Cow genome map
| Conread name: | Ss1.1-rpigca0_009159.5.5 |
| Conread position: | 1363-1583 |
| Cow position: | chr12:22299292-22299512 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 1-96 |
| Cow position: | chr28:16949172-16949077 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 487-1608 |
| Cow position: | chr28:8524064-8525185 (view UCSC Genome Browser custom track) |
| Alignm length: | 1122 |
| Alignm identity: | 871 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 889-1031 |
| Cow position: | chr28:16949233-16949091 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 130 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1415-1550 |
| Cow position: | chr28:16946721-16946586 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1611-1887 |
| Cow position: | chr28:8525128-8525398 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 2370-2606 |
| Cow position: | chr29:43751062-43751294 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 212, 13 |
| Conread position: | 748-1579 |
| Cow position: | chr6:51131098-51131913 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 55 |
| Conread position: | 1-444 |
| Cow position: | chr7:286421-285976 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 304 |
| Conread position: | 454-590 |
| Cow position: | chr7:289833-289697 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 122 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-746 |
| Cow position: | chr7:288423-288258 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 745-904 |
| Cow position: | chr7:288050-287892 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 889-1031 |
| Cow position: | chr7:286482-286340 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1028-1223 |
| Cow position: | chr7:285394-285200 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 1207-1280 |
| Cow position: | chr7:285136-285063 (view UCSC Genome Browser custom track) |
| Alignm length: | 74 |
| Alignm identity: | 71 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1279-1414 |
| Cow position: | chr7:285008-284873 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 135 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1415-1550 |
| Cow position: | chr7:284726-284591 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 134 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1610-1700 |
| Cow position: | chr7:284049-283959 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1610-1700 |
| Cow position: | chr7:284201-284111 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1701-1791 |
| Cow position: | chr7:283289-283199 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1842-2592 |
| Cow position: | chr7:282106-281351 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 718 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 169 |
| Conread position: | 1-82 |
| Cow position: | chrX:17804641-17804560 (view UCSC Genome Browser custom track) |
| Alignm length: | 82 |
| Alignm identity: | 75 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-660 |
| Cow position: | chrX:21974620-21974816 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 154, 23 |
| Conread position: | 491-1977 |
| Cow position: | chrX:17805100-17803619 (view UCSC Genome Browser custom track) |
| Alignm length: | 1488 |
| Alignm identity: | 1272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 1419, 1358 |
| Conread position: | 664-1020 |
| Cow position: | chrX:21974875-21975227 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1009-1597 |
| Cow position: | chrX:21980467-21981052 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 0 |
| Conread position: | 1611-1887 |
| Cow position: | chrX:21981006-21981279 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 1993-2599 |
| Cow position: | chrX:17803510-17802876 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 2082-2476 |
| Cow position: | chrX:21981320-21981688 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 52 |