Cow genome map

Conread name: Ss1.1-rpgl22_k5.5

Conread position: 3-196
Cow position: chr1:39487045-39486862 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 3-206
Cow position: chr1:96361866-96362059 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 3-211
Cow position: chr1:21372714-21372522 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 7-166
Cow position: chr1:95403078-95403234 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 7-210
Cow position: chr1:9441171-9441370 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 179, 57

Conread position: 65-376
Cow position: chr1:37408821-37409137 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 147, 34

Conread position: 12-337
Cow position: chr10:3739529-3739203 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 40

Conread position: 21-526
Cow position: chr10:40623970-40623476 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 339
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 87, 43

Conread position: 29-320
Cow position: chr10:28770853-28771156 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 34

Conread position: 266-526
Cow position: chr10:27743549-27743797 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 113, 27

Conread position: 3-409
Cow position: chr11:47174322-47174741 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 41

Conread position: 7-197
Cow position: chr11:10133062-10132879 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 7-526
Cow position: chr11:24247041-24246508 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 52

Conread position: 3-332
Cow position: chr12:374732-374390 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 113, 56

Conread position: 7-295
Cow position: chr12:23423153-23423432 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 100, 27

Conread position: 65-333
Cow position: chr12:26723651-26723365 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 163, 105

Conread position: 68-331
Cow position: chr12:20221366-20221107 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 215, 102

Conread position: 3-271
Cow position: chr13:51917650-51917385 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 168, 48

Conread position: 7-376
Cow position: chr13:12450332-12449954 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 31

Conread position: 10-337
Cow position: chr13:21117365-21117693 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 130, 28

Conread position: 65-320
Cow position: chr13:41263395-41263659 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 187, 22

Conread position: 3-324
Cow position: chr14:22087802-22088124 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 229
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 241, 49

Conread position: 3-325
Cow position: chr14:4724166-4723845 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 227, 13

Conread position: 63-250
Cow position: chr14:13983199-13983379 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 109, 0

Conread position: 3-190
Cow position: chr16:10186093-10186284 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 110

Conread position: 3-331
Cow position: chr16:46530639-46530974 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 56

Conread position: 10-249
Cow position: chr16:27961808-27961567 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 94, 54

Conread position: 66-526
Cow position: chr16:27144230-27143757 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 35

Conread position: 3-176
Cow position: chr17:24603823-24603990 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 4-374
Cow position: chr18:43024981-43024607 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 55

Conread position: 82-304
Cow position: chr18:24451858-24452097 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 223-516
Cow position: chr18:42786193-42786486 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 35

Conread position: 3-356
Cow position: chr19:32215330-32214972 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 41

Conread position: 76-365
Cow position: chr19:1800029-1800326 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 164, 17

Conread position: 3-333
Cow position: chr2:26194185-26194513 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 61

Conread position: 10-385
Cow position: chr2:36131441-36131057 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 42

Conread position: 63-271
Cow position: chr2:79191662-79191866 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 191, 107

Conread position: 77-236
Cow position: chr2:16282089-16282242 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 3-138
Cow position: chr20:36935946-36935813 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 3-333
Cow position: chr20:27359489-27359161 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 33

Conread position: 10-313
Cow position: chr20:15312983-15313292 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 16

Conread position: 10-333
Cow position: chr20:27192279-27192605 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 49

Conread position: 130-525
Cow position: chr20:36935740-36935345 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 281
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 122, 33

Conread position: 59-330
Cow position: chr21:36446021-36445752 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 7, 42

Conread position: 34-526
Cow position: chr22:40860-41361 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 25

Conread position: 3-387
Cow position: chr23:25398546-25398945 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 278
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 46, 121

Conread position: 64-386
Cow position: chr23:12894345-12894671 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 167, 67

Conread position: 4-526
Cow position: chr24:36849179-36849706 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 55

Conread position: 23-249
Cow position: chr24:7291963-7291733 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 145, 29

Conread position: 56-319
Cow position: chr24:37176361-37176637 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 115, 102

Conread position: 82-237
Cow position: chr24:6133755-6133904 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 3-236
Cow position: chr25:18347120-18346899 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 56, 0

Conread position: 3-230
Cow position: chr26:4266847-4267064 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 13, 0

Conread position: 7-333
Cow position: chr26:29174495-29174838 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 57

Conread position: 65-333
Cow position: chr26:3000075-3000338 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 174, 105

Conread position: 81-332
Cow position: chr26:2954725-2954474 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 86

Conread position: 3-333
Cow position: chr27:4595585-4595259 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 16

Conread position: 10-237
Cow position: chr27:27156804-27157018 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 25-526
Cow position: chr27:8416243-8415757 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 38

Conread position: 3-332
Cow position: chr29:36187684-36188021 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 28

Conread position: 3-376
Cow position: chr3:28151707-28152089 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 41

Conread position: 17-280
Cow position: chr3:1811632-1811884 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 235, 41

Conread position: 43-527
Cow position: chr3:2880132-2879655 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 20

Conread position: 89-523
Cow position: chr3:31080741-31081203 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 5

Conread position: 91-333
Cow position: chr3:83629490-83629249 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 148, 33

Conread position: 10-362
Cow position: chr4:43754565-43754930 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 255
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 223, 50

Conread position: 101-313
Cow position: chr4:57078803-57079011 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 151, 69

Conread position: 3-325
Cow position: chr5:55420819-55421148 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 74, 56

Conread position: 7-150
Cow position: chr5:47052477-47052618 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 19-526
Cow position: chr5:53953089-53952597 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 40

Conread position: 34-183
Cow position: chr5:53687805-53687952 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 25

Conread position: 86-362
Cow position: chr5:12578942-12579224 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 86

Conread position: 3-237
Cow position: chr6:11449853-11450078 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 3-271
Cow position: chr6:38260370-38260641 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 63

Conread position: 4-313
Cow position: chr6:32132934-32132615 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 113, 54

Conread position: 10-169
Cow position: chr6:41636633-41636790 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 17-333
Cow position: chr6:44643564-44643262 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 203, 26

Conread position: 43-202
Cow position: chr6:42045847-42045693 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 65-374
Cow position: chr6:33398462-33398768 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 189, 43

Conread position: 134-513
Cow position: chr6:62314627-62314232 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 269
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 72

Conread position: 277-524
Cow position: chr6:38260946-38261192 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 25

Conread position: 283-526
Cow position: chr6:39423261-39423490 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 119, 56

Conread position: 3-237
Cow position: chr7:51022496-51022726 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 221, 49

Conread position: 67-516
Cow position: chr7:62524925-62524456 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 104

Conread position: 253-486
Cow position: chr7:51633227-51633471 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 82, 181

Conread position: 7-234
Cow position: chr8:23107967-23107749 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 154, 39

Conread position: 91-333
Cow position: chr8:24205110-24204859 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 150, 27

Conread position: 3-518
Cow position: chr9:2105650-2106169 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 56

Conread position: 35-332
Cow position: chr9:26234598-26234290 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 195, 23

Conread position: 67-331
Cow position: chr9:61309793-61310066 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 98, 0

Conread position: 78-324
Cow position: chr9:41856040-41856292 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 176, 90

Conread position: 3-333
Cow position: chrX:42531590-42531919 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 42, 54