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-317
               
               
               Cow position:chr18:40075001-40075280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-320
               
               
               Cow position:chr18:42790942-42791224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 159

               
               
               Conread position:39-310
               
               
               Cow position:chr18:52011960-52011689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-310
               
               
               Cow position:chr18:52012212-52011941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-316
               
               
               Cow position:chr18:51368624-51368346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:40-268
               
               
               Cow position:chr18:50099207-50099436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):150, 159

               
               
               Conread position:40-307
               
               
               Cow position:chr18:22634538-22634803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:40-307
               
               
               Cow position:chr18:40075339-40075606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:40-309
               
               
               Cow position:chr18:51367783-51367514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-310
               
               
               Cow position:chr18:42827384-42827654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 67

               
               
               Conread position:40-310
               
               
               Cow position:chr18:50271609-50271879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 60

               
               
               Conread position:40-311
               
               
               Cow position:chr18:42790860-42791131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 67

               
               
               Conread position:40-312
               
               
               Cow position:chr18:50083682-50083954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):150, 159

               
               
               Conread position:40-312
               
               
               Cow position:chr18:55066626-55066354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-317
               
               
               Cow position:chr18:54979708-54979985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):81, 74

               
               
               Conread position:40-320
               
               
               Cow position:chr18:43093186-43092906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):219, 238

               
               
               Conread position:41-307
               
               
               Cow position:chr18:50251148-50251414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):142, 159

               
               
               Conread position:41-310
               
               
               Cow position:chr18:33064621-33064352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-310
               
               
               Cow position:chr18:50059306-50059037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 59

               
               
               Conread position:41-310
               
               
               Cow position:chr18:50099292-50099561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:41-311
               
               
               Cow position:chr18:50848148-50848418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):233, 240

               
               
               Conread position:41-312
               
               
               Cow position:chr18:33093041-33092770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-312
               
               
               Cow position:chr18:50083767-50084038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 168

               
               
               Conread position:41-312
               
               
               Cow position:chr18:50099880-50100151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):147, 159

               
               
               Conread position:41-312
               
               
               Cow position:chr18:51812819-51812548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-315
               
               
               Cow position:chr18:41949367-41949093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-316
               
               
               Cow position:chr18:42959739-42959464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-317
               
               
               Cow position:chr18:53560075-53560351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):232, 239

               
               
               Conread position:41-330
               
               
               Cow position:chr18:44253335-44253042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 226

               
               
               Conread position:41-339
               
               
               Cow position:chr18:56248176-56247879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):296, 12

               
               
               Conread position:42-268
               
               
               Cow position:chr18:43167774-43168000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-268
               
               
               Cow position:chr18:51765176-51764949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:42-268
               
               
               Cow position:chr18:56330205-56329979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-269
               
               
               Cow position:chr18:50271863-50272090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):149, 155

               
               
               Conread position:42-272
               
               
               Cow position:chr18:51874045-51874268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:42-284
               
               
               Cow position:chr18:40087403-40087158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 115

               
               
               Conread position:42-303
               
               
               Cow position:chr18:50246647-50246903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):203, 196

               
               
               Conread position:42-309
               
               
               Cow position:chr18:50099797-50100064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):145, 157

               
               
               Conread position:42-310
               
               
               Cow position:chr18:51970405-51970666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:42-310
               
               
               Cow position:chr18:56316115-56316383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 71

               
               
               Conread position:42-312
               
               
               Cow position:chr18:33064704-33064434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:42-312
               
               
               Cow position:chr18:42791870-42792140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-317
               
               
               Cow position:chr18:40074921-40075196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):71, 63

               
               
               Conread position:42-317
               
               
               Cow position:chr18:54968104-54968379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-317
               
               
               Cow position:chr18:54993054-54993329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-317
               
               
               Cow position:chr18:56434111-56434386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-320
               
               
               Cow position:chr18:51400850-51401128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-329
               
               
               Cow position:chr18:51969323-51969613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:43-316
               
               
               Cow position:chr18:43175778-43175520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:43-320
               
               
               Cow position:chr18:14454037-14453760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 60

               
               
               Conread position:44-312
               
               
               Cow position:chr18:44154470-44154199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:44-320
               
               
               Cow position:chr18:43120339-43120063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-310
               
               
               Cow position:chr18:50058882-50058617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):143, 151

               
               
               Conread position:45-312
               
               
               Cow position:chr18:53509224-53509490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:45-312
               
               
               Cow position:chr18:53525678-53525944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:46-312
               
               
               Cow position:chr18:56247827-56247561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:46-320
               
               
               Cow position:chr18:44398453-44398179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-313
               
               
               Cow position:chr18:52446927-52447193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-316
               
               
               Cow position:chr18:43048741-43048472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 58

               
               
               Conread position:48-310
               
               
               Cow position:chr18:51788897-51788636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:48-312
               
               
               Cow position:chr18:33093118-33092854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-310
               
               
               Cow position:chr18:42744727-42744467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-312
               
               
               Cow position:chr18:53636137-53635876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-312
               
               
               Cow position:chr18:40306161-40306421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:56-316
               
               
               Cow position:chr18:43120411-43120151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:58-310
               
               
               Cow position:chr18:56316047-56316299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-332
               
               
               Cow position:chr18:51838786-51838518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):214, 196

               
               
               Conread position:63-312
               
               
               Cow position:chr18:40324881-40324632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-316
               
               
               Cow position:chr18:43053456-43053203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):134, 126

               
               
               Conread position:64-320
               
               
               Cow position:chr18:49033378-49033122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-270
               
               
               Cow position:chr18:51969029-51969233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 127

               
               
               Conread position:68-310
               
               
               Cow position:chr18:51873708-51873950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 47

               
               
               Conread position:69-312
               
               
               Cow position:chr18:41197500-41197743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):205, 211

               
               
               Conread position:87-311
               
               
               Cow position:chr18:51400307-51400531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 61

               
               
               Conread position:121-320
               
               
               Cow position:chr18:42837959-42837760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:121-320
               
               
               Cow position:chr18:44398462-44398263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:125-316
               
               
               Cow position:chr18:41949367-41949176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:128-320
               
               
               Cow position:chr18:44154470-44154275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:134-320
               
               
               Cow position:chr18:42744727-42744541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-316
               
               
               Cow position:chr18:44184929-44184798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:429-1388
               
               
               Cow position:chr18:42743643-42742681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:977
               
               
               Alignm identity:810
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:1-224
               
               
               Cow position:chr19:23614885-23615108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-229
               
               
               Cow position:chr19:14959055-14958827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-235
               
               
               Cow position:chr19:14959544-14959310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):210, 199

               
               
               Conread position:1-269
               
               
               Cow position:chr19:20678396-20678664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):208, 191

               
               
               Conread position:1-270
               
               
               Cow position:chr19:20678480-20678746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 105

               
               
               Conread position:1-275
               
               
               Cow position:chr19:20678312-20678586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:1-286
               
               
               Cow position:chr19:20678144-20678429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr19:14940265-14940574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 276

               
               
               Conread position:1-310
               
               
               Cow position:chr19:20635440-20635131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr19:23614633-23614942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr19:43569947-43569642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr19:14940013-14940324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr19:14940601-14940912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:1-312
               
               
               Cow position:chr19:14940685-14940996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr19:14948441-14948131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):187, 37

               
               
               Conread position:1-312
               
               
               Cow position:chr19:14960198-14959889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:1-312
               
               
               Cow position:chr19:14960366-14960057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr19:20678060-20678371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 105

               
               
               Conread position:1-312
               
               
               Cow position:chr19:20678228-20678539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):111, 103

               
               
               Conread position:1-312
               
               
               Cow position:chr19:23613457-23613768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr19:23614045-23614356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:1-312
               
               
               Cow position:chr19:23614297-23614608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr19:23649663-23649974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):173, 180

               
               
               Conread position:1-312
               
               
               Cow position:chr19:23649747-23650058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 96

               
               
               Conread position:1-312
               
               
               Cow position:chr19:23649915-23650226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-315
               
               
               Cow position:chr19:23614129-23614443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr19:14940349-14940664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr19:20677640-20677955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):273, 277

               
               
               Conread position:1-316
               
               
               Cow position:chr19:23597390-23597705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 113

               
               
               Conread position:1-316
               
               
               Cow position:chr19:23613541-23613856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr19:43570199-43569883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 193

               
               
               Conread position:1-320
               
               
               Cow position:chr19:14940181-14940500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr19:23613709-23614028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr19:23614213-23614532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):187, 197

               
               
               Conread position:1-320
               
               
               Cow position:chr19:23614549-23614868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):187, 197

               
               
               Conread position:1-322
               
               
               Cow position:chr19:14940097-14940418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-331
               
               
               Cow position:chr19:14960032-14959702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):283, 212

               
               
               Conread position:2-312
               
               
               Cow position:chr19:23613374-23613684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):271, 282

               
               
               Conread position:2-312
               
               
               Cow position:chr19:23650000-23650310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-315
               
               
               Cow position:chr19:23650168-23650481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):259, 266

               
               
               Conread position:3-238
               
               
               Cow position:chr19:14948272-14948037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):185, 191

               
               
               Conread position:3-265
               
               
               Cow position:chr19:20677726-20677988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr19:20677810-20678075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):39, 34

               
               
               Conread position:3-270
               
               
               Cow position:chr19:20635606-20635339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-270
               
               
               Cow position:chr19:23597476-23597742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:3-271
               
               
               Cow position:chr19:23614467-23614735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:3-298
               
               
               Cow position:chr19:14940771-14941066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-302
               
               
               Cow position:chr19:14960114-14959815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):269, 275

               
               
               Conread position:3-305
               
               
               Cow position:chr19:43570355-43570063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:3-308
               
               
               Cow position:chr19:14948356-14948051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-308
               
               
               Cow position:chr19:23614803-23615108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr19:23597140-23597447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr19:23613879-23614186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr19:23614383-23614690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:3-310
               
               
               Cow position:chr19:23650085-23650392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr19:14940435-14940744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr19:14940519-14940828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr19:20635354-20635045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 108

               
               
               Conread position:3-312
               
               
               Cow position:chr19:20635522-20635213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr19:23596975-23597281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-312
               
               
               Cow position:chr19:23597224-23597533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr19:23597308-23597617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr19:23613627-23613936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):284, 280

               
               
               Conread position:3-312
               
               
               Cow position:chr19:23649581-23649890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:3-312
               
               
               Cow position:chr19:43570029-43569722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):297, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr19:43570113-43569804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):110, 104

               
               
               Conread position:3-316
               
               
               Cow position:chr19:14960448-14960137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr19:43570278-43569967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr19:23613795-23614112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):120, 112

               
               
               Conread position:3-320
               
               
               Cow position:chr19:23614719-23615036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):107, 101

               
               
               Conread position:7-320
               
               
               Cow position:chr19:23649837-23650150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-312
               
               
               Cow position:chr19:43570426-43570140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:23-312
               
               
               Cow position:chr19:14959606-14959317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:32-271
               
               
               Cow position:chr19:14916019-14916256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 73

               
               
               Conread position:33-336
               
               
               Cow position:chr19:14959269-14958973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:34-317
               
               
               Cow position:chr19:20677589-20677872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:40-312
               
               
               Cow position:chr19:14939969-14940240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:41-320
               
               
               Cow position:chr19:23649451-23649730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-320
               
               
               Cow position:chr19:23597095-23597373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-317
               
               
               Cow position:chr19:20678022-20678292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 101

               
               
               Conread position:48-316
               
               
               Cow position:chr19:23614008-23614276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:53-312
               
               
               Cow position:chr19:14915955-14916214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:63-316
               
               
               Cow position:chr19:23613351-23613604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-312
               
               
               Cow position:chr19:14959714-14959485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):192, 60

               
               
               Conread position:1-262
               
               
               Cow position:chr2:78754451-78754711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:1-262
               
               
               Cow position:chr2:78755775-78756036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:1-270
               
               
               Cow position:chr2:78754855-78755124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:1-289
               
               
               Cow position:chr2:82799633-82799921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):257, 267

               
               
               Conread position:1-308
               
               
               Cow position:chr2:78755609-78755914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 28

               
               
               Conread position:1-310
               
               
               Cow position:chr2:78754939-78755248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr2:78755275-78755582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr2:78755191-78755501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr2:82799885-82800196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:1-316
               
               
               Cow position:chr2:82799549-82799864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):110, 95

               
               
               Conread position:1-317
               
               
               Cow position:chr2:78755691-78756007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 105

               
               
               Conread position:1-321
               
               
               Cow position:chr2:78755107-78755426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:1-321
               
               
               Cow position:chr2:78755525-78755843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:2-235
               
               
               Cow position:chr2:78756112-78756344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:2-317
               
               
               Cow position:chr2:78755443-78755755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:3-297
               
               
               Cow position:chr2:82799719-82800013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):210, 215

               
               
               Conread position:3-303
               
               
               Cow position:chr2:78754371-78754669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 34

               
               
               Conread position:3-310
               
               
               Cow position:chr2:78755025-78755332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:3-310
               
               
               Cow position:chr2:82799971-82800278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:3-313
               
               
               Cow position:chr2:82800139-82800449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 35

               
               
               Conread position:3-320
               
               
               Cow position:chr2:82799467-82799784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-233
               
               
               Cow position:chr2:82800235-82800453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 99

               
               
               Conread position:41-310
               
               
               Cow position:chr2:78754811-78755080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-317
               
               
               Cow position:chr2:82799457-82799697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-310
               
               
               Cow position:chr21:34222989-34222720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:1-239
               
               
               Cow position:chr22:11641217-11641455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 116

               
               
               Conread position:1-240
               
               
               Cow position:chr22:12475526-12475287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-240
               
               
               Cow position:chr22:12499733-12499972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-262
               
               
               Cow position:chr22:14430005-14430266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 115

               
               
               Conread position:1-264
               
               
               Cow position:chr22:11666470-11666734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 111

               
               
               Conread position:1-268
               
               
               Cow position:chr22:11701124-11701391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):124, 112

               
               
               Conread position:1-271
               
               
               Cow position:chr22:14429669-14429939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-271
               
               
               Cow position:chr22:14430089-14430359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 111

               
               
               Conread position:1-275
               
               
               Cow position:chr22:14468082-14468356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):200, 181

               
               
               Conread position:1-282
               
               
               Cow position:chr22:14429837-14430118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 112

               
               
               Conread position:1-307
               
               
               Cow position:chr22:12385477-12385169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:1-309
               
               
               Cow position:chr22:12476366-12476058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr22:12431717-12431408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr22:11640713-11641024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr22:11640797-11641108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):258, 267

               
               
               Conread position:1-312
               
               
               Cow position:chr22:11640965-11641276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12385391-12385080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12385561-12385248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):102, 112

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12385645-12385332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):232, 282

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12399317-12399006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 285

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12399653-12399342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12431801-12431490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12431885-12431574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):142, 147

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12431969-12431658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12458417-12458106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12498893-12499204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr22:12499481-12499792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr22:12399149-12398834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr22:12399233-12398918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr22:12399821-12399506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr22:12499397-12499712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr22:12399485-12399169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:1-317
               
               
               Cow position:chr22:12431633-12431317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:1-317
               
               
               Cow position:chr22:12475946-12475630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:1-320
               
               
               Cow position:chr22:12399065-12398746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr22:12399899-12399586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr22:12432305-12431986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):176, 198

               
               
               Conread position:1-320
               
               
               Cow position:chr22:12458249-12457930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:1-320
               
               
               Cow position:chr22:12475862-12475543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr22:12476030-12475711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr22:12476114-12475795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-339
               
               
               Cow position:chr22:12431297-12430961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):318, 0

               
               
               Conread position:2-320
               
               
               Cow position:chr22:12399568-12399250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 101

               
               
               Conread position:3-256
               
               
               Cow position:chr22:12419271-12419019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:3-262
               
               
               Cow position:chr22:12385305-12385046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-262
               
               
               Cow position:chr22:14429923-14430182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):127, 112

               
               
               Conread position:3-268
               
               
               Cow position:chr22:11640883-11641148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:3-268
               
               
               Cow position:chr22:12418834-12418569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:3-268
               
               
               Cow position:chr22:12430875-12430610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-269
               
               
               Cow position:chr22:12432219-12431953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:3-269
               
               
               Cow position:chr22:12432387-12432121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-269
               
               
               Cow position:chr22:14468000-14468266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-273
               
               
               Cow position:chr22:46654458-46654728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:3-274
               
               
               Cow position:chr22:46654122-46654393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:3-303
               
               
               Cow position:chr22:12418750-12418450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-303
               
               
               Cow position:chr22:46654542-46654842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-307
               
               
               Cow position:chr22:12458499-12458195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:3-308
               
               
               Cow position:chr22:12458331-12458026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):208, 203

               
               
               Conread position:3-309
               
               
               Cow position:chr22:12418918-12418612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):208, 203

               
               
               Conread position:3-309
               
               
               Cow position:chr22:12419002-12418696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:3-310
               
               
               Cow position:chr22:12431043-12430736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-311
               
               
               Cow position:chr22:12499651-12499959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr22:11640631-11640940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr22:11641051-11641360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12475608-12475299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12475692-12475383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12476196-12475887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12476280-12475971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):284, 273

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12498979-12499288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12499063-12499372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr22:12499567-12499876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 287

               
               
               Conread position:3-313
               
               
               Cow position:chr22:12432135-12431825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr22:12431379-12431066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr22:12431547-12431234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:3-316
               
               
               Cow position:chr22:12458583-12458270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr22:12499315-12499629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:3-319
               
               
               Cow position:chr22:12385221-12384905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr22:12399399-12399082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:3-320
               
               
               Cow position:chr22:12399735-12399418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr22:12431127-12430810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr22:12475776-12475459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-323
               
               
               Cow position:chr22:11701378-11701697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:3-327
               
               
               Cow position:chr22:12458079-12457755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:3-327
               
               
               Cow position:chr22:46654374-46654699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):46, 42

               
               
               Conread position:9-310
               
               
               Cow position:chr22:11641141-11641442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):181, 190

               
               
               Conread position:14-312
               
               
               Cow position:chr22:12432460-12432162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):198, 191

               
               
               Conread position:22-271
               
               
               Cow position:chr22:14467934-14468184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 181

               
               
               Conread position:39-299
               
               
               Cow position:chr22:11666676-11666936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:40-268
               
               
               Cow position:chr22:12419318-12419090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-308
               
               
               Cow position:chr22:12476411-12476143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-312
               
               
               Cow position:chr22:12498848-12499120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-320
               
               
               Cow position:chr22:12385690-12385410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:41-320
               
               
               Cow position:chr22:12431173-12430894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-271
               
               
               Cow position:chr22:12458124-12457895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:42-309
               
               
               Cow position:chr22:12432012-12431745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-320
               
               
               Cow position:chr22:12499270-12499548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:42-321
               
               
               Cow position:chr22:12431424-12431145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):219, 226

               
               
               Conread position:42-330
               
               
               Cow position:chr22:12430920-12430633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):277, 0

               
               
               Conread position:43-312
               
               
               Cow position:chr22:12458627-12458358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-271
               
               
               Cow position:chr22:14429800-14430023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-312
               
               
               Cow position:chr22:14429642-14429896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-312
               
               
               Cow position:chr22:12399918-12399678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:1-152
               
               
               Cow position:chr23:24560279-24560128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-228
               
               
               Cow position:chr23:25660510-25660737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-254
               
               
               Cow position:chr23:24626499-24626750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):236, 0

               
               
               Conread position:1-306
               
               
               Cow position:chr23:24654140-24654444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):258, 0

               
               
               Conread position:1-307
               
               
               Cow position:chr23:25698633-25698327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:1-310
               
               
               Cow position:chr23:25724104-25723795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):272, 284

               
               
               Conread position:1-312
               
               
               Cow position:chr23:24535854-24535543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr23:24536022-24535711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr23:24547055-24546744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:1-312
               
               
               Cow position:chr23:24560867-24560556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr23:25626137-25626448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr23:25626557-25626865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr23:24547307-24546992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 273

               
               
               Conread position:1-316
               
               
               Cow position:chr23:24639239-24639554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:1-316
               
               
               Cow position:chr23:25660258-25660573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):133, 128

               
               
               Conread position:1-317
               
               
               Cow position:chr23:24522545-24522229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):277, 272

               
               
               Conread position:1-332
               
               
               Cow position:chr23:24535938-24535604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):273, 279

               
               
               Conread position:1-339
               
               
               Cow position:chr23:24522710-24522377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):138, 99

               
               
               Conread position:2-204
               
               
               Cow position:chr23:24522376-24522174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 113

               
               
               Conread position:2-272
               
               
               Cow position:chr23:24522460-24522190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-309
               
               
               Cow position:chr23:25626639-25626946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):184, 193

               
               
               Conread position:2-310
               
               
               Cow position:chr23:24639324-24639632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 65

               
               
               Conread position:3-236
               
               
               Cow position:chr23:24546885-24546652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-253
               
               
               Cow position:chr23:24639829-24640079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-299
               
               
               Cow position:chr23:25626724-25627020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):115, 99

               
               
               Conread position:3-302
               
               
               Cow position:chr23:25698379-25698080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:3-307
               
               
               Cow position:chr23:24521953-24521654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):182, 225

               
               
               Conread position:3-307
               
               
               Cow position:chr23:24546969-24546665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-307
               
               
               Cow position:chr23:24626417-24626721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-307
               
               
               Cow position:chr23:25626223-25626527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-307
               
               
               Cow position:chr23:25724018-25723714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:3-310
               
               
               Cow position:chr23:24547221-24546914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):275, 271

               
               
               Conread position:3-310
               
               
               Cow position:chr23:24560529-24560222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr23:24654058-24654365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr23:25626055-25626362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr23:24560697-24560388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr23:24626333-24626642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):275, 270

               
               
               Conread position:3-312
               
               
               Cow position:chr23:24639409-24639718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:3-312
               
               
               Cow position:chr23:24639493-24639802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):256, 265

               
               
               Conread position:3-312
               
               
               Cow position:chr23:24639577-24639886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-315
               
               
               Cow position:chr23:25660428-25660740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr23:24639745-24640058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr23:24547137-24546823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 271

               
               
               Conread position:3-317
               
               
               Cow position:chr23:24560613-24560299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr23:25698547-25698230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):224, 239

               
               
               Conread position:3-321
               
               
               Cow position:chr23:24560445-24560127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 277

               
               
               Conread position:3-333
               
               
               Cow position:chr23:24639661-24639990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):314, 0

               
               
               Conread position:14-310
               
               
               Cow position:chr23:25625982-25626278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):247, 266

               
               
               Conread position:15-307
               
               
               Cow position:chr23:24535756-24535464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):259, 265

               
               
               Conread position:19-310
               
               
               Cow position:chr23:24626264-24626556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:27-312
               
               
               Cow position:chr23:24626201-24626474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:33-316
               
               
               Cow position:chr23:25698685-25698402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):80, 70

               
               
               Conread position:43-320
               
               
               Cow position:chr23:24639197-24639474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):184, 195

               
               
               Conread position:56-312
               
               
               Cow position:chr23:24547336-24547080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):222, 218

               
               
               Conread position:63-312
               
               
               Cow position:chr23:24560889-24560640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-320
               
               
               Cow position:chr23:24522567-24522310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-320
               
               
               Cow position:chr23:24654047-24654291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-310
               
               
               Cow position:chr23:25625961-25626194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-312
               
               
               Cow position:chr23:25724111-25723877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-312
               
               
               Cow position:chr23:24536023-24535795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-320
               
               
               Cow position:chr23:25660173-25660409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):217, 213

               
               
               Conread position:142-316
               
               
               Cow position:chr23:24547334-24547160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:156-312
               
               
               Cow position:chr23:24654043-24654199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr24:16986452-16986655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 108

               
               
               Conread position:1-310
               
               
               Cow position:chr24:17070733-17071042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 105

               
               
               Conread position:1-312
               
               
               Cow position:chr24:17035936-17035625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 105

               
               
               Conread position:1-312
               
               
               Cow position:chr24:17036356-17036045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr24:17078071-17077760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr24:17070649-17070965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr24:17013186-17013505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):116, 103

               
               
               Conread position:1-320
               
               
               Cow position:chr24:17035684-17035365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr24:17036605-17036289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:3-312
               
               
               Cow position:chr24:17036102-17035793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr24:17036270-17035961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr24:17036522-17036213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr24:17070483-17070792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr24:17070567-17070876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr24:17077817-17077508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:3-312
               
               
               Cow position:chr24:17077985-17077676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-316
               
               
               Cow position:chr24:17078237-17077924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr24:17035262-17034948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr24:17077901-17077587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 35

               
               
               Conread position:3-317
               
               
               Cow position:chr24:17078153-17077839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-330
               
               
               Cow position:chr24:17035430-17035104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 265

               
               
               Conread position:9-312
               
               
               Cow position:chr24:17036180-17035877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-307
               
               
               Cow position:chr24:17035335-17035042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 24

               
               
               Conread position:14-312
               
               
               Cow position:chr24:17035503-17035205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):197, 192

               
               
               Conread position:14-316
               
               
               Cow position:chr24:17036007-17035705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-316
               
               
               Cow position:chr24:17036427-17036125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):249, 236

               
               
               Conread position:14-320
               
               
               Cow position:chr24:17035587-17035281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-320
               
               
               Cow position:chr24:17035754-17035449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:27-312
               
               
               Cow position:chr24:17035826-17035541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-312
               
               
               Cow position:chr24:17070437-17070708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-320
               
               
               Cow position:chr24:17013147-17013421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-320
               
               
               Cow position:chr24:17070387-17070632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:84-282
               
               
               Cow position:chr24:16986451-16986649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-166
               
               
               Cow position:chr25:33156947-33156783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:1-262
               
               
               Cow position:chr25:33305380-33305119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):185, 62

               
               
               Conread position:1-272
               
               
               Cow position:chr25:366747-367018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):203, 209

               
               
               Conread position:1-296
               
               
               Cow position:chr25:34433627-34433921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):141, 132

               
               
               Conread position:1-301
               
               
               Cow position:chr25:34714224-34714524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:1-307
               
               
               Cow position:chr25:33298501-33298807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:1-308
               
               
               Cow position:chr25:33299341-33299648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:1-310
               
               
               Cow position:chr25:23420405-23420714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):272, 279

               
               
               Conread position:1-310
               
               
               Cow position:chr25:34433546-34433852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:1-310
               
               
               Cow position:chr25:34769934-34769625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-311
               
               
               Cow position:chr25:23420489-23420799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr25:33157115-33156804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:1-312
               
               
               Cow position:chr25:33157451-33157140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr25:34714140-34714451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):189, 196

               
               
               Conread position:1-312
               
               
               Cow position:chr25:34769850-34769539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-313
               
               
               Cow position:chr25:34769514-34769202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:1-316
               
               
               Cow position:chr25:346470-346785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):164, 170

               
               
               Conread position:1-316
               
               
               Cow position:chr25:36800989-36801304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):100, 105

               
               
               Conread position:1-320
               
               
               Cow position:chr25:23420321-23420640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr25:33127740-33128059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr25:34769598-34769279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr25:34770018-34769699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-321
               
               
               Cow position:chr25:34447296-34447616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-321
               
               
               Cow position:chr25:34447548-34447859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:1-327
               
               
               Cow position:chr25:33299509-33299836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:2-183
               
               
               Cow position:chr25:34433043-34433224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):142, 146

               
               
               Conread position:2-262
               
               
               Cow position:chr25:36800738-36800998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:2-272
               
               
               Cow position:chr25:18642148-18641875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):79, 196

               
               
               Conread position:2-307
               
               
               Cow position:chr25:33299426-33299731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):175, 194

               
               
               Conread position:2-307
               
               
               Cow position:chr25:34713973-34714278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:2-308
               
               
               Cow position:chr25:33298586-33298892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:2-310
               
               
               Cow position:chr25:34447045-34447353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-211
               
               
               Cow position:chr25:346640-346848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr25:23420659-23420879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-228
               
               
               Cow position:chr25:33145206-33145431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 111

               
               
               Conread position:3-250
               
               
               Cow position:chr25:33157029-33156783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:3-259
               
               
               Cow position:chr25:22235853-22236109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):119, 111

               
               
               Conread position:3-262
               
               
               Cow position:chr25:33299259-33299518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:3-268
               
               
               Cow position:chr25:33299091-33299356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 103

               
               
               Conread position:3-285
               
               
               Cow position:chr25:34447466-34447746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:3-307
               
               
               Cow position:chr25:33299007-33299311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:3-307
               
               
               Cow position:chr25:34446962-34447266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-307
               
               
               Cow position:chr25:34732080-34731776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 103

               
               
               Conread position:3-307
               
               
               Cow position:chr25:36801651-36801955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):267, 277

               
               
               Conread position:3-308
               
               
               Cow position:chr25:326521-326826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 111

               
               
               Conread position:3-308
               
               
               Cow position:chr25:33298839-33299144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):183, 193

               
               
               Conread position:3-308
               
               
               Cow position:chr25:33299175-33299480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:3-308
               
               
               Cow position:chr25:36801567-36801872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):171, 193

               
               
               Conread position:3-310
               
               
               Cow position:chr25:33127826-33128133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:3-310
               
               
               Cow position:chr25:33127910-33128217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr25:33144873-33145177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:3-310
               
               
               Cow position:chr25:33298923-33299230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:3-310
               
               
               Cow position:chr25:34447130-34447437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr25:34447382-34447689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 113

               
               
               Conread position:3-312
               
               
               Cow position:chr25:33157197-33156888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:3-312
               
               
               Cow position:chr25:33157281-33156972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr25:33157365-33157056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr25:34769680-34769371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr25:34769764-34769455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr25:34770100-34769791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr25:34447214-34447528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):290, 280

               
               
               Conread position:3-317
               
               
               Cow position:chr25:36800655-36800969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:3-321
               
               
               Cow position:chr25:34714058-34714376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):212, 217

               
               
               Conread position:6-229
               
               
               Cow position:chr25:327035-327257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:20-320
               
               
               Cow position:chr25:34713823-34714123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):202, 186

               
               
               Conread position:21-312
               
               
               Cow position:chr25:18642213-18641919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):144, 192

               
               
               Conread position:26-258
               
               
               Cow position:chr25:34432983-34433215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):118, 122

               
               
               Conread position:38-312
               
               
               Cow position:chr25:34713925-34714199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):100, 76

               
               
               Conread position:38-316
               
               
               Cow position:chr25:33305425-33305150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:40-300
               
               
               Cow position:chr25:34433501-34433758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:40-317
               
               
               Cow position:chr25:34770147-34769870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:41-312
               
               
               Cow position:chr25:326985-327256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 73

               
               
               Conread position:42-310
               
               
               Cow position:chr25:33157494-33157226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):71, 65

               
               
               Conread position:42-310
               
               
               Cow position:chr25:33298710-33298978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 64

               
               
               Conread position:49-286
               
               
               Cow position:chr25:33145168-33145405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-300
               
               
               Cow position:chr25:34446927-34447175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-310
               
               
               Cow position:chr25:326494-326744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-316
               
               
               Cow position:chr25:33144846-33145099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):171, 165

               
               
               Conread position:64-310
               
               
               Cow position:chr25:326924-327170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:77-312
               
               
               Cow position:chr25:33127732-33127967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-312
               
               
               Cow position:chr25:23420319-23420548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:110-320
               
               
               Cow position:chr25:34432983-34433193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:121-312
               
               
               Cow position:chr25:34770150-34769959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:126-312
               
               
               Cow position:chr25:33157494-33157308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-261
               
               
               Cow position:chr27:21615665-21615405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):257, 104

               
               
               Conread position:1-312
               
               
               Cow position:chr27:21615749-21615439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr27:21616174-21615858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):147, 75

               
               
               Conread position:1-312
               
               
               Cow position:chr27:21616258-21615942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):231, 153

               
               
               Conread position:3-311
               
               
               Cow position:chr27:21615998-21615691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):171, 51

               
               
               Conread position:3-312
               
               
               Cow position:chr27:21615915-21615606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 103

               
               
               Conread position:38-312
               
               
               Cow position:chr27:21615796-21615523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):229, 0

               
               
               Conread position:1-240
               
               
               Cow position:chr28:9253377-9253617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):227, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr28:7810286-7810533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):90, 105

               
               
               Conread position:1-251
               
               
               Cow position:chr28:7810697-7810947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-307
               
               
               Cow position:chr28:7757606-7757912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:1-307
               
               
               Cow position:chr28:7758026-7758332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:1-308
               
               
               Cow position:chr28:7810529-7810836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:1-310
               
               
               Cow position:chr28:7757438-7757747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):258, 279

               
               
               Conread position:1-310
               
               
               Cow position:chr28:7757774-7758083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):185, 195

               
               
               Conread position:1-310
               
               
               Cow position:chr28:7810613-7810922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:1-310
               
               
               Cow position:chr28:9253041-9253350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr28:9253125-9253434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):277, 273

               
               
               Conread position:1-310
               
               
               Cow position:chr28:9290274-9290581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:1-310
               
               
               Cow position:chr28:9290358-9290665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr28:9299006-9299300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):269, 26

               
               
               Conread position:1-316
               
               
               Cow position:chr28:7810454-7810760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):269, 82

               
               
               Conread position:1-317
               
               
               Cow position:chr28:11334031-11333715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:1-320
               
               
               Cow position:chr28:7758430-7758749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):258, 279

               
               
               Conread position:1-320
               
               
               Cow position:chr28:7758514-7758831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 105

               
               
               Conread position:1-320
               
               
               Cow position:chr28:7810370-7810680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:1-320
               
               
               Cow position:chr28:34679538-34679216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:1-328
               
               
               Cow position:chr28:34679454-34679121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 70

               
               
               Conread position:2-256
               
               
               Cow position:chr28:9290442-9290695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):107, 25

               
               
               Conread position:2-262
               
               
               Cow position:chr28:7757943-7758203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:2-310
               
               
               Cow position:chr28:7757691-7757999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):268, 278

               
               
               Conread position:2-310
               
               
               Cow position:chr28:9253294-9253602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):272, 278

               
               
               Conread position:3-262
               
               
               Cow position:chr28:7757860-7758119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):99, 103

               
               
               Conread position:3-262
               
               
               Cow position:chr28:9298925-9299182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-272
               
               
               Cow position:chr28:34695936-34696205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:3-286
               
               
               Cow position:chr28:34696020-34696303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 35

               
               
               Conread position:3-308
               
               
               Cow position:chr28:9299245-9299550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:3-310
               
               
               Cow position:chr28:7757524-7757831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr28:9253211-9253518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:3-312
               
               
               Cow position:chr28:34696104-34696413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 111

               
               
               Conread position:3-316
               
               
               Cow position:chr28:11334113-11333800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):257, 265

               
               
               Conread position:4-307
               
               
               Cow position:chr28:9298675-9298977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:5-310
               
               
               Cow position:chr28:9252961-9253266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):273, 269

               
               
               Conread position:14-271
               
               
               Cow position:chr28:34679607-34679354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:15-312
               
               
               Cow position:chr28:34696200-34696497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:23-316
               
               
               Cow position:chr28:11333841-11333548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:27-307
               
               
               Cow position:chr28:9299188-9299465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:39-310
               
               
               Cow position:chr28:7757392-7757663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-312
               
               
               Cow position:chr28:9290231-9290499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:42-302
               
               
               Cow position:chr28:7758387-7758647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-310
               
               
               Cow position:chr28:11334154-11333890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-312
               
               
               Cow position:chr28:33210227-33210477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-299
               
               
               Cow position:chr28:7757334-7757568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):205, 212

               
               
               Conread position:83-272
               
               
               Cow position:chr28:7810284-7810473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr29:39627069-39626847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr29:39627569-39627259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr29:39627316-39627012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:3-329
               
               
               Cow position:chr29:39627151-39626827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:9-311
               
               
               Cow position:chr29:39627477-39627179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):249, 9

               
               
               Conread position:16-313
               
               
               Cow position:chr29:39627222-39626925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 88

               
               
               Conread position:1-211
               
               
               Cow position:chr3:68027534-68027744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):124, 114

               
               
               Conread position:1-234
               
               
               Cow position:chr3:68046127-68046358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:1-238
               
               
               Cow position:chr3:62742799-62743032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):85, 105

               
               
               Conread position:1-262
               
               
               Cow position:chr3:62743198-62743460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 108

               
               
               Conread position:1-271
               
               
               Cow position:chr3:68045875-68046145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:1-310
               
               
               Cow position:chr3:62721967-62721658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr3:77351302-77350995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:1-312
               
               
               Cow position:chr3:62722135-62721824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr3:62742384-62742692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):142, 148

               
               
               Conread position:1-312
               
               
               Cow position:chr3:62742552-62742858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr3:68045791-68046102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):126, 114

               
               
               Conread position:1-315
               
               
               Cow position:chr3:68027114-68027428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr3:62722051-62721735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr3:68027198-68027514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 147

               
               
               Conread position:1-317
               
               
               Cow position:chr3:68045707-68046023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):280, 272

               
               
               Conread position:1-320
               
               
               Cow position:chr3:62722303-62721984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr3:62743035-62743349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr3:68045959-68046278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-321
               
               
               Cow position:chr3:62742301-62742620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1-321
               
               
               Cow position:chr3:62742884-62743182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-322
               
               
               Cow position:chr3:62721883-62721562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-333
               
               
               Cow position:chr3:62722219-62721888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):316, 0

               
               
               Conread position:2-295
               
               
               Cow position:chr3:68027451-68027744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-307
               
               
               Cow position:chr3:68046044-68046349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr3:68027283-68027593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):271, 280

               
               
               Conread position:2-312
               
               
               Cow position:chr3:68045624-68045934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):271, 285

               
               
               Conread position:2-361
               
               
               Cow position:chr3:62742718-62743077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):168, 31

               
               
               Conread position:3-320
               
               
               Cow position:chr3:68027368-68027685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):255, 265

               
               
               Conread position:5-312
               
               
               Cow position:chr3:62743118-62743425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:38-307
               
               
               Cow position:chr3:62742254-62742522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:38-310
               
               
               Cow position:chr3:62742670-62742941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):214, 79

               
               
               Conread position:39-271
               
               
               Cow position:chr3:77350936-77350704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-308
               
               
               Cow position:chr3:68027069-68027337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-320
               
               
               Cow position:chr3:62722348-62722068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:44-312
               
               
               Cow position:chr3:68026990-68027257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:52-312
               
               
               Cow position:chr3:16020467-16020214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):92, 53

               
               
               Conread position:66-312
               
               
               Cow position:chr3:68045605-68045850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:108-316
               
               
               Cow position:chr3:68045562-68045770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:121-309
               
               
               Cow position:chr3:62742253-62742440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:4-185
               
               
               Cow position:chr5:34281450-34281630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:1-317
               
               
               Cow position:chr6:49340510-49340826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):209, 205

               
               
               Conread position:1-317
               
               
               Cow position:chr6:49340846-49341162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr6:49340762-49341081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 107

               
               
               Conread position:2-281
               
               
               Cow position:chr6:49396316-49396595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr6:49396154-49396458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):272, 74

               
               
               Conread position:3-277
               
               
               Cow position:chr6:49341184-49341457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):261, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr6:49396233-49396540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:3-310
               
               
               Cow position:chr6:49396569-49396876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr6:49340428-49340737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr6:49340680-49340989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr6:49340932-49341241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr6:49341016-49341325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):270, 281

               
               
               Conread position:3-316
               
               
               Cow position:chr6:49341100-49341413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 199

               
               
               Conread position:3-320
               
               
               Cow position:chr6:49340596-49340913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr6:49396485-49396802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):284, 291

               
               
               Conread position:7-316
               
               
               Cow position:chr6:49362535-49362832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):253, 95

               
               
               Conread position:8-321
               
               
               Cow position:chr6:49396658-49396971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-312
               
               
               Cow position:chr6:49340362-49340653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-240
               
               
               Cow position:chr7:1015213-1015452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-255
               
               
               Cow position:chr7:1438439-1438693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:1-265
               
               
               Cow position:chr7:1439913-1440176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1-267
               
               
               Cow position:chr7:1014379-1014645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-307
               
               
               Cow position:chr7:1439492-1439800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):185, 95

               
               
               Conread position:1-310
               
               
               Cow position:chr7:1014877-1015186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr7:3179803-3180114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 277

               
               
               Conread position:1-312
               
               
               Cow position:chr7:3180307-3180618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr7:8324839-8325150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):126, 110

               
               
               Conread position:1-312
               
               
               Cow position:chr7:8325763-8326074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):286, 273

               
               
               Conread position:1-312
               
               
               Cow position:chr7:18390268-18390579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr7:18390352-18390663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):272, 279

               
               
               Conread position:1-312
               
               
               Cow position:chr7:42879002-42878691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr7:42879086-42878775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 195

               
               
               Conread position:1-312
               
               
               Cow position:chr7:42879422-42879111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:1-316
               
               
               Cow position:chr7:1438355-1438670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 104

               
               
               Conread position:1-316
               
               
               Cow position:chr7:3179971-3180286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr7:1014793-1015109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr7:3180391-3180707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr7:18390016-18390332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 118

               
               
               Conread position:1-317
               
               
               Cow position:chr7:18390100-18390416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:1-320
               
               
               Cow position:chr7:3180055-3180374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr7:42878834-42878515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):112, 104

               
               
               Conread position:1-330
               
               
               Cow position:chr7:42878582-42878251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:1-331
               
               
               Cow position:chr7:3180475-3180806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 0

               
               
               Conread position:2-269
               
               
               Cow position:chr7:1439997-1440264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-312
               
               
               Cow position:chr7:42879169-42878859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 278

               
               
               Conread position:2-312
               
               
               Cow position:chr7:42879253-42878943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 275

               
               
               Conread position:2-316
               
               
               Cow position:chr7:1014296-1014610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-316
               
               
               Cow position:chr7:1439831-1440143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:3-262
               
               
               Cow position:chr7:1015131-1015390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-262
               
               
               Cow position:chr7:18390186-18390445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-268
               
               
               Cow position:chr7:3180141-3180406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-271
               
               
               Cow position:chr7:18390438-18390706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr7:1014465-1014766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 102

               
               
               Conread position:3-310
               
               
               Cow position:chr7:3180225-3180532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 192

               
               
               Conread position:3-310
               
               
               Cow position:chr7:11601079-11600772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr7:42878748-42878441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):5, 26

               
               
               Conread position:3-312
               
               
               Cow position:chr7:42878916-42878607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr7:3179721-3180035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:3-317
               
               
               Cow position:chr7:42878664-42878350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 277

               
               
               Conread position:3-320
               
               
               Cow position:chr7:1014963-1015280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr7:1015047-1015364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr7:11600827-11600510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr7:11600995-11600678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):129, 96

               
               
               Conread position:3-326
               
               
               Cow position:chr7:11600743-11600420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):106, 101

               
               
               Conread position:3-333
               
               
               Cow position:chr7:1014711-1015040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 0

               
               
               Conread position:9-330
               
               
               Cow position:chr7:11601156-11600837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:26-262
               
               
               Cow position:chr7:8277811-8278047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 84

               
               
               Conread position:33-275
               
               
               Cow position:chr7:8325123-8325365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 73

               
               
               Conread position:33-290
               
               
               Cow position:chr7:8243692-8243950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):249, 0

               
               
               Conread position:33-312
               
               
               Cow position:chr7:1014657-1014936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:34-268
               
               
               Cow position:chr7:8277735-8277969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:34-272
               
               
               Cow position:chr7:8325376-8325614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):93, 75

               
               
               Conread position:40-312
               
               
               Cow position:chr7:8243447-8243719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):86, 74

               
               
               Conread position:40-320
               
               
               Cow position:chr7:11601210-11600930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 72

               
               
               Conread position:41-262
               
               
               Cow position:chr7:1439448-1439667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:41-275
               
               
               Cow position:chr7:8325299-8325533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 66

               
               
               Conread position:41-312
               
               
               Cow position:chr7:3179927-3180198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-312
               
               
               Cow position:chr7:8277658-8277929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:41-331
               
               
               Cow position:chr7:8325887-8326181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:42-272
               
               
               Cow position:chr7:11434508-11434278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 75

               
               
               Conread position:42-275
               
               
               Cow position:chr7:8325048-8325281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):165, 140

               
               
               Conread position:46-316
               
               
               Cow position:chr7:11600868-11600598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-271
               
               
               Cow position:chr7:1014273-1014481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-320
               
               
               Cow position:chr7:42879276-42879019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-242
               
               
               Cow position:chr8:48407020-48406779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:1-262
               
               
               Cow position:chr8:45201712-45201973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-302
               
               
               Cow position:chr8:6958058-6957758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 269

               
               
               Conread position:1-309
               
               
               Cow position:chr8:46816319-46816627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:1-310
               
               
               Cow position:chr8:45200956-45201265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr8:46815983-46816292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr8:48407104-48406795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chr8:48407188-48406879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):260, 267

               
               
               Conread position:1-311
               
               
               Cow position:chr8:46816991-46817301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr8:45201376-45201687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr8:46816151-46816462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr8:46816403-46816714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):269, 279

               
               
               Conread position:1-312
               
               
               Cow position:chr8:46816571-46816882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chr8:46816823-46817134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 279

               
               
               Conread position:1-316
               
               
               Cow position:chr8:48407524-48407209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chr8:48407608-48407293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:1-317
               
               
               Cow position:chr8:45201040-45201356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr8:46816655-46816971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-317
               
               
               Cow position:chr8:46817075-46817391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 284

               
               
               Conread position:1-320
               
               
               Cow position:chr8:45201208-45201527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr8:45201292-45201611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):272, 279

               
               
               Conread position:1-320
               
               
               Cow position:chr8:48406684-48406365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chr8:55580844-55581163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-310
               
               
               Cow position:chr8:45201125-45201433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:3-164
               
               
               Cow position:chr8:48406514-48406353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr8:46816489-46816796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:3-310
               
               
               Cow position:chr8:46816741-46817048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):212, 217

               
               
               Conread position:3-310
               
               
               Cow position:chr8:46816909-46817216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-310
               
               
               Cow position:chr8:55580930-55581237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr8:45201546-45201855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr8:46816069-46816378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr8:46816237-46816546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr8:55581266-55581575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-312
               
               
               Cow position:chr8:55581350-55581659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-315
               
               
               Cow position:chr8:55581182-55581494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-317
               
               
               Cow position:chr8:48407270-48406956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):89, 97

               
               
               Conread position:3-317
               
               
               Cow position:chr8:48407438-48407124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):256, 265

               
               
               Conread position:3-320
               
               
               Cow position:chr8:48406934-48406617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):108, 103

               
               
               Conread position:3-320
               
               
               Cow position:chr8:55581014-55581331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chr8:55581098-55581415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-321
               
               
               Cow position:chr8:55581434-55581752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-330
               
               
               Cow position:chr8:45201630-45201956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):319, 0

               
               
               Conread position:4-312
               
               
               Cow position:chr8:46815899-46816210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:7-320
               
               
               Cow position:chr8:48406761-48406450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:33-316
               
               
               Cow position:chr8:48407324-48407041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):142, 150

               
               
               Conread position:46-312
               
               
               Cow position:chr8:48407647-48407381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):232, 228

               
               
               Conread position:65-310
               
               
               Cow position:chr8:45200936-45201181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-312
               
               
               Cow position:chr8:6958059-6957831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-249
               
               
               Cow position:chrX:29044902-29044654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-256
               
               
               Cow position:chrX:25310332-25310586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):248, 0

               
               
               Conread position:1-273
               
               
               Cow position:chrX:25310248-25310520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:1-296
               
               
               Cow position:chrX:29045721-29045426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chrX:25309744-25310053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:1-310
               
               
               Cow position:chrX:25309828-25310137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chrX:25310080-25310389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:1-310
               
               
               Cow position:chrX:29044986-29044677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-310
               
               
               Cow position:chrX:29045238-29044929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:1-311
               
               
               Cow position:chrX:25324809-25324499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chrX:25324977-25324666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chrX:25325229-25324918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-312
               
               
               Cow position:chrX:25325313-25325002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-316
               
               
               Cow position:chrX:25309912-25310227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 27

               
               
               Conread position:1-317
               
               
               Cow position:chrX:25324725-25324409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:1-320
               
               
               Cow position:chrX:25325061-25324742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:1-320
               
               
               Cow position:chrX:25325397-25325078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:1-320
               
               
               Cow position:chrX:25325481-25325162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-320
               
               
               Cow position:chrX:25325565-25325246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:1-320
               
               
               Cow position:chrX:25325733-25325414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-320
               
               
               Cow position:chrX:29045153-29044835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-268
               
               
               Cow position:chrX:25324639-25324374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):141, 145

               
               
               Conread position:3-310
               
               
               Cow position:chrX:25324891-25324584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:3-310
               
               
               Cow position:chrX:29045068-29044761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 271

               
               
               Conread position:3-312
               
               
               Cow position:chrX:25325143-25324834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-320
               
               
               Cow position:chrX:25309998-25310315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:6-320
               
               
               Cow position:chrX:29045316-29045003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):268, 32

               
               
               Conread position:15-312
               
               
               Cow position:chrX:25325635-25325338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:33-310
               
               
               Cow position:chrX:29045773-29045496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):239, 247

               
               
               Conread position:39-312
               
               
               Cow position:chrX:25325779-25325506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):153, 158

               
               
               Conread position:39-320
               
               
               Cow position:chrX:25310202-25310483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):72, 78

               
               
               Conread position:41-310
               
               
               Cow position:chrX:25309700-25309969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:43-310
               
               
               Cow position:chrX:29045361-29045097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:53-333
               
               
               Cow position:chrX:29045837-29045558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:118-310
               
               
               Cow position:chrX:25309693-25309885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0
Conread position:	1-271
Cow position:	chr10:9010468-9010198 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	176
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	41, 29
Conread position:	1-310
Cow position:	chr10:8996656-8996347 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	229
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	1-312
Cow position:	chr10:8996320-8996009 (view UCSC Genome Browser custom track)
Alignm length:	312
Alignm identity:	211
Alignm E-value:	1.00053e-42
Alignm gaps (pig, cow):	0, 0
Conread position:	1-317
Cow position:	chr10:9031269-9031585 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	217
Alignm E-value:	9.94922e-44
Alignm gaps (pig, cow):	12, 27
Conread position:	3-288
Cow position:	chr10:21939222-21938937 (view UCSC Genome Browser custom track)
Alignm length:	288
Alignm identity:	185
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	9, 18
Conread position:	3-312
Cow position:	chr10:8996822-8996513 (view UCSC Genome Browser custom track)
Alignm length:	311
Alignm identity:	222
Alignm E-value:	0
Alignm gaps (pig, cow):	40, 34
Conread position:	3-317
Cow position:	chr10:9010382-9010068 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	200
Alignm E-value:	9e-31
Alignm gaps (pig, cow):	0, 0
Conread position:	3-333
Cow position:	chr10:8996234-8995914 (view UCSC Genome Browser custom track)
Alignm length:	331
Alignm identity:	216
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	234, 0
Conread position:	4-312
Cow position:	chr10:21939137-21938829 (view UCSC Genome Browser custom track)
Alignm length:	311
Alignm identity:	200
Alignm E-value:	7e-29
Alignm gaps (pig, cow):	10, 25
Conread position:	21-312
Cow position:	chr10:8996888-8996597 (view UCSC Genome Browser custom track)
Alignm length:	292
Alignm identity:	202
Alignm E-value:	9.94922e-44
Alignm gaps (pig, cow):	0, 0
Conread position:	44-310
Cow position:	chr10:9031228-9031494 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	173
Alignm E-value:	7e-28
Alignm gaps (pig, cow):	0, 0
Conread position:	92-310
Cow position:	chr10:8996901-8996683 (view UCSC Genome Browser custom track)
Alignm length:	220
Alignm identity:	147
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	117, 106
Conread position:	1-268
Cow position:	chr11:74554999-74554732 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	191
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	0, 0
Conread position:	3-176
Cow position:	chr11:74554325-74554154 (view UCSC Genome Browser custom track)
Alignm length:	174
Alignm identity:	122
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	152, 0
Conread position:	3-271
Cow position:	chr11:74554745-74554477 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	177
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	0, 0
Conread position:	3-315
Cow position:	chr11:74554577-74554265 (view UCSC Genome Browser custom track)
Alignm length:	314
Alignm identity:	212
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	41, 28
Conread position:	3-320
Cow position:	chr11:74554493-74554176 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	221
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	2-227
Cow position:	chr13:39984678-39984903 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	155
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	120, 104
Conread position:	2-271
Cow position:	chr13:56334083-56334350 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	175
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	239, 0
Conread position:	2-312
Cow position:	chr13:39984510-39984820 (view UCSC Genome Browser custom track)
Alignm length:	312
Alignm identity:	204
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	88, 96