Cow genome map
| Conread name: | Ss1.1-rpgl23_j16.5.5 |
| Conread position: | 199-836 |
| Cow position: | chr1:670252-670889 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 97 |
| Conread position: | 205-482 |
| Cow position: | chr1:58912055-58912323 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 484-836 |
| Cow position: | chr1:58914084-58914436 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 339 |
| Conread position: | 214-836 |
| Cow position: | chr10:23111652-23112286 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 546 |
| Conread position: | 666-828 |
| Cow position: | chr10:58180679-58180527 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 205-346 |
| Cow position: | chr11:22464017-22463876 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 369-837 |
| Cow position: | chr11:22463880-22463403 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 71 |
| Conread position: | 202-835 |
| Cow position: | chr13:48320711-48321339 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 601, 336 |
| Conread position: | 207-823 |
| Cow position: | chr13:38970358-38970971 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 596, 163 |
| Conread position: | 205-423 |
| Cow position: | chr14:38536068-38536287 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 206-388 |
| Cow position: | chr14:19995179-19995358 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 298-839 |
| Cow position: | chr14:40015576-40016102 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 42 |
| Conread position: | 379-851 |
| Cow position: | chr14:19995586-19996053 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 263 |
| Conread position: | 436-836 |
| Cow position: | chr14:38536507-38536909 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 206-840 |
| Cow position: | chr15:50671079-50670435 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 104 |
| Conread position: | 201-840 |
| Cow position: | chr16:17037868-17037229 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 602, 226 |
| Conread position: | 204-523 |
| Cow position: | chr16:1175398-1175084 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 225-840 |
| Cow position: | chr16:50937312-50937922 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 175 |
| Conread position: | 285-840 |
| Cow position: | chr16:2660747-2660222 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 128 |
| Conread position: | 538-839 |
| Cow position: | chr16:1174828-1174526 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 0 |
| Conread position: | 204-454 |
| Cow position: | chr17:36789516-36789766 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 356-841 |
| Cow position: | chr17:6137849-6138311 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 96 |
| Conread position: | 205-396 |
| Cow position: | chr18:35368955-35368764 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 206-835 |
| Cow position: | chr18:42854944-42854314 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 597, 0 |
| Conread position: | 412-832 |
| Cow position: | chr18:35368771-35368358 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 54 |
| Conread position: | 204-839 |
| Cow position: | chr19:27614311-27613674 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 204-842 |
| Cow position: | chr19:55281634-55282269 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 604, 483 |
| Conread position: | 205-835 |
| Cow position: | chr19:34431001-34431608 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 59 |
| Conread position: | 206-805 |
| Cow position: | chr19:4572205-4571585 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 431 |
| Conread position: | 213-847 |
| Cow position: | chr19:33521551-33520915 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 0 |
| Conread position: | 201-426 |
| Cow position: | chr2:32166-31947 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 415-838 |
| Cow position: | chr2:31925-31502 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 200 |
| Conread position: | 200-838 |
| Cow position: | chr20:14849713-14849074 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 598, 0 |
| Conread position: | 205-840 |
| Cow position: | chr20:25382838-25382202 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 440 |
| Conread position: | 205-326 |
| Cow position: | chr21:14827254-14827142 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 205-573 |
| Cow position: | chr21:32799984-32799616 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-835 |
| Cow position: | chr21:37511390-37512021 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 598, 0 |
| Conread position: | 205-842 |
| Cow position: | chr21:29806218-29806858 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 315-789 |
| Cow position: | chr21:14826827-14826363 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 90 |
| Conread position: | 205-536 |
| Cow position: | chr22:4555058-4555386 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 205-842 |
| Cow position: | chr22:47421242-47420612 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 598, 558 |
| Conread position: | 205-845 |
| Cow position: | chr22:31399731-31400372 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 42 |
| Conread position: | 513-846 |
| Cow position: | chr22:8529124-8529458 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 525-846 |
| Cow position: | chr22:4555528-4555853 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 333-743 |
| Cow position: | chr24:39781265-39781647 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 20 |
| Conread position: | 728-837 |
| Cow position: | chr24:39781614-39781724 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 205-838 |
| Cow position: | chr25:32192820-32192194 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 593, 222 |
| Conread position: | 198-563 |
| Cow position: | chr26:9458738-9458373 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 199 |
| Conread position: | 198-386 |
| Cow position: | chr28:18383812-18384000 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 446-936 |
| Cow position: | chr28:18384559-18385047 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 194 |
| Conread position: | 204-845 |
| Cow position: | chr29:18357769-18357116 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 213-844 |
| Cow position: | chr29:17429086-17429694 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 590, 79 |
| Conread position: | 204-806 |
| Cow position: | chr3:60258926-60258352 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 205-318 |
| Cow position: | chr3:17991936-17991824 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 373-819 |
| Cow position: | chr3:17991327-17990888 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 391 |
| Conread position: | 489-836 |
| Cow position: | chr3:44609909-44609561 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 0 |
| Conread position: | 683-839 |
| Cow position: | chr4:3983469-3983311 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 141 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 205-833 |
| Cow position: | chr5:16928975-16929584 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 599, 198 |
| Conread position: | 205-833 |
| Cow position: | chr5:45579740-45579123 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 598, 288 |
| Conread position: | 206-761 |
| Cow position: | chr5:40274302-40273759 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 215-842 |
| Cow position: | chr5:39903273-39902641 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 275 |
| Conread position: | 229-854 |
| Cow position: | chr5:22668774-22669399 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 512, 5 |
| Conread position: | 738-858 |
| Cow position: | chr5:40273762-40273641 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 205-830 |
| Cow position: | chr6:65310240-65309633 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 107 |
| Conread position: | 205-837 |
| Cow position: | chr6:42389941-42390542 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 221-604 |
| Cow position: | chr6:35323245-35322882 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 631-743 |
| Cow position: | chr6:35322890-35322777 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 690-837 |
| Cow position: | chr6:50589847-50589995 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 205-835 |
| Cow position: | chr7:29782771-29782141 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 590, 19 |
| Conread position: | 219-827 |
| Cow position: | chr7:39148819-39149417 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 584, 60 |
| Conread position: | 219-851 |
| Cow position: | chr7:5318752-5319381 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 523, 0 |
| Conread position: | 338-835 |
| Cow position: | chr7:39101014-39100521 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 96 |
| Conread position: | 206-407 |
| Cow position: | chr8:61567981-61568183 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 225-693 |
| Cow position: | chr8:52972423-52972885 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 228-814 |
| Cow position: | chr8:31422854-31422289 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 23 |
| Conread position: | 259-404 |
| Cow position: | chr8:26046447-26046591 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 384-533 |
| Cow position: | chr8:26046625-26046765 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 444-840 |
| Cow position: | chr8:61568184-61568583 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 684-832 |
| Cow position: | chr8:52972912-52973062 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 206-551 |
| Cow position: | chr9:59191811-59192157 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 540-830 |
| Cow position: | chr9:59192369-59192664 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 62 |