Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rpigcf0_021389.5
        

               Conread position:
               1-210
               

               Cow position:
               chr1:28722640-28722431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               161, 112
               

               Conread position:
               1-210
               

               Cow position:
               chr1:38414655-38414451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               156, 48
               

               Conread position:
               1-217
               

               Cow position:
               chr1:40953558-40953344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               86, 44
               

               Conread position:
               1-217
               

               Cow position:
               chr1:42290241-42290037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               28, 130
               

               Conread position:
               1-217
               

               Cow position:
               chr1:72656830-72656616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               162, 89
               

               Conread position:
               1-217
               

               Cow position:
               chr1:89809772-89809993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               86, 119
               

               Conread position:
               1-224
               

               Cow position:
               chr1:18406342-18406572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               82, 132
               

               Conread position:
               1-305
               

               Cow position:
               chr1:30027693-30027985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               162, 94
               

               Conread position:
               1-345
               

               Cow position:
               chr1:102555934-102555605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               163, 32
               

               Conread position:
               1-367
               

               Cow position:
               chr1:67902570-67902944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               161, 94
               

               Conread position:
               1-385
               

               Cow position:
               chr1:98661443-98661814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               43, 94
               

               Conread position:
               1-423
               

               Cow position:
               chr1:1461479-1461885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 129
               

               Conread position:
               1-423
               

               Cow position:
               chr1:13645579-13645181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               189, 85
               

               Conread position:
               1-442
               

               Cow position:
               chr1:89899854-89900263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 54
               

               Conread position:
               1-443
               

               Cow position:
               chr1:72120000-72119578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 109
               

               Conread position:
               1-453
               

               Cow position:
               chr1:97123680-97123262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 54
               

               Conread position:
               1-454
               

               Cow position:
               chr1:42176548-42176960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               306
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               178, 74
               

               Conread position:
               1-461
               

               Cow position:
               chr1:5318608-5318176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               308
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               162, 55
               

               Conread position:
               1-461
               

               Cow position:
               chr1:57567798-57567343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 128
               

               Conread position:
               1-468
               

               Cow position:
               chr1:82918810-82919247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 81
               

               Conread position:
               1-468
               

               Cow position:
               chr1:88635223-88634792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 85
               

               Conread position:
               1-474
               

               Cow position:
               chr1:55323674-55324137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 58
               

               Conread position:
               1-477
               

               Cow position:
               chr1:58201756-58202224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               162, 12
               

               Conread position:
               1-481
               

               Cow position:
               chr1:79637087-79637564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 31
               

               Conread position:
               1-487
               

               Cow position:
               chr1:31396265-31395772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 109
               

               Conread position:
               1-488
               

               Cow position:
               chr1:33711909-33711440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 29
               

               Conread position:
               1-489
               

               Cow position:
               chr1:6708242-6708751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 126
               

               Conread position:
               1-489
               

               Cow position:
               chr1:11292256-11292765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 122
               

               Conread position:
               1-489
               

               Cow position:
               chr1:28801578-28802031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 126
               

               Conread position:
               1-489
               

               Cow position:
               chr1:71562726-71563228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 110
               

               Conread position:
               1-489
               

               Cow position:
               chr1:80359317-80359826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 125
               

               Conread position:
               1-489
               

               Cow position:
               chr1:86548282-86548782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               514
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               1-492
               

               Cow position:
               chr1:18244540-18245015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 130
               

               Conread position:
               1-492
               

               Cow position:
               chr1:21087265-21086745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               336
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               12, 49
               

               Conread position:
               1-492
               

               Cow position:
               chr1:56163178-56162669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               330
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               15, 86
               

               Conread position:
               1-492
               

               Cow position:
               chr1:82652485-82651983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 108
               

               Conread position:
               2-210
               

               Cow position:
               chr1:62853981-62854188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               160
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               161, 10
               

               Conread position:
               2-216
               

               Cow position:
               chr1:45097555-45097359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               2-454
               

               Cow position:
               chr1:8824908-8824474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-454
               

               Cow position:
               chr1:76545694-76546131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-454
               

               Cow position:
               chr1:76623099-76623537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-454
               

               Cow position:
               chr1:86699372-86699813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 10
               

               Conread position:
               2-468
               

               Cow position:
               chr1:101858135-101858566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 44
               

               Conread position:
               2-474
               

               Cow position:
               chr1:63501308-63500846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               314
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               27, 89
               

               Conread position:
               2-483
               

               Cow position:
               chr1:13253589-13254050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 10
               

               Conread position:
               2-486
               

               Cow position:
               chr1:72187024-72187501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 17
               

               Conread position:
               2-486
               

               Cow position:
               chr1:88130607-88130133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 129
               

               Conread position:
               2-487
               

               Cow position:
               chr1:79335956-79336425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 128
               

               Conread position:
               2-487
               

               Cow position:
               chr1:89740396-89740864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               357, 104
               

               Conread position:
               3-473
               

               Cow position:
               chr1:58179920-58180361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               314
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               112, 20
               

               Conread position:
               4-425
               

               Cow position:
               chr1:101149689-101149289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 127
               

               Conread position:
               6-486
               

               Cow position:
               chr1:93854362-93853892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 10
               

               Conread position:
               6-489
               

               Cow position:
               chr1:8027299-8027803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 10
               

               Conread position:
               7-473
               

               Cow position:
               chr1:72981109-72980671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 98
               

               Conread position:
               7-486
               

               Cow position:
               chr1:17941969-17942453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 123
               

               Conread position:
               7-486
               

               Cow position:
               chr1:33550765-33550294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 122
               

               Conread position:
               7-486
               

               Cow position:
               chr1:100597540-100598011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 122
               

               Conread position:
               8-190
               

               Cow position:
               chr1:33895520-33895337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               98, 123
               

               Conread position:
               8-202
               

               Cow position:
               chr1:87207570-87207776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               8-217
               

               Cow position:
               chr1:69536751-69536536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               51, 206
               

               Conread position:
               8-225
               

               Cow position:
               chr1:69766305-69766097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               157, 39
               

               Conread position:
               8-242
               

               Cow position:
               chr1:89770841-89771070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               79, 22
               

               Conread position:
               8-260
               

               Cow position:
               chr1:68607707-68607960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-317
               

               Cow position:
               chr1:17036717-17037020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               218
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               157, 108
               

               Conread position:
               8-317
               

               Cow position:
               chr1:55276645-55276948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 101
               

               Conread position:
               8-317
               

               Cow position:
               chr1:56489680-56489378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               218
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               157, 108
               

               Conread position:
               8-373
               

               Cow position:
               chr1:97226859-97227221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 106
               

               Conread position:
               8-379
               

               Cow position:
               chr1:28872918-28872557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-424
               

               Cow position:
               chr1:99995252-99995689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               299
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-454
               

               Cow position:
               chr1:25180190-25180624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 87
               

               Conread position:
               8-456
               

               Cow position:
               chr1:102435186-102435621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 122
               

               Conread position:
               8-457
               

               Cow position:
               chr1:86609042-86608608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               296
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               155, 78
               

               Conread position:
               8-461
               

               Cow position:
               chr1:34689183-34688758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 33
               

               Conread position:
               8-464
               

               Cow position:
               chr1:25549904-25549461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-465
               

               Cow position:
               chr1:69402833-69402389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 119
               

               Conread position:
               8-466
               

               Cow position:
               chr1:49974350-49974792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 88
               

               Conread position:
               8-466
               

               Cow position:
               chr1:85881583-85881147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 55
               

               Conread position:
               8-468
               

               Cow position:
               chr1:55775995-55775552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 121
               

               Conread position:
               8-470
               

               Cow position:
               chr1:69922622-69923072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-473
               

               Cow position:
               chr1:25887304-25887739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 50
               

               Conread position:
               8-473
               

               Cow position:
               chr1:62244807-62245262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 55
               

               Conread position:
               8-477
               

               Cow position:
               chr1:85780937-85781389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 123
               

               Conread position:
               8-486
               

               Cow position:
               chr1:3386166-3386626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 11
               

               Conread position:
               8-486
               

               Cow position:
               chr1:5501816-5501348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr1:22000115-22000578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 122
               

               Conread position:
               8-486
               

               Cow position:
               chr1:63605942-63606413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr1:79457126-79457597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-487
               

               Cow position:
               chr1:20828730-20828255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               317
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               176, 101
               

               Conread position:
               8-487
               

               Cow position:
               chr1:40053196-40052701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               332
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               157, 86
               

               Conread position:
               8-487
               

               Cow position:
               chr1:89425431-89424932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr1:8554169-8553666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr1:18880544-18881044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-489
               

               Cow position:
               chr1:33851120-33850599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               337
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               160, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr1:39543612-39543115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr1:43019966-43019468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 106
               

               Conread position:
               8-489
               

               Cow position:
               chr1:53198634-53198132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 102
               

               Conread position:
               8-489
               

               Cow position:
               chr1:59210293-59210795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr1:61308843-61308355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               325
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               157, 107
               

               Conread position:
               8-489
               

               Cow position:
               chr1:62925454-62924971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 118
               

               Conread position:
               8-489
               

               Cow position:
               chr1:79920886-79921385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-489
               

               Cow position:
               chr1:82564345-82563854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 82
               

               Conread position:
               8-489
               

               Cow position:
               chr1:85791532-85791039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 45
               

               Conread position:
               8-489
               

               Cow position:
               chr1:88759408-88758905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr1:91718793-91719299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               333
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               117, 201
               

               Conread position:
               8-489
               

               Cow position:
               chr1:91898842-91898351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 103
               

               Conread position:
               8-492
               

               Cow position:
               chr1:17012895-17013392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-492
               

               Cow position:
               chr1:40513656-40514121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 72
               

               Conread position:
               8-492
               

               Cow position:
               chr1:40684849-40685351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 86
               

               Conread position:
               8-492
               

               Cow position:
               chr1:57367291-57367768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-492
               

               Cow position:
               chr1:67286331-67285875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               9-317
               

               Cow position:
               chr1:67835298-67835593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               156, 98
               

               Conread position:
               9-486
               

               Cow position:
               chr1:73071178-73071653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 82
               

               Conread position:
               12-212
               

               Cow position:
               chr1:59674326-59674126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               150, 117
               

               Conread position:
               12-453
               

               Cow position:
               chr1:87244636-87244217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 115
               

               Conread position:
               12-466
               

               Cow position:
               chr1:56194094-56194536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 117
               

               Conread position:
               12-473
               

               Cow position:
               chr1:42736294-42735847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-476
               

               Cow position:
               chr1:69287721-69288159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               151, 40
               

               Conread position:
               12-478
               

               Cow position:
               chr1:29904228-29904681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               302
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               103, 69
               

               Conread position:
               12-486
               

               Cow position:
               chr1:58335673-58335209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 88
               

               Conread position:
               12-489
               

               Cow position:
               chr1:30023354-30023851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 114
               

               Conread position:
               12-489
               

               Cow position:
               chr1:87449790-87449293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 111
               

               Conread position:
               12-492
               

               Cow position:
               chr1:52172634-52173142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 117
               

               Conread position:
               12-492
               

               Cow position:
               chr1:57656395-57655895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 77
               

               Conread position:
               12-492
               

               Cow position:
               chr1:58224132-58223645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 97
               

               Conread position:
               13-425
               

               Cow position:
               chr1:37420138-37420542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 45
               

               Conread position:
               15-171
               

               Cow position:
               chr1:56144496-56144652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               144, 114
               

               Conread position:
               15-477
               

               Cow position:
               chr1:76752816-76753265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 99
               

               Conread position:
               16-486
               

               Cow position:
               chr1:62805973-62806432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 100
               

               Conread position:
               16-489
               

               Cow position:
               chr1:13450024-13449531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 107
               

               Conread position:
               17-361
               

               Cow position:
               chr1:31366245-31366595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               54, 114
               

               Conread position:
               19-457
               

               Cow position:
               chr1:23050477-23050048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               301
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               80, 106
               

               Conread position:
               26-492
               

               Cow position:
               chr1:11863439-11863909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 108
               

               Conread position:
               30-487
               

               Cow position:
               chr1:97560536-97560060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               320
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               87, 96
               

               Conread position:
               32-486
               

               Cow position:
               chr1:3934348-3934771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               314
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               130, 48
               

               Conread position:
               37-317
               

               Cow position:
               chr1:30283791-30284061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               128, 70
               

               Conread position:
               39-488
               

               Cow position:
               chr1:52233290-52233702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               301
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               47-476
               

               Cow position:
               chr1:61732854-61732449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               300
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               116, 8
               

               Conread position:
               64-472
               

               Cow position:
               chr1:72135222-72134825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 42
               

               Conread position:
               64-486
               

               Cow position:
               chr1:72080263-72079852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 66
               

               Conread position:
               70-465
               

               Cow position:
               chr1:94659656-94659273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 60
               

               Conread position:
               77-317
               

               Cow position:
               chr1:56722904-56722663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               88, 53
               

               Conread position:
               79-477
               

               Cow position:
               chr1:101760947-101760560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               263
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               84, 11
               

               Conread position:
               97-492
               

               Cow position:
               chr1:37455465-37455084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 33
               

               Conread position:
               126-492
               

               Cow position:
               chr1:9382520-9382908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               39, 310
               

               Conread position:
               129-477
               

               Cow position:
               chr1:53046220-53046557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               33, 79
               

               Conread position:
               133-468
               

               Cow position:
               chr1:40907845-40907516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               30, 80
               

               Conread position:
               163-486
               

               Cow position:
               chr1:91893316-91893625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               293, 44
               

               Conread position:
               172-423
               

               Cow position:
               chr1:102548842-102548603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               207-486
               

               Cow position:
               chr1:99910200-99909932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 83
               

               Conread position:
               215-487
               

               Cow position:
               chr1:78289697-78289424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               251, 18
               

               Conread position:
               228-489
               

               Cow position:
               chr1:69764633-69764371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 71
               

               Conread position:
               232-453
               

               Cow position:
               chr1:42290045-42289837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               232-468
               

               Cow position:
               chr1:62854183-62854417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               235-424
               

               Cow position:
               chr1:87208007-87208191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               241-492
               

               Cow position:
               chr1:53364318-53364073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               26, 81
               

               Conread position:
               258-488
               

               Cow position:
               chr1:45097207-45096979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               265-476
               

               Cow position:
               chr1:52323494-52323286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               280-473
               

               Cow position:
               chr1:76703767-76703959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               295-487
               

               Cow position:
               chr1:68501556-68501365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               304-486
               

               Cow position:
               chr1:38414396-38414214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               168, 108
               

               Conread position:
               304-486
               

               Cow position:
               chr1:89361519-89361338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               304-489
               

               Cow position:
               chr1:28722378-28722195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               304-492
               

               Cow position:
               chr1:33895035-33894849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1-274
               

               Cow position:
               chr10:38847245-38846978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               162, 89
               

               Conread position:
               1-423
               

               Cow position:
               chr10:276465-276077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 89
               

               Conread position:
               1-424
               

               Cow position:
               chr10:62216478-62216077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 99
               

               Conread position:
               1-429
               

               Cow position:
               chr10:21076236-21075831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 125
               

               Conread position:
               1-444
               

               Cow position:
               chr10:62778215-62777797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 127
               

               Conread position:
               1-456
               

               Cow position:
               chr10:24298980-24299421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 94
               

               Conread position:
               1-457
               

               Cow position:
               chr10:47906653-47906177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 123
               

               Conread position:
               1-466
               

               Cow position:
               chr10:38538622-38539071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 77
               

               Conread position:
               1-468
               

               Cow position:
               chr10:25498227-25497781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 89
               

               Conread position:
               1-468
               

               Cow position:
               chr10:29696113-29695664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 90
               

               Conread position:
               1-468
               

               Cow position:
               chr10:60489538-60489076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 96
               

               Conread position:
               1-474
               

               Cow position:
               chr10:49310406-49309958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 94
               

               Conread position:
               1-487
               

               Cow position:
               chr10:21740876-21741384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               333
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               12, 123
               

               Conread position:
               1-492
               

               Cow position:
               chr10:280748-281259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 122
               

               Conread position:
               1-492
               

               Cow position:
               chr10:41566983-41566470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 132
               

               Conread position:
               1-492
               

               Cow position:
               chr10:61297202-61296690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 129
               

               Conread position:
               2-133
               

               Cow position:
               chr10:50018187-50018318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               100
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               98, 10
               

               Conread position:
               2-256
               

               Cow position:
               chr10:15862428-15862674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               160, 10
               

               Conread position:
               2-273
               

               Cow position:
               chr10:24978260-24978535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               110, 21
               

               Conread position:
               2-464
               

               Cow position:
               chr10:41351882-41352335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               11, 138
               

               Conread position:
               2-468
               

               Cow position:
               chr10:34685766-34685326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 93
               

               Conread position:
               2-474
               

               Cow position:
               chr10:14885981-14886426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               317
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               2-477
               

               Cow position:
               chr10:37060802-37060337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 113
               

               Conread position:
               3-481
               

               Cow position:
               chr10:46191244-46190789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 69
               

               Conread position:
               4-217
               

               Cow position:
               chr10:29632988-29633190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               9, 122
               

               Conread position:
               5-427
               

               Cow position:
               chr10:32064019-32063613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               285
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               87, 7
               

               Conread position:
               7-201
               

               Cow position:
               chr10:42628532-42628347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               155, 24
               

               Conread position:
               7-486
               

               Cow position:
               chr10:37769688-37769222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 122
               

               Conread position:
               7-491
               

               Cow position:
               chr10:31523705-31523258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               421, 87
               

               Conread position:
               8-237
               

               Cow position:
               chr10:25359264-25359039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               220, 121
               

               Conread position:
               8-429
               

               Cow position:
               chr10:8289848-8289425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 135
               

               Conread position:
               8-465
               

               Cow position:
               chr10:19511470-19511032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 48
               

               Conread position:
               8-466
               

               Cow position:
               chr10:1375401-1374959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-469
               

               Cow position:
               chr10:10581538-10581072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 121
               

               Conread position:
               8-469
               

               Cow position:
               chr10:22101106-22100659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-474
               

               Cow position:
               chr10:4499573-4499120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 82
               

               Conread position:
               8-486
               

               Cow position:
               chr10:124174-123714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 69
               

               Conread position:
               8-486
               

               Cow position:
               chr10:7282818-7283281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr10:19143474-19143944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 87
               

               Conread position:
               8-486
               

               Cow position:
               chr10:21486781-21486314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr10:29846745-29847222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr10:32650597-32650137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 87
               

               Conread position:
               8-486
               

               Cow position:
               chr10:57990099-57990557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-487
               

               Cow position:
               chr10:51952737-51953237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-487
               

               Cow position:
               chr10:57559687-57560182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               326
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               157, 31
               

               Conread position:
               8-489
               

               Cow position:
               chr10:19840017-19839538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               321
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               157, 66
               

               Conread position:
               8-489
               

               Cow position:
               chr10:21400807-21401302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 86
               

               Conread position:
               8-489
               

               Cow position:
               chr10:32578168-32577664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr10:39179648-39179156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 87
               

               Conread position:
               8-489
               

               Cow position:
               chr10:39817485-39817979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               8-492
               

               Cow position:
               chr10:25565381-25565898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               338
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               101, 218
               

               Conread position:
               8-492
               

               Cow position:
               chr10:41157315-41156816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 57
               

               Conread position:
               9-254
               

               Cow position:
               chr10:58596368-58596130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               103, 118
               

               Conread position:
               9-429
               

               Cow position:
               chr10:62408988-62409395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 105
               

               Conread position:
               12-273
               

               Cow position:
               chr10:39881409-39881673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               79, 117
               

               Conread position:
               12-457
               

               Cow position:
               chr10:34318401-34318822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 77
               

               Conread position:
               12-466
               

               Cow position:
               chr10:39041444-39041887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 113
               

               Conread position:
               12-477
               

               Cow position:
               chr10:38345502-38345964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-489
               

               Cow position:
               chr10:11685803-11686290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 81
               

               Conread position:
               12-492
               

               Cow position:
               chr10:4192351-4192853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 112
               

               Conread position:
               12-492
               

               Cow position:
               chr10:14803695-14803204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 94
               

               Conread position:
               12-492
               

               Cow position:
               chr10:55092971-55092475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 112
               

               Conread position:
               15-284
               

               Cow position:
               chr10:19715188-19715456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 114
               

               Conread position:
               15-488
               

               Cow position:
               chr10:41876776-41876287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 109
               

               Conread position:
               16-489
               

               Cow position:
               chr10:21467112-21466618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 110
               

               Conread position:
               25-482
               

               Cow position:
               chr10:42747949-42747511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               139, 95
               

               Conread position:
               33-390
               

               Cow position:
               chr10:28116601-28116943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               82, 20
               

               Conread position:
               33-488
               

               Cow position:
               chr10:38546383-38546832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 94
               

               Conread position:
               59-480
               

               Cow position:
               chr10:54127273-54126868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               60-460
               

               Cow position:
               chr10:14951526-14951153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 35
               

               Conread position:
               68-487
               

               Cow position:
               chr10:28641275-28640854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               69-260
               

               Cow position:
               chr10:2123307-2123499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               95, 61
               

               Conread position:
               100-489
               

               Cow position:
               chr10:19497140-19497550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               272
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               65, 25
               

               Conread position:
               118-477
               

               Cow position:
               chr10:37040842-37040499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               46, 12
               

               Conread position:
               130-322
               

               Cow position:
               chr10:42736251-42736065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               28, 99
               

               Conread position:
               221-475
               

               Cow position:
               chr10:41144663-41144903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               163, 9
               

               Conread position:
               233-492
               

               Cow position:
               chr10:42628120-42627856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               125, 17
               

               Conread position:
               240-466
               

               Cow position:
               chr10:2123765-2123977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               251-492
               

               Cow position:
               chr10:29633197-29633434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               54, 60
               

               Conread position:
               300-487
               

               Cow position:
               chr10:39780265-39780453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               31, 114
               

               Conread position:
               304-486
               

               Cow position:
               chr10:25358936-25358749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               152, 111
               

               Conread position:
               312-466
               

               Cow position:
               chr10:23458433-23458586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               1-210
               

               Cow position:
               chr11:21466586-21466384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               162, 106
               

               Conread position:
               1-213
               

               Cow position:
               chr11:44861015-44861229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               166
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               1-224
               

               Cow position:
               chr11:31414727-31414947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               64, 48
               

               Conread position:
               1-290
               

               Cow position:
               chr11:30125737-30126008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               161, 34
               

               Conread position:
               1-423
               

               Cow position:
               chr11:9659885-9660273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 11
               

               Conread position:
               1-468
               

               Cow position:
               chr11:8887640-8888086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 129
               

               Conread position:
               1-472
               

               Cow position:
               chr11:17925058-17925506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               302
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               114, 81
               

               Conread position:
               1-477
               

               Cow position:
               chr11:42428849-42428388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 102
               

               Conread position:
               1-487
               

               Cow position:
               chr11:28063200-28062707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 126
               

               Conread position:
               1-487
               

               Cow position:
               chr11:52462606-52462106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 129
               

               Conread position:
               1-489
               

               Cow position:
               chr11:36744667-36745176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 100
               

               Conread position:
               1-489
               

               Cow position:
               chr11:37477605-37478114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 124
               

               Conread position:
               1-489
               

               Cow position:
               chr11:52418902-52418399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 100
               

               Conread position:
               1-491
               

               Cow position:
               chr11:4041550-4042064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 110
               

               Conread position:
               2-242
               

               Cow position:
               chr11:66726008-66725779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               160, 10
               

               Conread position:
               2-259
               

               Cow position:
               chr11:44157725-44157981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-444
               

               Cow position:
               chr11:37492140-37492545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 18
               

               Conread position:
               2-486
               

               Cow position:
               chr11:26125420-26125897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-486
               

               Cow position:
               chr11:58133880-58133390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 10
               

               Conread position:
               3-201
               

               Cow position:
               chr11:17220705-17220895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               159, 6
               

               Conread position:
               4-489
               

               Cow position:
               chr11:25527088-25526636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               333
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               5, 9
               

               Conread position:
               6-485
               

               Cow position:
               chr11:54209132-54208659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 123
               

               Conread position:
               7-456
               

               Cow position:
               chr11:9157918-9158346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 5
               

               Conread position:
               7-465
               

               Cow position:
               chr11:44507672-44507238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               306
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               152, 5
               

               Conread position:
               7-486
               

               Cow position:
               chr11:41171189-41171640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 122
               

               Conread position:
               7-489
               

               Cow position:
               chr11:76374966-76375433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 5
               

               Conread position:
               8-150
               

               Cow position:
               chr11:12351560-12351701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               8-220
               

               Cow position:
               chr11:7072970-7073172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               8-266
               

               Cow position:
               chr11:63660079-63660341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               116, 105
               

               Conread position:
               8-301
               

               Cow position:
               chr11:1496566-1496851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               154, 59
               

               Conread position:
               8-317
               

               Cow position:
               chr11:31925703-31925403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 112
               

               Conread position:
               8-317
               

               Cow position:
               chr11:32450370-32450062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-429
               

               Cow position:
               chr11:11987623-11987213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 122
               

               Conread position:
               8-455
               

               Cow position:
               chr11:15998401-15997976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               302
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               182, 87
               

               Conread position:
               8-456
               

               Cow position:
               chr11:7687424-7686964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               311
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               84, 211
               

               Conread position:
               8-457
               

               Cow position:
               chr11:12093264-12092822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 122
               

               Conread position:
               8-463
               

               Cow position:
               chr11:38835914-38836357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-466
               

               Cow position:
               chr11:10846947-10846510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 83
               

               Conread position:
               8-466
               

               Cow position:
               chr11:19102983-19103429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-466
               

               Cow position:
               chr11:43515128-43515597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 88
               

               Conread position:
               8-466
               

               Cow position:
               chr11:71329147-71328703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 123
               

               Conread position:
               8-473
               

               Cow position:
               chr11:9220508-9220967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 27
               

               Conread position:
               8-477
               

               Cow position:
               chr11:28055091-28055537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-477
               

               Cow position:
               chr11:72110458-72110913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 85
               

               Conread position:
               8-486
               

               Cow position:
               chr11:12358919-12359384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr11:23876807-23876335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr11:24392828-24392362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 17
               

               Conread position:
               8-486
               

               Cow position:
               chr11:29669126-29669594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr11:37093559-37094025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr11:85394306-85394774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 121
               

               Conread position:
               8-487
               

               Cow position:
               chr11:77729023-77729489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 122
               

               Conread position:
               8-489
               

               Cow position:
               chr11:9736449-9736944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               333
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               157, 102
               

               Conread position:
               8-489
               

               Cow position:
               chr11:19064747-19065254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               chr11:20921243-20921744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-489
               

               Cow position:
               chr11:57628544-57629038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-492
               

               Cow position:
               chr11:8262193-8262668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 87
               

               Conread position:
               8-492
               

               Cow position:
               chr11:28230246-28230744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               8-492
               

               Cow position:
               chr11:67450000-67449491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 105
               

               Conread position:
               8-492
               

               Cow position:
               chr11:67847065-67847567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 41
               

               Conread position:
               9-468
               

               Cow position:
               chr11:10210461-10210909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 94
               

               Conread position:
               9-492
               

               Cow position:
               chr11:45110635-45110137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 75
               

               Conread position:
               10-492
               

               Cow position:
               chr11:24677558-24677097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 13
               

               Conread position:
               12-252
               

               Cow position:
               chr11:40777232-40777474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 118
               

               Conread position:
               12-468
               

               Cow position:
               chr11:24242944-24242508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               306
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               216, 13
               

               Conread position:
               12-468
               

               Cow position:
               chr11:34020407-34019974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               12-474
               

               Cow position:
               chr11:4028051-4028498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 117
               

               Conread position:
               12-476
               

               Cow position:
               chr11:32683185-32682722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               301
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               150, 75
               

               Conread position:
               12-488
               

               Cow position:
               chr11:17108187-17108663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 118
               

               Conread position:
               12-489
               

               Cow position:
               chr11:3492511-3492016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 81
               

               Conread position:
               13-225
               

               Cow position:
               chr11:29234147-29234354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               150, 77
               

               Conread position:
               13-474
               

               Cow position:
               chr11:65162038-65162479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 15
               

               Conread position:
               15-492
               

               Cow position:
               chr11:53287959-53288438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 101
               

               Conread position:
               17-225
               

               Cow position:
               chr11:33195118-33195325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               148, 106
               

               Conread position:
               23-486
               

               Cow position:
               chr11:53432281-53432731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 106
               

               Conread position:
               24-474
               

               Cow position:
               chr11:81853104-81853541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 35
               

               Conread position:
               26-418
               

               Cow position:
               chr11:7394600-7394221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 80
               

               Conread position:
               26-489
               

               Cow position:
               chr11:44496101-44496550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 98
               

               Conread position:
               36-486
               

               Cow position:
               chr11:8244197-8243737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               324
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               98, 189
               

               Conread position:
               36-491
               

               Cow position:
               chr11:15983105-15982645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               318
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               129, 59
               

               Conread position:
               58-484
               

               Cow position:
               chr11:27283440-27283014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               99, 66
               

               Conread position:
               59-489
               

               Cow position:
               chr11:52530481-52530039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               67-485
               

               Cow position:
               chr11:7112895-7112489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 19
               

               Conread position:
               71-489
               

               Cow position:
               chr11:39798833-39799272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               296
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               36, 55
               

               Conread position:
               77-317
               

               Cow position:
               chr11:9607236-9607468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               106-486
               

               Cow position:
               chr11:4271423-4271801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               271
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               56, 24
               

               Conread position:
               151-456
               

               Cow position:
               chr11:75919928-75919624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 0
               

               Conread position:
               188-460
               

               Cow position:
               chr11:56179241-56178984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 40
               

               Conread position:
               200-489
               

               Cow position:
               chr11:7073300-7073568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               204-464
               

               Cow position:
               chr11:12351969-12352229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               13, 25
               

               Conread position:
               224-468
               

               Cow position:
               chr11:75132827-75132584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               241-423
               

               Cow position:
               chr11:30304563-30304381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               61, 172
               

               Conread position:
               256-492
               

               Cow position:
               chr11:30126025-30126260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               118, 159
               

               Conread position:
               262-470
               

               Cow position:
               chr11:21466367-21466161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               268-470
               

               Cow position:
               chr11:7306275-7306483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               54, 9
               

               Conread position:
               276-492
               

               Cow position:
               chr11:63661331-63661541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               295-488
               

               Cow position:
               chr11:40779420-40779611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               89, 29
               

               Conread position:
               295-492
               

               Cow position:
               chr11:31925375-31925181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 49
               

               Conread position:
               304-477
               

               Cow position:
               chr11:44158241-44158414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               152, 111
               

               Conread position:
               304-489
               

               Cow position:
               chr11:33195705-33195886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               304-492
               

               Cow position:
               chr11:7122119-7122306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1-210
               

               Cow position:
               chr12:48404846-48404638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               111, 121
               

               Conread position:
               1-217
               

               Cow position:
               chr12:8310982-8310766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               86, 127
               

               Conread position:
               1-217
               

               Cow position:
               chr12:21901743-21901535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               162, 88
               

               Conread position:
               1-224
               

               Cow position:
               chr12:2595-2373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               162, 126
               

               Conread position:
               1-453
               

               Cow position:
               chr12:22026554-22026134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               158, 110
               

               Conread position:
               1-473
               

               Cow position:
               chr12:1868266-1867808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               314
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               93, 72
               

               Conread position:
               1-487
               

               Cow position:
               chr12:21426494-21425995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               336
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               12, 120
               

               Conread position:
               1-492
               

               Cow position:
               chr12:2282343-2281856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 85
               

               Conread position:
               1-492
               

               Cow position:
               chr12:32653345-32652825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 110
               

               Conread position:
               2-172
               

               Cow position:
               chr12:42420616-42420784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               161, 8
               

               Conread position:
               2-423
               

               Cow position:
               chr12:26947460-26947858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               305
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               105, 8
               

               Conread position:
               2-455
               

               Cow position:
               chr12:8678324-8678762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-474
               

               Cow position:
               chr12:2839796-2840249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 14
               

               Conread position:
               2-474
               

               Cow position:
               chr12:21499915-21499457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               312
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               7, 89
               

               Conread position:
               2-492
               

               Cow position:
               chr12:25101264-25101758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 10
               

               Conread position:
               7-210
               

               Cow position:
               chr12:14662820-14663022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               155, 93
               

               Conread position:
               7-489
               

               Cow position:
               chr12:37558350-37557850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 116
               

               Conread position:
               8-317
               

               Cow position:
               chr12:21254866-21255169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               179, 117
               

               Conread position:
               8-423
               

               Cow position:
               chr12:22332411-22332011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               285
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               166, 17
               

               Conread position:
               8-459
               

               Cow position:
               chr12:10483835-10483382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               287
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               65, 79
               

               Conread position:
               8-466
               

               Cow position:
               chr12:252267-252713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 123
               

               Conread position:
               8-479
               

               Cow position:
               chr12:11098031-11097572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr12:6406857-6407321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 111
               

               Conread position:
               8-486
               

               Cow position:
               chr12:20998330-20998803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 123
               

               Conread position:
               8-486
               

               Cow position:
               chr12:22205955-22206413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr12:42860025-42860490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-489
               

               Cow position:
               chr12:26141603-26141101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               507
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 118
               

               Conread position:
               8-489
               

               Cow position:
               chr12:43031593-43032083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 101
               

               Conread position:
               12-487
               

               Cow position:
               chr12:21197617-21197149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 6
               

               Conread position:
               12-492
               

               Cow position:
               chr12:21207483-21206986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 111
               

               Conread position:
               13-329
               

               Cow position:
               chr12:15951471-15951777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 90
               

               Conread position:
               15-477
               

               Cow position:
               chr12:1402276-1401827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 114
               

               Conread position:
               15-486
               

               Cow position:
               chr12:27933163-27933623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 114
               

               Conread position:
               18-226
               

               Cow position:
               chr12:21941559-21941352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               140, 109
               

               Conread position:
               38-478
               

               Cow position:
               chr12:3360673-3360211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               307
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               127, 87
               

               Conread position:
               47-489
               

               Cow position:
               chr12:21883777-21883311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               73, 50
               

               Conread position:
               160-394
               

               Cow position:
               chr12:9708821-9709060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               47, 102
               

               Conread position:
               170-486
               

               Cow position:
               chr12:28766469-28766776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               14, 46
               

               Conread position:
               177-492
               

               Cow position:
               chr12:22121347-22121041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               183-489
               

               Cow position:
               chr12:7425245-7424939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               68, 29
               

               Conread position:
               196-466
               

               Cow position:
               chr12:14663119-14663391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               5, 19
               

               Conread position:
               200-475
               

               Cow position:
               chr12:21058370-21058639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               22, 12
               

               Conread position:
               209-489
               

               Cow position:
               chr12:48404363-48404094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               189, 19
               

               Conread position:
               239-473
               

               Cow position:
               chr12:32183108-32182882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               166, 0
               

               Conread position:
               244-468
               

               Cow position:
               chr12:45261217-45260995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               245-423
               

               Cow position:
               chr12:2379-2202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               52, 44
               

               Conread position:
               256-461
               

               Cow position:
               chr12:21941058-21940861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               41, 33
               

               Conread position:
               304-457
               

               Cow position:
               chr12:8310554-8310402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               80, 74
               

               Conread position:
               306-468
               

               Cow position:
               chr12:21901483-21901322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               317-474
               

               Cow position:
               chr12:15954194-15954348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               1-204
               

               Cow position:
               chr13:3058417-3058620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               164, 122
               

               Conread position:
               1-397
               

               Cow position:
               chr13:30140569-30140178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               285, 115
               

               Conread position:
               1-423
               

               Cow position:
               chr13:33825152-33825562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 95
               

               Conread position:
               1-429
               

               Cow position:
               chr13:3654735-3655147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 86
               

               Conread position:
               1-468
               

               Cow position:
               chr13:34692738-34692306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               1-470
               

               Cow position:
               chr13:62328006-62328451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 90
               

               Conread position:
               1-488
               

               Cow position:
               chr13:30657385-30657846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 113
               

               Conread position:
               1-489
               

               Cow position:
               chr13:4872656-4872145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               517
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 126
               

               Conread position:
               1-489
               

               Cow position:
               chr13:50109043-50108558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 126
               

               Conread position:
               1-492
               

               Cow position:
               chr13:32986470-32986985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               524
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               1-492
               

               Cow position:
               chr13:34187112-34187586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 134
               

               Conread position:
               2-217
               

               Cow position:
               chr13:33927984-33928185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               160, 88
               

               Conread position:
               2-250
               

               Cow position:
               chr13:34936713-34936463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               195
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               74, 95
               

               Conread position:
               2-466
               

               Cow position:
               chr13:32738244-32738684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 14
               

               Conread position:
               2-468
               

               Cow position:
               chr13:3276732-3276287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 87
               

               Conread position:
               2-470
               

               Cow position:
               chr13:48356901-48356449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 108
               

               Conread position:
               2-471
               

               Cow position:
               chr13:34143082-34143516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 130
               

               Conread position:
               2-492
               

               Cow position:
               chr13:34326100-34326594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 125
               

               Conread position:
               4-486
               

               Cow position:
               chr13:32544521-32544055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 88
               

               Conread position:
               7-317
               

               Cow position:
               chr13:34868339-34868030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 88
               

               Conread position:
               8-367
               

               Cow position:
               chr13:4482045-4481704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-405
               

               Cow position:
               chr13:54284157-54283774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 11
               

               Conread position:
               8-456
               

               Cow position:
               chr13:46732782-46733194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               155, 99
               

               Conread position:
               8-464
               

               Cow position:
               chr13:4940655-4940211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 121
               

               Conread position:
               8-464
               

               Cow position:
               chr13:35756809-35756361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 130
               

               Conread position:
               8-466
               

               Cow position:
               chr13:9044079-9043655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 114
               

               Conread position:
               8-466
               

               Cow position:
               chr13:31612767-31613212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 99
               

               Conread position:
               8-468
               

               Cow position:
               chr13:2908875-2909310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 105
               

               Conread position:
               8-476
               

               Cow position:
               chr13:13046250-13046684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 120
               

               Conread position:
               8-486
               

               Cow position:
               chr13:1593586-1594057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr13:15520945-15521420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr13:30302637-30302171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 35
               

               Conread position:
               8-486
               

               Cow position:
               chr13:33336754-33337217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr13:34042796-34043263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 121
               

               Conread position:
               8-489
               

               Cow position:
               chr13:30245165-30245659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-492
               

               Cow position:
               chr13:2297230-2297726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 56
               

               Conread position:
               8-492
               

               Cow position:
               chr13:15543034-15542560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-492
               

               Cow position:
               chr13:15924814-15925290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-492
               

               Cow position:
               chr13:20542792-20543256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 67
               

               Conread position:
               8-492
               

               Cow position:
               chr13:31734512-31735007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 98
               

               Conread position:
               12-423
               

               Cow position:
               chr13:31832173-31831786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               12-468
               

               Cow position:
               chr13:6668559-6669020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 117
               

               Conread position:
               12-489
               

               Cow position:
               chr13:2389228-2389729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 197
               

               Conread position:
               12-489
               

               Cow position:
               chr13:21840630-21841129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 112
               

               Conread position:
               15-489
               

               Cow position:
               chr13:17308042-17307557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               325
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               150, 91
               

               Conread position:
               15-489
               

               Cow position:
               chr13:35030077-35029596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 80
               

               Conread position:
               15-489
               

               Cow position:
               chr13:53834334-53833839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 111
               

               Conread position:
               22-226
               

               Cow position:
               chr13:34911811-34912012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               140, 68
               

               Conread position:
               25-253
               

               Cow position:
               chr13:30237722-30237501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               133, 84
               

               Conread position:
               49-492
               

               Cow position:
               chr13:61951719-61951291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               168, 80
               

               Conread position:
               65-489
               

               Cow position:
               chr13:676477-676034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               291
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               100, 65
               

               Conread position:
               78-489
               

               Cow position:
               chr13:49973216-49972782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               281
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               87, 52
               

               Conread position:
               104-457
               

               Cow position:
               chr13:47859797-47859470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               60, 11
               

               Conread position:
               131-489
               

               Cow position:
               chr13:51764075-51763695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               34, 83
               

               Conread position:
               142-476
               

               Cow position:
               chr13:15080733-15081056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               22, 71
               

               Conread position:
               230-468
               

               Cow position:
               chr13:2232040-2231815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               251-487
               

               Cow position:
               chr13:34936195-34935960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               70, 33
               

               Conread position:
               286-461
               

               Cow position:
               chr13:44184747-44184920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               10, 91
               

               Conread position:
               304-487
               

               Cow position:
               chr13:3058984-3059166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1-162
               

               Cow position:
               chr14:44422009-44421850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               6, 12
               

               Conread position:
               1-199
               

               Cow position:
               chr14:7831088-7831280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               1-210
               

               Cow position:
               chr14:44855973-44856182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               156, 126
               

               Conread position:
               1-224
               

               Cow position:
               chr14:34775047-34774832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               161, 89
               

               Conread position:
               1-224
               

               Cow position:
               chr14:47624021-47623801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               1-255
               

               Cow position:
               chr14:43552872-43552621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               6, 12
               

               Conread position:
               1-275
               

               Cow position:
               chr14:14309612-14309880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               114, 126
               

               Conread position:
               1-371
               

               Cow position:
               chr14:22018856-22018478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 11
               

               Conread position:
               1-372
               

               Cow position:
               chr14:36967711-36967363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               99, 127
               

               Conread position:
               1-453
               

               Cow position:
               chr14:23690772-23691205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 128
               

               Conread position:
               1-460
               

               Cow position:
               chr14:35387678-35388128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 137
               

               Conread position:
               1-466
               

               Cow position:
               chr14:45833617-45833162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 136
               

               Conread position:
               1-468
               

               Cow position:
               chr14:41085356-41085783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 40
               

               Conread position:
               1-474
               

               Cow position:
               chr14:44780463-44780921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               6, 70
               

               Conread position:
               1-474
               

               Cow position:
               chr14:44782803-44783261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               313
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               6, 70
               

               Conread position:
               1-475
               

               Cow position:
               chr14:11468051-11467600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 113
               

               Conread position:
               1-477
               

               Cow position:
               chr14:22032230-22032690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 128
               

               Conread position:
               1-489
               

               Cow position:
               chr14:13660535-13660992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               331
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               98, 131
               

               Conread position:
               1-490
               

               Cow position:
               chr14:45916852-45916348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 79
               

               Conread position:
               1-492
               

               Cow position:
               chr14:13272710-13272226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 42
               

               Conread position:
               1-492
               

               Cow position:
               chr14:40339163-40338668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 129
               

               Conread position:
               1-492
               

               Cow position:
               chr14:44376888-44376400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 96
               

               Conread position:
               2-252
               

               Cow position:
               chr14:44261639-44261890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               5, 113
               

               Conread position:
               2-285
               

               Cow position:
               chr14:40170221-40170509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               10, 73
               

               Conread position:
               2-486
               

               Cow position:
               chr14:50110030-50109566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 8
               

               Conread position:
               2-492
               

               Cow position:
               chr14:44225864-44225376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 21
               

               Conread position:
               3-476
               

               Cow position:
               chr14:44580395-44579941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 120
               

               Conread position:
               4-226
               

               Cow position:
               chr14:29048448-29048666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               4-317
               

               Cow position:
               chr14:45205523-45205199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 97
               

               Conread position:
               6-486
               

               Cow position:
               chr14:5528513-5528041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 10
               

               Conread position:
               7-454
               

               Cow position:
               chr14:19328821-19329255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 5
               

               Conread position:
               7-480
               

               Cow position:
               chr14:45160311-45159828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 123
               

               Conread position:
               7-492
               

               Cow position:
               chr14:17684841-17684373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 46
               

               Conread position:
               7-492
               

               Cow position:
               chr14:30596923-30597434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               337
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               157, 23
               

               Conread position:
               8-198
               

               Cow position:
               chr14:13778309-13778119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-198
               

               Cow position:
               chr14:16920237-16920427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-225
               

               Cow position:
               chr14:9045010-9044794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               157, 121
               

               Conread position:
               8-260
               

               Cow position:
               chr14:45079979-45079733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               118, 79
               

               Conread position:
               8-275
               

               Cow position:
               chr14:46669767-46669505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               150, 45
               

               Conread position:
               8-317
               

               Cow position:
               chr14:750014-749712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               8-441
               

               Cow position:
               chr14:14422565-14422978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               85, 23
               

               Conread position:
               8-452
               

               Cow position:
               chr14:37223347-37222915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 121
               

               Conread position:
               8-454
               

               Cow position:
               chr14:20781901-20781470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 88
               

               Conread position:
               8-464
               

               Cow position:
               chr14:7471821-7471377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-479
               

               Cow position:
               chr14:44551500-44551034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 120
               

               Conread position:
               8-485
               

               Cow position:
               chr14:46464236-46463777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 98
               

               Conread position:
               8-486
               

               Cow position:
               chr14:11154708-11155178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr14:13302476-13302005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               chr14:17001610-17002076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               490
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               
8-486UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr14:28994410-28994884 (view  custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               
8-486UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:44685493-44685012 (view  custom track)

               
               
               
Alignm length: 488

               
               
               
Alignm identity: 335

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 155, 122
8-488UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:46084070-46083605 (view  custom track)

               
               
               
Alignm length: 484

               
               
               
Alignm identity: 359

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 107, 68

               
               
               Conread position:8-489
               
               
               Cow position:chr14:17492012-17492508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 96

               
               
               Conread position:8-489
               
               
               Cow position:chr14:30585491-30585993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr14:45672600-45673100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:8-489
               
               
               Cow position:chr14:45712530-45712978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:331
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:8-492
               
               
               Cow position:chr14:45767451-45767004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:323
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:9-376
               
               
               Cow position:chr14:38532854-38533218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:9-460
               
               
               Cow position:chr14:31607474-31607901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):106, 206

               
               
               Conread position:9-484
               
               
               Cow position:chr14:15277407-15277851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):180, 87

               
               
               Conread position:10-413
               
               
               Cow position:chr14:33235445-33235046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):105, 6

               
               
               Conread position:12-217
               
               
               Cow position:chr14:45850669-45850465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):151, 101

               
               
               Conread position:12-463
               
               
               Cow position:chr14:48254871-48255310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:12-486
               
               
               Cow position:chr14:16273855-16274324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 118

               
               
               Conread position:12-489
               
               
               Cow position:chr14:44130368-44129930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:328
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):118, 85

               
               
               Conread position:14-224
               
               
               Cow position:chr14:1500193-1499983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:14-492
               
               
               Cow position:chr14:50134349-50133888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:15-253
               
               
               Cow position:chr14:23256799-23256556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):94, 195

               
               
               Conread position:17-489
               
               
               Cow position:chr14:2283424-2282939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 106

               
               
               Conread position:35-489
               
               
               Cow position:chr14:17241653-17241184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:37-466
               
               
               Cow position:chr14:41755289-41754871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:78-487
               
               
               Cow position:chr14:33394428-33394858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:79-487
               
               
               Cow position:chr14:10562006-10561577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:103-472
               
               
               Cow position:chr14:41407210-41406831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:129-489
               
               
               Cow position:chr14:9044782-9044426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):98, 71

               
               
               Conread position:165-464
               
               
               Cow position:chr14:5511479-5511190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):6, 51

               
               
               Conread position:172-423
               
               
               Cow position:chr14:42404187-42403938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:200-485
               
               
               Cow position:chr14:45304374-45304652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:207-489
               
               
               Cow position:chr14:16418311-16418595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 176

               
               
               Conread position:237-469
               
               
               Cow position:chr14:16920519-16920738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:241-453
               
               
               Cow position:chr14:44856187-44856398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:245-489
               
               
               Cow position:chr14:47623807-47623576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:304-489
               
               
               Cow position:chr14:29049249-29049433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:331-488
               
               
               Cow position:chr14:46434329-46434173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:1-204
               
               
               Cow position:chr15:4670872-4670674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):162, 17

               
               
               Conread position:1-210
               
               
               Cow position:chr15:7894745-7894955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-210
               
               
               Cow position:chr15:41365636-41365426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):162, 113

               
               
               Conread position:1-226
               
               
               Cow position:chr15:3261950-3262174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 129

               
               
               Conread position:1-275
               
               
               Cow position:chr15:2006993-2006720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:1-348
               
               
               Cow position:chr15:49676481-49676152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):226, 92

               
               
               Conread position:1-360
               
               
               Cow position:chr15:1771956-1771595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:1-399
               
               
               Cow position:chr15:35747749-35747379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 120

               
               
               Conread position:1-422
               
               
               Cow position:chr15:6277802-6278198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 96

               
               
               Conread position:1-454
               
               
               Cow position:chr15:6156510-6156949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 79

               
               
               Conread position:1-456
               
               
               Cow position:chr15:324400-323933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):79, 27

               
               
               Conread position:1-459
               
               
               Cow position:chr15:21816294-21816737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 109

               
               
               Conread position:1-460
               
               
               Cow position:chr15:40104924-40104468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):87, 155

               
               
               Conread position:1-468
               
               
               Cow position:chr15:6371386-6371832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 124

               
               
               Conread position:1-470
               
               
               Cow position:chr15:1662836-1662393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):226, 31

               
               
               Conread position:1-472
               
               
               Cow position:chr15:38957568-38958041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):105, 198

               
               
               Conread position:1-475
               
               
               Cow position:chr15:35648761-35649207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 139

               
               
               Conread position:1-480
               
               
               Cow position:chr15:32680094-32680576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 42

               
               
               Conread position:1-486
               
               
               Cow position:chr15:8098941-8098455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:1-487
               
               
               Cow position:chr15:35734914-35734444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 108

               
               
               Conread position:1-488
               
               
               Cow position:chr15:1519689-1520182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:1-488
               
               
               Cow position:chr15:21960966-21960513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 114

               
               
               Conread position:1-489
               
               
               Cow position:chr15:21877900-21878409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:1-490
               
               
               Cow position:chr15:36642084-36641608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:1-491
               
               
               Cow position:chr15:7544333-7543823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 128

               
               
               Conread position:1-492
               
               
               Cow position:chr15:2593352-2593855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:1-492
               
               
               Cow position:chr15:4961107-4960648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 52

               
               
               Conread position:1-492
               
               
               Cow position:chr15:6078185-6077734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):159, 44

               
               
               Conread position:1-492
               
               
               Cow position:chr15:32693014-32692515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 127

               
               
               Conread position:2-199
               
               
               Cow position:chr15:4921598-4921403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-210
               
               
               Cow position:chr15:8000790-8001003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:2-210
               
               
               Cow position:chr15:23157375-23157585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 128

               
               
               Conread position:2-348
               
               
               Cow position:chr15:51800194-51799858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:2-456
               
               
               Cow position:chr15:21448515-21448081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 17

               
               
               Conread position:2-460
               
               
               Cow position:chr15:15347666-15348112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:2-466
               
               
               Cow position:chr15:12421712-12422162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-468
               
               
               Cow position:chr15:10787640-10788081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 17

               
               
               Conread position:2-469
               
               
               Cow position:chr15:1236862-1236424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):290, 11

               
               
               Conread position:2-486
               
               
               Cow position:chr15:35754373-35754834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr15:4677950-4677492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:2-492
               
               
               Cow position:chr15:7933429-7932967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 10

               
               
               Conread position:3-481
               
               
               Cow position:chr15:24793508-24793048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 107

               
               
               Conread position:4-466
               
               
               Cow position:chr15:17039800-17040247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:4-466
               
               
               Cow position:chr15:32494935-32495382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 125

               
               
               Conread position:4-489
               
               
               Cow position:chr15:22920577-22920081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:5-488
               
               
               Cow position:chr15:28490693-28491187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:337
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:6-399
               
               
               Cow position:chr15:45886253-45885879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):157, 6

               
               
               Conread position:6-423
               
               
               Cow position:chr15:4795126-4794737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):157, 19

               
               
               Conread position:6-474
               
               
               Cow position:chr15:7836689-7836237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:7-226
               
               
               Cow position:chr15:16540761-16540548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:7-380
               
               
               Cow position:chr15:4764660-4764300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:7-452
               
               
               Cow position:chr15:32722732-32723164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 5

               
               
               Conread position:7-464
               
               
               Cow position:chr15:2076103-2075662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 28

               
               
               Conread position:7-466
               
               
               Cow position:chr15:38979365-38978903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 122

               
               
               Conread position:7-489
               
               
               Cow position:chr15:6386846-6387324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 115

               
               
               Conread position:8-211
               
               
               Cow position:chr15:36648360-36648157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):154, 103

               
               
               Conread position:8-224
               
               
               Cow position:chr15:3843374-3843588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:8-253
               
               
               Cow position:chr15:36970370-36970126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-258
               
               
               Cow position:chr15:444055-443810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:8-260
               
               
               Cow position:chr15:7233758-7233513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:8-266
               
               
               Cow position:chr15:42320969-42321229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-274
               
               
               Cow position:chr15:19738603-19738868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 123

               
               
               Conread position:8-296
               
               
               Cow position:chr15:17271926-17272220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:8-317
               
               
               Cow position:chr15:6594378-6594686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):155, 121

               
               
               Conread position:8-365
               
               
               Cow position:chr15:2011530-2011185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):154, 41

               
               
               Conread position:8-394
               
               
               Cow position:chr15:24294537-24294173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-423
               
               
               Cow position:chr15:690241-689829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):221, 17

               
               
               Conread position:8-427
               
               
               Cow position:chr15:685612-685200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 120

               
               
               Conread position:8-454
               
               
               Cow position:chr15:18333381-18333815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-458
               
               
               Cow position:chr15:1763538-1763089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 114

               
               
               Conread position:8-460
               
               
               Cow position:chr15:4630462-4630921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:319
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:8-466
               
               
               Cow position:chr15:50124489-50124967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:8-476
               
               
               Cow position:chr15:2923962-2923500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 123

               
               
               Conread position:8-477
               
               
               Cow position:chr15:51216040-51215580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr15:525407-525872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 58

               
               
               Conread position:8-486
               
               
               Cow position:chr15:2902703-2903149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:8-486
               
               
               Cow position:chr15:4384721-4384254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr15:6554406-6554881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 108

               
               
               Conread position:8-486
               
               
               Cow position:chr15:18576170-18575699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 124

               
               
               Conread position:8-486
               
               
               Cow position:chr15:31358349-31357880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 57

               
               
               Conread position:8-486
               
               
               Cow position:chr15:42490651-42490182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 123

               
               
               Conread position:8-489
               
               
               Cow position:chr15:2648210-2648705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-489
               
               
               Cow position:chr15:7186592-7187092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 66

               
               
               Conread position:8-489
               
               
               Cow position:chr15:11598668-11599166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:8-489
               
               
               Cow position:chr15:13428490-13427993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 85

               
               
               Conread position:8-489
               
               
               Cow position:chr15:18268541-18269024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:333
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):219, 101

               
               
               Conread position:8-489
               
               
               Cow position:chr15:20748862-20748357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 201

               
               
               Conread position:8-489
               
               
               Cow position:chr15:22204667-22205169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr15:50144952-50144443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 205

               
               
               Conread position:8-492
               
               
               Cow position:chr15:55647-55151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):219, 100

               
               
               Conread position:8-492
               
               
               Cow position:chr15:370210-370707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:8-492
               
               
               Cow position:chr15:1781700-1781212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 31

               
               
               Conread position:8-492
               
               
               Cow position:chr15:4649283-4648823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 99

               
               
               Conread position:8-492
               
               
               Cow position:chr15:7260074-7259570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 121

               
               
               Conread position:8-492
               
               
               Cow position:chr15:17080742-17081238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:335
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):157, 82

               
               
               Conread position:8-492
               
               
               Cow position:chr15:17291902-17291384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 98

               
               
               Conread position:8-492
               
               
               Cow position:chr15:32709991-32709490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 82

               
               
               Conread position:9-409
               
               
               Cow position:chr15:4681668-4681266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 14

               
               
               Conread position:9-471
               
               
               Cow position:chr15:10479254-10479703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 50

               
               
               Conread position:9-477
               
               
               Cow position:chr15:42936159-42935705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 120

               
               
               Conread position:11-492
               
               
               Cow position:chr15:6456732-6456265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 14

               
               
               Conread position:12-466
               
               
               Cow position:chr15:37391950-37391507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 108

               
               
               Conread position:12-474
               
               
               Cow position:chr15:12614508-12614068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:303
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:12-481
               
               
               Cow position:chr15:44069235-44068785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:13-196
               
               
               Cow position:chr15:3038079-3038267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:13-473
               
               
               Cow position:chr15:44828256-44827802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 116

               
               
               Conread position:15-210
               
               
               Cow position:chr15:25789751-25789946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):143, 112

               
               
               Conread position:15-477
               
               
               Cow position:chr15:316890-317338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 118

               
               
               Conread position:15-492
               
               
               Cow position:chr15:327848-327384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 85

               
               
               Conread position:17-469
               
               
               Cow position:chr15:10888047-10887590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 97

               
               
               Conread position:24-217
               
               
               Cow position:chr15:6650617-6650808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 75

               
               
               Conread position:24-246
               
               
               Cow position:chr15:17682765-17682985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):204, 90

               
               
               Conread position:25-460
               
               
               Cow position:chr15:14583172-14583606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 90

               
               
               Conread position:41-476
               
               
               Cow position:chr15:11299305-11299710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):180, 24

               
               
               Conread position:49-489
               
               
               Cow position:chr15:4143355-4143810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):116, 76

               
               
               Conread position:64-474
               
               
               Cow position:chr15:21666629-21667025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:68-492
               
               
               Cow position:chr15:8673161-8673605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:97-489
               
               
               Cow position:chr15:2641056-2640643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:129-470
               
               
               Cow position:chr15:36627277-36627612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:131-438
               
               
               Cow position:chr15:52635490-52635188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:134-474
               
               
               Cow position:chr15:15266468-15266801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:149-487
               
               
               Cow position:chr15:53338369-53338033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:200-486
               
               
               Cow position:chr15:12272533-12272811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:200-492
               
               
               Cow position:chr15:8749489-8749204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:210-486
               
               
               Cow position:chr15:3262413-3262686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:216-468
               
               
               Cow position:chr15:3038244-3038481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:230-423
               
               
               Cow position:chr15:6184357-6184165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):154, 148

               
               
               Conread position:232-434
               
               
               Cow position:chr15:25790232-25790433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:232-441
               
               
               Cow position:chr15:23157861-23158059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):193, 62

               
               
               Conread position:265-424
               
               
               Cow position:chr15:21623336-21623179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:295-492
               
               
               Cow position:chr15:7233077-7232881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:300-492
               
               
               Cow position:chr15:17345136-17345326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:308-492
               
               
               Cow position:chr15:4807562-4807378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:309-423
               
               
               Cow position:chr15:4919950-4919838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:314-492
               
               
               Cow position:chr15:13520848-13520676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:329-488
               
               
               Cow position:chr15:4667515-4667357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr16:23982418-23982218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-207
               
               
               Cow position:chr16:6549415-6549620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):162, 64

               
               
               Conread position:1-226
               
               
               Cow position:chr16:14422821-14422599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):162, 124

               
               
               Conread position:1-239
               
               
               Cow position:chr16:9457633-9457401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:1-241
               
               
               Cow position:chr16:42740315-42740547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):162, 83

               
               
               Conread position:1-259
               
               
               Cow position:chr16:2239623-2239878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:1-265
               
               
               Cow position:chr16:15369540-15369284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):161, 42

               
               
               Conread position:1-328
               
               
               Cow position:chr16:9929664-9929340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):15, 174

               
               
               Conread position:1-432
               
               
               Cow position:chr16:54647433-54647033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1-454
               
               
               Cow position:chr16:2484029-2484471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:1-454
               
               
               Cow position:chr16:16687976-16687536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:1-457
               
               
               Cow position:chr16:29982373-29981935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:1-460
               
               
               Cow position:chr16:5888589-5888122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:1-468
               
               
               Cow position:chr16:20255204-20255646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 79

               
               
               Conread position:1-470
               
               
               Cow position:chr16:29676199-29676646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 99

               
               
               Conread position:1-474
               
               
               Cow position:chr16:1568347-1568796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 15

               
               
               Conread position:1-479
               
               
               Cow position:chr16:11052278-11051838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 11

               
               
               Conread position:1-479
               
               
               Cow position:chr16:49236008-49236476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 96

               
               
               Conread position:1-479
               
               
               Cow position:chr16:55111740-55112208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 67

               
               
               Conread position:1-481
               
               
               Cow position:chr16:29032023-29031558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 127

               
               
               Conread position:1-487
               
               
               Cow position:chr16:18688022-18688493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 34

               
               
               Conread position:1-492
               
               
               Cow position:chr16:10376163-10376663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:2-226
               
               
               Cow position:chr16:10437362-10437140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-237
               
               
               Cow position:chr16:26662855-26662625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-284
               
               
               Cow position:chr16:15491815-15491544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:2-314
               
               
               Cow position:chr16:25157111-25157419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 125

               
               
               Conread position:2-398
               
               
               Cow position:chr16:40887158-40887542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:2-468
               
               
               Cow position:chr16:19713742-19714183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 125

               
               
               Conread position:2-468
               
               
               Cow position:chr16:36282504-36282075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):120, 145

               
               
               Conread position:2-468
               
               
               Cow position:chr16:44965163-44964708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:2-472
               
               
               Cow position:chr16:36232498-36232956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:2-477
               
               
               Cow position:chr16:15183911-15183450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr16:7676589-7677064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-488
               
               
               Cow position:chr16:4303363-4303865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:3-453
               
               
               Cow position:chr16:7905747-7905330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 29

               
               
               Conread position:4-284
               
               
               Cow position:chr16:23253400-23253676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):217, 72

               
               
               Conread position:4-470
               
               
               Cow position:chr16:32935245-32934789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 103

               
               
               Conread position:6-244
               
               
               Cow position:chr16:47562793-47562564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:7-486
               
               
               Cow position:chr16:25341071-25340589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 5

               
               
               Conread position:7-492
               
               
               Cow position:chr16:25084723-25084248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:8-113
               
               
               Cow position:chr16:2411870-2411975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-284
               
               
               Cow position:chr16:24881588-24881864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 21

               
               
               Conread position:8-346
               
               
               Cow position:chr16:31592807-31593142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 87

               
               
               Conread position:8-363
               
               
               Cow position:chr16:5918584-5918230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:8-440
               
               
               Cow position:chr16:15565850-15565433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 122

               
               
               Conread position:8-466
               
               
               Cow position:chr16:407932-408376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 121

               
               
               Conread position:8-474
               
               
               Cow position:chr16:2728213-2728669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-476
               
               
               Cow position:chr16:28471996-28472452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr16:8817005-8817475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr16:9777231-9776765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr16:10204314-10204785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:8-486
               
               
               Cow position:chr16:29046120-29045660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 111

               
               
               Conread position:8-486
               
               
               Cow position:chr16:40297076-40297543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 41

               
               
               Conread position:8-486
               
               
               Cow position:chr16:49257468-49257964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:8-487
               
               
               Cow position:chr16:21185381-21184881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-488
               
               
               Cow position:chr16:31848-31362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:327
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):157, 56

               
               
               Conread position:8-489
               
               
               Cow position:chr16:6942722-6942220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr16:32605927-32605423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-492
               
               
               Cow position:chr16:1430327-1429841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 122

               
               
               Conread position:8-492
               
               
               Cow position:chr16:5660960-5660469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 110

               
               
               Conread position:9-366
               
               
               Cow position:chr16:43898170-43898515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 120

               
               
               Conread position:9-489
               
               
               Cow position:chr16:28171260-28171762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:11-419
               
               
               Cow position:chr16:42051258-42051646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 47

               
               
               Conread position:12-199
               
               
               Cow position:chr16:27734709-27734896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-466
               
               
               Cow position:chr16:25440714-25440270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:12-476
               
               
               Cow position:chr16:25458375-25458831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:12-492
               
               
               Cow position:chr16:12538829-12539299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:15-477
               
               
               Cow position:chr16:51685536-51685095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:39-282
               
               
               Cow position:chr16:31376165-31376399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:39-466
               
               
               Cow position:chr16:14666719-14667132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 90

               
               
               Conread position:42-470
               
               
               Cow position:chr16:39818692-39818285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 137

               
               
               Conread position:44-200
               
               
               Cow position:chr16:5483260-5483414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 75

               
               
               Conread position:85-456
               
               
               Cow position:chr16:51083596-51083234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:87-432
               
               
               Cow position:chr16:12302410-12302769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:129-492
               
               
               Cow position:chr16:2412037-2412390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:140-420
               
               
               Cow position:chr16:37446384-37446648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:186-474
               
               
               Cow position:chr16:334913-334635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:195-486
               
               
               Cow position:chr16:26661589-26661306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:210-460
               
               
               Cow position:chr16:44673907-44673659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:253-492
               
               
               Cow position:chr16:15369145-15368913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:256-486
               
               
               Cow position:chr16:7483346-7483115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:295-492
               
               
               Cow position:chr16:2240225-2240421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:295-492
               
               
               Cow position:chr16:34527568-34527372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:304-476
               
               
               Cow position:chr16:44388714-44388887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:312-477
               
               
               Cow position:chr16:25152642-25152479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):62, 72

               
               
               Conread position:336-486
               
               
               Cow position:chr16:31593351-31593502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:1-207
               
               
               Cow position:chr17:35591898-35591702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):161, 88

               
               
               Conread position:1-210
               
               
               Cow position:chr17:28109769-28109570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):162, 44

               
               
               Conread position:1-217
               
               
               Cow position:chr17:16889808-16889599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1-226
               
               
               Cow position:chr17:14325811-14326038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):158, 22

               
               
               Conread position:1-355
               
               
               Cow position:chr17:20401365-20401013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:1-468
               
               
               Cow position:chr17:152783-153226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:311
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:1-468
               
               
               Cow position:chr17:32024513-32024945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):445, 15

               
               
               Conread position:1-470
               
               
               Cow position:chr17:22429799-22430228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):383, 82

               
               
               Conread position:1-470
               
               
               Cow position:chr17:27345488-27345047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1-489
               
               
               Cow position:chr17:1383127-1383637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:2-182
               
               
               Cow position:chr17:20088071-20088253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:2-242
               
               
               Cow position:chr17:23857350-23857606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 223

               
               
               Conread position:2-468
               
               
               Cow position:chr17:1284075-1284522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 125

               
               
               Conread position:2-470
               
               
               Cow position:chr17:4081335-4080871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 269

               
               
               Conread position:2-472
               
               
               Cow position:chr17:2588018-2587548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):91, 284

               
               
               Conread position:2-486
               
               
               Cow position:chr17:11088040-11088526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:4-487
               
               
               Cow position:chr17:9653768-9654273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:6-486
               
               
               Cow position:chr17:6259379-6258916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 39

               
               
               Conread position:7-407
               
               
               Cow position:chr17:2287054-2286677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 120

               
               
               Conread position:7-465
               
               
               Cow position:chr17:3643159-3643591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 122

               
               
               Conread position:7-466
               
               
               Cow position:chr17:15322507-15322067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 5

               
               
               Conread position:7-486
               
               
               Cow position:chr17:13857096-13857578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 112

               
               
               Conread position:7-489
               
               
               Cow position:chr17:43988215-43987697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:342
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):83, 408

               
               
               Conread position:8-157
               
               
               Cow position:chr17:2738054-2737907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:8-225
               
               
               Cow position:chr17:15435467-15435255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):157, 78

               
               
               Conread position:8-266
               
               
               Cow position:chr17:25737339-25737080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:8-283
               
               
               Cow position:chr17:14893837-14893565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:8-317
               
               
               Cow position:chr17:24633633-24633323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-433
               
               
               Cow position:chr17:2248905-2249324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-454
               
               
               Cow position:chr17:18104004-18104438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-461
               
               
               Cow position:chr17:4059784-4059342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:8-467
               
               
               Cow position:chr17:228625-229092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:8-477
               
               
               Cow position:chr17:13929344-13928896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 102

               
               
               Conread position:8-477
               
               
               Cow position:chr17:19269686-19270128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:8-486
               
               
               Cow position:chr17:2579235-2578770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 14

               
               
               Conread position:8-486
               
               
               Cow position:chr17:16859880-16860367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):108, 212

               
               
               Conread position:8-487
               
               
               Cow position:chr17:2261786-2261298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 101

               
               
               Conread position:8-489
               
               
               Cow position:chr17:6089485-6089945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:325
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):243, 111

               
               
               Conread position:8-489
               
               
               Cow position:chr17:11783047-11782546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr17:14217348-14217851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr17:20666050-20666546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 122

               
               
               Conread position:8-489
               
               
               Cow position:chr17:22160592-22160090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-492
               
               
               Cow position:chr17:15157283-15157775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 102

               
               
               Conread position:8-492
               
               
               Cow position:chr17:15370753-15370299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 45

               
               
               Conread position:8-492
               
               
               Cow position:chr17:24780724-24780225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:12-226
               
               
               Cow position:chr17:39933358-39933147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):114, 60

               
               
               Conread position:12-423
               
               
               Cow position:chr17:55010-55387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 61

               
               
               Conread position:12-443
               
               
               Cow position:chr17:40804071-40803646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 70

               
               
               Conread position:12-470
               
               
               Cow position:chr17:44853256-44853671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:12-484
               
               
               Cow position:chr17:31200393-31200858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:12-489
               
               
               Cow position:chr17:8208782-8208284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 88

               
               
               Conread position:15-317
               
               
               Cow position:chr17:249591-249295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):148, 44

               
               
               Conread position:15-492
               
               
               Cow position:chr17:15143694-15144188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:338
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:16-381
               
               
               Cow position:chr17:22131610-22131274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):112, 90

               
               
               Conread position:16-474
               
               
               Cow position:chr17:2146878-2146444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:25-474
               
               
               Cow position:chr17:12670679-12671102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):138, 83

               
               
               Conread position:32-492
               
               
               Cow position:chr17:6119803-6119322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:64-476
               
               
               Cow position:chr17:1945798-1945407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:80-313
               
               
               Cow position:chr17:31768666-31768901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:97-489
               
               
               Cow position:chr17:181204-180808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:146-486
               
               
               Cow position:chr17:1879085-1878747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:150-466
               
               
               Cow position:chr17:42264090-42263793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:199-477
               
               
               Cow position:chr17:3694182-3694466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:230-468
               
               
               Cow position:chr17:455390-455627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:241-470
               
               
               Cow position:chr17:15417299-15417076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:244-453
               
               
               Cow position:chr17:35591696-35591493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:277-489
               
               
               Cow position:chr17:20024437-20024229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:295-492
               
               
               Cow position:chr17:1775136-1775327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):181, 73

               
               
               Conread position:300-492
               
               
               Cow position:chr17:249076-248897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:300-492
               
               
               Cow position:chr17:16889557-16889368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:304-492
               
               
               Cow position:chr17:20088482-20088664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:308-486
               
               
               Cow position:chr17:25736847-25736670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):164, 12

               
               
               Conread position:1-210
               
               
               Cow position:chr18:17992671-17992879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):162, 28

               
               
               Conread position:1-210
               
               
               Cow position:chr18:33268732-33268526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):114, 126

               
               
               Conread position:1-210
               
               
               Cow position:chr18:51310475-51310269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:1-217
               
               
               Cow position:chr18:1521020-1520804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:1-217
               
               
               Cow position:chr18:2019791-2020005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:1-227
               
               
               Cow position:chr18:47719674-47719903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 130

               
               
               Conread position:1-423
               
               
               Cow position:chr18:23944480-23944869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 112

               
               
               Conread position:1-423
               
               
               Cow position:chr18:39748473-39748080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:1-429
               
               
               Cow position:chr18:48221768-48221375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 76

               
               
               Conread position:1-444
               
               
               Cow position:chr18:35335380-35334957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 116

               
               
               Conread position:1-468
               
               
               Cow position:chr18:33358758-33358311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 17

               
               
               Conread position:1-470
               
               
               Cow position:chr18:51257874-51257443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:1-486
               
               
               Cow position:chr18:36508224-36507745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 128

               
               
               Conread position:1-486
               
               
               Cow position:chr18:43147033-43147495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 127

               
               
               Conread position:1-492
               
               
               Cow position:chr18:25349930-25349454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:2-199
               
               
               Cow position:chr18:27986920-27986722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:2-464
               
               
               Cow position:chr18:28974011-28974457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:2-466
               
               
               Cow position:chr18:54024467-54024928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:2-486
               
               
               Cow position:chr18:37504954-37504484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr18:54002384-54001879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:332
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:4-193
               
               
               Cow position:chr18:51464582-51464770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 120

               
               
               Conread position:6-210
               
               
               Cow position:chr18:32293660-32293459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):156, 7

               
               
               Conread position:6-492
               
               
               Cow position:chr18:16078590-16078087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 125

               
               
               Conread position:7-226
               
               
               Cow position:chr18:14415863-14415646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):152, 5

               
               
               Conread position:7-413
               
               
               Cow position:chr18:51480725-51480330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 122

               
               
               Conread position:7-460
               
               
               Cow position:chr18:33335755-33335310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 5

               
               
               Conread position:7-487
               
               
               Cow position:chr18:16660119-16660592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 123

               
               
               Conread position:8-206
               
               
               Cow position:chr18:32651881-32651682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:8-223
               
               
               Cow position:chr18:22602371-22602157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-260
               
               
               Cow position:chr18:54171959-54172212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:8-316
               
               
               Cow position:chr18:47741902-47741593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-429
               
               
               Cow position:chr18:14130178-14129770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr18:16176722-16177200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr18:23797535-23797069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr18:41840941-41841411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-488
               
               
               Cow position:chr18:35288134-35287667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 57

               
               
               Conread position:8-488
               
               
               Cow position:chr18:55089041-55089541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr18:33953684-33954188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:8-489
               
               
               Cow position:chr18:37585779-37586281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr18:44621643-44621140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 98

               
               
               Conread position:8-489
               
               
               Cow position:chr18:51660301-51659809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-492
               
               
               Cow position:chr18:11275216-11275700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 86

               
               
               Conread position:8-492
               
               
               Cow position:chr18:19352270-19351756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 206

               
               
               Conread position:9-211
               
               
               Cow position:chr18:40478266-40478066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):132, 110

               
               
               Conread position:15-460
               
               
               Cow position:chr18:45958571-45958145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 92

               
               
               Conread position:16-486
               
               
               Cow position:chr18:27838427-27838884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 103

               
               
               Conread position:18-269
               
               
               Cow position:chr18:9186889-9187139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:36-372
               
               
               Cow position:chr18:42244699-42245014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:64-489
               
               
               Cow position:chr18:29236607-29236183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:78-489
               
               
               Cow position:chr18:23746158-23746589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:138-460
               
               
               Cow position:chr18:43200549-43200237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:179-457
               
               
               Cow position:chr18:17993021-17993295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):205, 157

               
               
               Conread position:188-466
               
               
               Cow position:chr18:27986624-27986357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:188-486
               
               
               Cow position:chr18:40477849-40477562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:200-492
               
               
               Cow position:chr18:32651643-32651361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:230-468
               
               
               Cow position:chr18:30198345-30198109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):141, 26

               
               
               Conread position:241-453
               
               
               Cow position:chr18:32293454-32293242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):128, 172

               
               
               Conread position:249-492
               
               
               Cow position:chr18:54172421-54172657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 164

               
               
               Conread position:256-453
               
               
               Cow position:chr18:2020244-2020439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 108

               
               
               Conread position:304-492
               
               
               Cow position:chr18:33268483-33268296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr19:30372177-30371956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 24

               
               
               Conread position:1-423
               
               
               Cow position:chr19:29209456-29209059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 41

               
               
               Conread position:1-453
               
               
               Cow position:chr19:4532848-4533299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:1-470
               
               
               Cow position:chr19:416548-416104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:1-471
               
               
               Cow position:chr19:4252463-4252911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 12

               
               
               Conread position:1-474
               
               
               Cow position:chr19:359609-360084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):163, 29

               
               
               Conread position:1-492
               
               
               Cow position:chr19:34319-33836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:1-492
               
               
               Cow position:chr19:37795-37287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:1-492
               
               
               Cow position:chr19:7341967-7341460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:2-207
               
               
               Cow position:chr19:32665427-32665222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):161, 125

               
               
               Conread position:2-210
               
               
               Cow position:chr19:39688440-39688236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:2-260
               
               
               Cow position:chr19:32183551-32183809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:2-467
               
               
               Cow position:chr19:35376451-35376009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:2-476
               
               
               Cow position:chr19:36477250-36476794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):157, 85

               
               
               Conread position:4-478
               
               
               Cow position:chr19:40887752-40888202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:4-486
               
               
               Cow position:chr19:39390413-39389950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:4-489
               
               
               Cow position:chr19:43143612-43143106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:6-474
               
               
               Cow position:chr19:439756-440198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 123

               
               
               Conread position:7-241
               
               
               Cow position:chr19:170851-171086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):117, 202

               
               
               Conread position:7-318
               
               
               Cow position:chr19:548280-547969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):150, 5

               
               
               Conread position:7-361
               
               
               Cow position:chr19:30755066-30754715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):80, 119

               
               
               Conread position:7-454
               
               
               Cow position:chr19:203853-203421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:8-316
               
               
               Cow position:chr19:28593165-28592869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:8-332
               
               
               Cow position:chr19:377984-378310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):95, 216

               
               
               Conread position:8-363
               
               
               Cow position:chr19:32244568-32244209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-409
               
               
               Cow position:chr19:28581766-28582137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:8-456
               
               
               Cow position:chr19:172099-171666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr19:10672418-10672864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-470
               
               
               Cow position:chr19:35979157-35978710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:295
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):151, 115

               
               
               Conread position:8-473
               
               
               Cow position:chr19:55078634-55078185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr19:6553282-6552830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 79

               
               
               Conread position:8-489
               
               
               Cow position:chr19:32193465-32192970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:8-489
               
               
               Cow position:chr19:52152373-52152857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:8-492
               
               
               Cow position:chr19:685732-685235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):95, 214

               
               
               Conread position:8-492
               
               
               Cow position:chr19:40852542-40853015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:9-459
               
               
               Cow position:chr19:76348-76793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:9-466
               
               
               Cow position:chr19:4385372-4384920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 120

               
               
               Conread position:12-210
               
               
               Cow position:chr19:7488197-7487999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-423
               
               
               Cow position:chr19:1031993-1031613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):282, 77

               
               
               Conread position:12-457
               
               
               Cow position:chr19:350682-351102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:12-466
               
               
               Cow position:chr19:33941496-33941059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-469
               
               
               Cow position:chr19:32223544-32223979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 83

               
               
               Conread position:12-474
               
               
               Cow position:chr19:42649188-42649627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):150, 81

               
               
               Conread position:12-489
               
               
               Cow position:chr19:32212183-32212674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 97

               
               
               Conread position:12-492
               
               
               Cow position:chr19:772483-771998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 41

               
               
               Conread position:13-474
               
               
               Cow position:chr19:20125507-20125092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:316
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:16-492
               
               
               Cow position:chr19:261315-260844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 43

               
               
               Conread position:17-252
               
               
               Cow position:chr19:893724-893955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 68

               
               
               Conread position:18-466
               
               
               Cow position:chr19:33873117-33872686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 101

               
               
               Conread position:19-492
               
               
               Cow position:chr19:32237987-32238417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:322
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:49-201
               
               
               Cow position:chr19:25622570-25622722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:53-488
               
               
               Cow position:chr19:801834-801425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:65-456
               
               
               Cow position:chr19:544059-544455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 65

               
               
               Conread position:74-482
               
               
               Cow position:chr19:27053012-27053407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:104-475
               
               
               Cow position:chr19:1492250-1492602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:126-489
               
               
               Cow position:chr19:495498-495116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:131-488
               
               
               Cow position:chr19:561937-562285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:179-477
               
               
               Cow position:chr19:893843-894128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:200-486
               
               
               Cow position:chr19:7487757-7487483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:218-492
               
               
               Cow position:chr19:352963-353224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:232-488
               
               
               Cow position:chr19:24748637-24748369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:239-467
               
               
               Cow position:chr19:39546337-39546115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 137

               
               
               Conread position:300-492
               
               
               Cow position:chr19:39687624-39687433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:306-453
               
               
               Cow position:chr19:32665168-32665022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr2:6772825-6773006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):162, 62

               
               
               Conread position:1-206
               
               
               Cow position:chr2:46946010-46945796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr2:422405-422199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):162, 134

               
               
               Conread position:1-210
               
               
               Cow position:chr2:11969424-11969623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):157, 45

               
               
               Conread position:1-210
               
               
               Cow position:chr2:52152514-52152723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-210
               
               
               Cow position:chr2:52655811-52655603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-216
               
               
               Cow position:chr2:41172027-41171820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):163, 71

               
               
               Conread position:1-224
               
               
               Cow position:chr2:44346053-44345831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):162, 123

               
               
               Conread position:1-252
               
               
               Cow position:chr2:5870991-5871240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:1-260
               
               
               Cow position:chr2:73191173-73190918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:1-281
               
               
               Cow position:chr2:4235514-4235247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 74

               
               
               Conread position:1-390
               
               
               Cow position:chr2:2357119-2357502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 31

               
               
               Conread position:1-409
               
               
               Cow position:chr2:50983890-50984283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-418
               
               
               Cow position:chr2:10843998-10844394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 126

               
               
               Conread position:1-455
               
               
               Cow position:chr2:41149383-41148957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 57

               
               
               Conread position:1-456
               
               
               Cow position:chr2:20903795-20904217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 11

               
               
               Conread position:1-457
               
               
               Cow position:chr2:63293235-63293673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):108, 127

               
               
               Conread position:1-464
               
               
               Cow position:chr2:6877829-6877389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 19

               
               
               Conread position:1-468
               
               
               Cow position:chr2:2363491-2363047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 87

               
               
               Conread position:1-470
               
               
               Cow position:chr2:202313-202779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 109

               
               
               Conread position:1-473
               
               
               Cow position:chr2:85068914-85069362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:1-474
               
               
               Cow position:chr2:3730072-3729626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 105

               
               
               Conread position:1-474
               
               
               Cow position:chr2:42333929-42334382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:319
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:1-474
               
               
               Cow position:chr2:75676533-75676982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):162, 105

               
               
               Conread position:1-477
               
               
               Cow position:chr2:32388904-32388433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:1-477
               
               
               Cow position:chr2:54649460-54649920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 99

               
               
               Conread position:1-487
               
               
               Cow position:chr2:14560535-14560031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 430

               
               
               Conread position:1-487
               
               
               Cow position:chr2:44935744-44936216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 11

               
               
               Conread position:1-489
               
               
               Cow position:chr2:25031138-25031631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 90

               
               
               Conread position:1-492
               
               
               Cow position:chr2:1673312-1673786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:1-492
               
               
               Cow position:chr2:16288590-16288107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 58

               
               
               Conread position:1-492
               
               
               Cow position:chr2:49604068-49603587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 64

               
               
               Conread position:1-492
               
               
               Cow position:chr2:51305566-51306011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 106

               
               
               Conread position:1-492
               
               
               Cow position:chr2:57334542-57334033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 122

               
               
               Conread position:1-492
               
               
               Cow position:chr2:67421503-67422004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:2-226
               
               
               Cow position:chr2:15578321-15578538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):5, 11

               
               
               Conread position:2-269
               
               
               Cow position:chr2:25888868-25889137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):113, 10

               
               
               Conread position:2-394
               
               
               Cow position:chr2:85356430-85356795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):161, 125

               
               
               Conread position:2-423
               
               
               Cow position:chr2:72922493-72922896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):155, 14

               
               
               Conread position:2-466
               
               
               Cow position:chr2:10269322-10269792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-470
               
               
               Cow position:chr2:2102129-2102563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 10

               
               
               Conread position:2-472
               
               
               Cow position:chr2:3749245-3748792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:313
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):156, 14

               
               
               Conread position:2-476
               
               
               Cow position:chr2:53329087-53328626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-481
               
               
               Cow position:chr2:52062005-52061541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-484
               
               
               Cow position:chr2:47810350-47809886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr2:975935-976404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 14

               
               
               Conread position:2-486
               
               
               Cow position:chr2:44991941-44992420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:2-488
               
               
               Cow position:chr2:78761814-78761350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:2-491
               
               
               Cow position:chr2:2380464-2379955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:3-272
               
               
               Cow position:chr2:20921445-20921698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:3-460
               
               
               Cow position:chr2:32458671-32459125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 107

               
               
               Conread position:4-207
               
               
               Cow position:chr2:82166952-82166749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):111, 123

               
               
               Conread position:4-492
               
               
               Cow position:chr2:5481298-5481764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 132

               
               
               Conread position:5-469
               
               
               Cow position:chr2:28792391-28791941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:6-477
               
               
               Cow position:chr2:10186890-10187348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 10

               
               
               Conread position:6-486
               
               
               Cow position:chr2:81256139-81255669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 94

               
               
               Conread position:6-492
               
               
               Cow position:chr2:32654683-32654200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 29

               
               
               Conread position:7-385
               
               
               Cow position:chr2:24145608-24145243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 80

               
               
               Conread position:7-489
               
               
               Cow position:chr2:47604464-47604936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 66

               
               
               Conread position:8-198
               
               
               Cow position:chr2:49471577-49471388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-199
               
               
               Cow position:chr2:50076935-50076744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-226
               
               
               Cow position:chr2:5905517-5905734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):155, 121

               
               
               Conread position:8-260
               
               
               Cow position:chr2:11159796-11160048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-290
               
               
               Cow position:chr2:5519659-5519942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-317
               
               
               Cow position:chr2:212898-213202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):157, 79

               
               
               Conread position:8-317
               
               
               Cow position:chr2:26865212-26865518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):105, 86

               
               
               Conread position:8-409
               
               
               Cow position:chr2:10733504-10733892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 86

               
               
               Conread position:8-427
               
               
               Cow position:chr2:41685844-41685401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-429
               
               
               Cow position:chr2:45213925-45214334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-459
               
               
               Cow position:chr2:6960076-6959634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 122

               
               
               Conread position:8-466
               
               
               Cow position:chr2:8117583-8117125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 211

               
               
               Conread position:8-469
               
               
               Cow position:chr2:12224818-12225259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 111

               
               
               Conread position:8-473
               
               
               Cow position:chr2:283362-283797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-475
               
               
               Cow position:chr2:80956312-80956792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:8-477
               
               
               Cow position:chr2:42672053-42672535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 121

               
               
               Conread position:8-485
               
               
               Cow position:chr2:2184926-2185389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-486
               
               
               Cow position:chr2:16899576-16899106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr2:19009564-19009096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 74

               
               
               Conread position:8-486
               
               
               Cow position:chr2:24921676-24921208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 27

               
               
               Conread position:8-486
               
               
               Cow position:chr2:28650894-28651364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 117

               
               
               Conread position:8-486
               
               
               Cow position:chr2:65939116-65939579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr2:75251093-75250660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 87

               
               
               Conread position:8-487
               
               
               Cow position:chr2:27817107-27816604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr2:176198-176675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:321
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:8-489
               
               
               Cow position:chr2:9907243-9906761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:338
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):219, 10

               
               
               Conread position:8-489
               
               
               Cow position:chr2:26921027-26920526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr2:41656419-41655918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr2:44090630-44090135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 102

               
               
               Conread position:8-489
               
               
               Cow position:chr2:57142356-57142857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-492
               
               
               Cow position:chr2:2413466-2413964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 110

               
               
               Conread position:8-492
               
               
               Cow position:chr2:47039078-47039578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:8-492
               
               
               Cow position:chr2:59414349-59414835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):96, 107

               
               
               Conread position:9-194
               
               
               Cow position:chr2:16076966-16077152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:9-423
               
               
               Cow position:chr2:1491091-1491472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:9-475
               
               
               Cow position:chr2:52615801-52615314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 114

               
               
               Conread position:9-489
               
               
               Cow position:chr2:51991201-51991701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 40

               
               
               Conread position:12-219
               
               
               Cow position:chr2:28644056-28644268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):150, 83

               
               
               Conread position:12-239
               
               
               Cow position:chr2:80516396-80516174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:12-455
               
               
               Cow position:chr2:56438394-56438822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 11

               
               
               Conread position:12-474
               
               
               Cow position:chr2:38589511-38589063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 78

               
               
               Conread position:12-477
               
               
               Cow position:chr2:36031731-36032190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:12-477
               
               
               Cow position:chr2:36979430-36978972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 118

               
               
               Conread position:12-486
               
               
               Cow position:chr2:22077115-22076655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 92

               
               
               Conread position:12-489
               
               
               Cow position:chr2:54736950-54736460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 97

               
               
               Conread position:12-492
               
               
               Cow position:chr2:78741461-78741005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 70

               
               
               Conread position:13-472
               
               
               Cow position:chr2:782408-782852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 67

               
               
               Conread position:15-489
               
               
               Cow position:chr2:39420919-39420425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 192

               
               
               Conread position:16-489
               
               
               Cow position:chr2:3325244-3325738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 110

               
               
               Conread position:18-486
               
               
               Cow position:chr2:13046357-13046818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 111

               
               
               Conread position:37-204
               
               
               Cow position:chr2:44166043-44166209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:64-482
               
               
               Cow position:chr2:7901342-7900927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:64-492
               
               
               Cow position:chr2:40245124-40244730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:68-428
               
               
               Cow position:chr2:34567417-34567774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:70-489
               
               
               Cow position:chr2:6879448-6879040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:126-486
               
               
               Cow position:chr2:5485736-5486079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:129-474
               
               
               Cow position:chr2:7210641-7210309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:163-474
               
               
               Cow position:chr2:25244551-25244248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:183-489
               
               
               Cow position:chr2:40962987-40963293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 230

               
               
               Conread position:183-492
               
               
               Cow position:chr2:50074418-50074121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:184-486
               
               
               Cow position:chr2:53983984-53984271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:214-492
               
               
               Cow position:chr2:28621919-28622215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:233-492
               
               
               Cow position:chr2:46945656-46945409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):213, 58

               
               
               Conread position:237-471
               
               
               Cow position:chr2:11969908-11970139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):209, 25

               
               
               Conread position:248-491
               
               
               Cow position:chr2:15578848-15579102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 18

               
               
               Conread position:249-457
               
               
               Cow position:chr2:82165254-82165051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:250-489
               
               
               Cow position:chr2:49470915-49470678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:251-423
               
               
               Cow position:chr2:5871364-5871541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:262-465
               
               
               Cow position:chr2:6773156-6773361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:273-492
               
               
               Cow position:chr2:16078288-16078504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:295-489
               
               
               Cow position:chr2:10493545-10493352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:295-489
               
               
               Cow position:chr2:36238048-36237855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-474
               
               
               Cow position:chr2:73190907-73190740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr20:5484042-5483831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr20:24614402-24614187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):162, 126

               
               
               Conread position:1-284
               
               
               Cow position:chr20:20905335-20905611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 57

               
               
               Conread position:1-470
               
               
               Cow position:chr20:28593595-28593132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 51

               
               
               Conread position:1-470
               
               
               Cow position:chr20:30684191-30683734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-476
               
               
               Cow position:chr20:29572331-29572798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):59, 68

               
               
               Conread position:1-477
               
               
               Cow position:chr20:21914178-21913726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-486
               
               
               Cow position:chr20:12438909-12439368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-488
               
               
               Cow position:chr20:3252281-3252752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 89

               
               
               Conread position:1-492
               
               
               Cow position:chr20:10102693-10103173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:1-492
               
               
               Cow position:chr20:15064621-15064121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:2-226
               
               
               Cow position:chr20:10846225-10846447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:2-472
               
               
               Cow position:chr20:8993966-8994415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:311
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:2-474
               
               
               Cow position:chr20:20755580-20756030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:2-486
               
               
               Cow position:chr20:5534792-5534324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr20:21393423-21392949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:6-472
               
               
               Cow position:chr20:822598-822117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:6-488
               
               
               Cow position:chr20:11276446-11276908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 5

               
               
               Conread position:8-115
               
               
               Cow position:chr20:19192283-19192390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-210
               
               
               Cow position:chr20:28565755-28565957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-225
               
               
               Cow position:chr20:5560870-5561086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-454
               
               
               Cow position:chr20:7116625-7117059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:8-465
               
               
               Cow position:chr20:18315734-18316184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:8-486
               
               
               Cow position:chr20:23469814-23470287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:8-486
               
               
               Cow position:chr20:23798727-23798253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 102

               
               
               Conread position:8-486
               
               
               Cow position:chr20:25851145-25851611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr20:27869042-27868574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 121

               
               
               Conread position:8-492
               
               
               Cow position:chr20:13762751-13762282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:12-207
               
               
               Cow position:chr20:3032777-3032584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):145, 36

               
               
               Conread position:12-473
               
               
               Cow position:chr20:8004672-8005121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-488
               
               
               Cow position:chr20:8313592-8314039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:315
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):150, 115

               
               
               Conread position:15-489
               
               
               Cow position:chr20:4799807-4800238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:329
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):175, 93

               
               
               Conread position:15-489
               
               
               Cow position:chr20:31124244-31123749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 111

               
               
               Conread position:16-209
               
               
               Cow position:chr20:3270554-3270367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):147, 7

               
               
               Conread position:16-489
               
               
               Cow position:chr20:19437795-19437314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 93

               
               
               Conread position:18-470
               
               
               Cow position:chr20:28160616-28160161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 112

               
               
               Conread position:19-284
               
               
               Cow position:chr20:29948020-29947754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 110

               
               
               Conread position:32-471
               
               
               Cow position:chr20:13758088-13757655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 246

               
               
               Conread position:41-488
               
               
               Cow position:chr20:13681279-13681702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:59-466
               
               
               Cow position:chr20:15291842-15291447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:68-466
               
               
               Cow position:chr20:35119032-35118650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 62

               
               
               Conread position:126-489
               
               
               Cow position:chr20:19192907-19192522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 193

               
               
               Conread position:188-404
               
               
               Cow position:chr20:9954582-9954777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:241-492
               
               
               Cow position:chr20:10846680-10846926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):44, 118

               
               
               Conread position:258-476
               
               
               Cow position:chr20:24614190-24613972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 155

               
               
               Conread position:264-468
               
               
               Cow position:chr20:5483816-5483618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:303-489
               
               
               Cow position:chr20:1058165-1058350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:304-474
               
               
               Cow position:chr20:15135357-15135188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:304-492
               
               
               Cow position:chr20:3032547-3032359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):124, 108

               
               
               Conread position:304-492
               
               
               Cow position:chr20:19006041-19006231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:1-210
               
               
               Cow position:chr21:4076818-4076609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:1-224
               
               
               Cow position:chr21:3615263-3615044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):161, 44

               
               
               Conread position:1-224
               
               
               Cow position:chr21:6699584-6699816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 130

               
               
               Conread position:1-313
               
               
               Cow position:chr21:11453681-11453994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:1-379
               
               
               Cow position:chr21:21517174-21516819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):161, 89

               
               
               Conread position:1-417
               
               
               Cow position:chr21:2501911-2501503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:1-468
               
               
               Cow position:chr21:2716710-2717141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):383, 55

               
               
               Conread position:1-468
               
               
               Cow position:chr21:13124024-13124454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:309
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):221, 89

               
               
               Conread position:1-471
               
               
               Cow position:chr21:2530155-2530597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:1-474
               
               
               Cow position:chr21:20744776-20745218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 96

               
               
               Conread position:1-488
               
               
               Cow position:chr21:2510627-2510121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr21:4222716-4223171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 113

               
               
               Conread position:1-489
               
               
               Cow position:chr21:12056025-12056528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr21:17572896-17572392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr21:47939451-47938985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:1-490
               
               
               Cow position:chr21:35596339-35595884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 27

               
               
               Conread position:2-275
               
               
               Cow position:chr21:34054942-34055216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 88

               
               
               Conread position:2-283
               
               
               Cow position:chr21:2789021-2789293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:2-325
               
               
               Cow position:chr21:23860754-23860425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:2-398
               
               
               Cow position:chr21:33755269-33754877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:2-486
               
               
               Cow position:chr21:10566647-10566170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr21:40271848-40272316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr21:2883764-2884249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 127

               
               
               Conread position:3-476
               
               
               Cow position:chr21:358986-358532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 103

               
               
               Conread position:4-317
               
               
               Cow position:chr21:26819045-26819359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:4-492
               
               
               Cow position:chr21:2416206-2415722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 8

               
               
               Conread position:6-260
               
               
               Cow position:chr21:30599948-30600202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:6-487
               
               
               Cow position:chr21:7267570-7268039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 108

               
               
               Conread position:8-197
               
               
               Cow position:chr21:30561766-30561577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-211
               
               
               Cow position:chr21:34292983-34292780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):155, 119

               
               
               Conread position:8-316
               
               
               Cow position:chr21:39425027-39424724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-453
               
               
               Cow position:chr21:3426453-3426044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:8-453
               
               
               Cow position:chr21:3778732-3778305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 122

               
               
               Conread position:8-486
               
               
               Cow position:chr21:145883-145422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:8-486
               
               
               Cow position:chr21:1191006-1190539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr21:28529580-28530077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 11

               
               
               Conread position:8-486
               
               
               Cow position:chr21:31559691-31560152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 87

               
               
               Conread position:8-489
               
               
               Cow position:chr21:2476546-2477045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr21:4090615-4090111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 119

               
               
               Conread position:8-489
               
               
               Cow position:chr21:11505550-11505051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 8

               
               
               Conread position:8-489
               
               
               Cow position:chr21:26638499-26638992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 99

               
               
               Conread position:8-489
               
               
               Cow position:chr21:27708726-27708224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr21:37044877-37044387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 75

               
               
               Conread position:8-492
               
               
               Cow position:chr21:5016064-5016567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:12-456
               
               
               Cow position:chr21:1292212-1292653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:12-486
               
               
               Cow position:chr21:10850040-10849575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-486
               
               
               Cow position:chr21:21947841-21948308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):151, 133

               
               
               Conread position:12-486
               
               
               Cow position:chr21:33251352-33250890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-486
               
               
               Cow position:chr21:48116068-48115606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-489
               
               
               Cow position:chr21:46915547-46915054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:13-216
               
               
               Cow position:chr21:9891570-9891369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):102, 114

               
               
               Conread position:15-488
               
               
               Cow position:chr21:2769505-2769965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 70

               
               
               Conread position:16-212
               
               
               Cow position:chr21:2674681-2674877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 111

               
               
               Conread position:16-423
               
               
               Cow position:chr21:4183494-4183085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 99

               
               
               Conread position:17-475
               
               
               Cow position:chr21:47948064-47947594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:18-470
               
               
               Cow position:chr21:34259258-34259688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 109

               
               
               Conread position:37-460
               
               
               Cow position:chr21:4590031-4590445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:53-317
               
               
               Cow position:chr21:39580641-39580376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 73

               
               
               Conread position:66-226
               
               
               Cow position:chr21:23811816-23811660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:70-488
               
               
               Cow position:chr21:19610018-19609579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 60

               
               
               Conread position:82-420
               
               
               Cow position:chr21:41953073-41952742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:90-487
               
               
               Cow position:chr21:2454600-2454184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:126-492
               
               
               Cow position:chr21:2542025-2542385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:129-474
               
               
               Cow position:chr21:35089547-35089205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:191-492
               
               
               Cow position:chr21:30561050-30560756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:245-488
               
               
               Cow position:chr21:3615050-3614819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):156, 40

               
               
               Conread position:249-468
               
               
               Cow position:chr21:29086239-29086025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:258-468
               
               
               Cow position:chr21:34292533-34292328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:272-492
               
               
               Cow position:chr21:23809480-23809261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:281-470
               
               
               Cow position:chr21:18820402-18820590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 102

               
               
               Conread position:304-473
               
               
               Cow position:chr21:30601739-30601903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:304-489
               
               
               Cow position:chr21:4455773-4455590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-190
               
               
               Cow position:chr22:32485534-32485718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):161, 123

               
               
               Conread position:1-197
               
               
               Cow position:chr22:158112-158312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr22:1319194-1318978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):162, 126

               
               
               Conread position:1-217
               
               
               Cow position:chr22:37067112-37067325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 127

               
               
               Conread position:1-242
               
               
               Cow position:chr22:41419886-41420128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:1-420
               
               
               Cow position:chr22:45880336-45880724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 82

               
               
               Conread position:1-423
               
               
               Cow position:chr22:1293698-1294112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 57

               
               
               Conread position:1-449
               
               
               Cow position:chr22:42771346-42770929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 113

               
               
               Conread position:1-456
               
               
               Cow position:chr22:15851137-15850680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 57

               
               
               Conread position:1-468
               
               
               Cow position:chr22:36534165-36534612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 127

               
               
               Conread position:1-468
               
               
               Cow position:chr22:39882377-39882815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 44

               
               
               Conread position:1-471
               
               
               Cow position:chr22:33350968-33350518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:319
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):92, 206

               
               
               Conread position:1-474
               
               
               Cow position:chr22:1047180-1046723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:1-474
               
               
               Cow position:chr22:7277321-7276861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 126

               
               
               Conread position:1-475
               
               
               Cow position:chr22:3306930-3307384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:1-489
               
               
               Cow position:chr22:5233503-5234007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 76

               
               
               Conread position:1-489
               
               
               Cow position:chr22:18475963-18476471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:1-489
               
               
               Cow position:chr22:44489689-44489185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:1-492
               
               
               Cow position:chr22:10910055-10910568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:2-252
               
               
               Cow position:chr22:309513-309275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 28

               
               
               Conread position:2-360
               
               
               Cow position:chr22:6503873-6504209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):161, 93

               
               
               Conread position:2-475
               
               
               Cow position:chr22:1285135-1285599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 11

               
               
               Conread position:2-486
               
               
               Cow position:chr22:39469719-39470194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:2-492
               
               
               Cow position:chr22:1321411-1320937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:3-452
               
               
               Cow position:chr22:13772586-13772142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 17

               
               
               Conread position:3-482
               
               
               Cow position:chr22:5672535-5672092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):159, 124

               
               
               Conread position:4-217
               
               
               Cow position:chr22:46853142-46852926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:4-488
               
               
               Cow position:chr22:44369821-44370323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:7-273
               
               
               Cow position:chr22:35943600-35943867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:7-463
               
               
               Cow position:chr22:46585519-46585971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 126

               
               
               Conread position:7-464
               
               
               Cow position:chr22:37073376-37073808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 5

               
               
               Conread position:7-473
               
               
               Cow position:chr22:31313136-31312684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 9

               
               
               Conread position:7-486
               
               
               Cow position:chr22:42990964-42990503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 122

               
               
               Conread position:7-487
               
               
               Cow position:chr22:5933187-5933675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:316
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 135

               
               
               Conread position:7-491
               
               
               Cow position:chr22:8136404-8136872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 71

               
               
               Conread position:7-492
               
               
               Cow position:chr22:327355-327857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 32

               
               
               Conread position:7-492
               
               
               Cow position:chr22:37265247-37264743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:335
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):117, 202

               
               
               Conread position:8-171
               
               
               Cow position:chr22:4065432-4065269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-216
               
               
               Cow position:chr22:36861739-36861947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-217
               
               
               Cow position:chr22:118024-118232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):154, 119

               
               
               Conread position:8-253
               
               
               Cow position:chr22:44353156-44353402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):150, 121

               
               
               Conread position:8-261
               
               
               Cow position:chr22:44395572-44395320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 27

               
               
               Conread position:8-274
               
               
               Cow position:chr22:31335241-31335506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 121

               
               
               Conread position:8-274
               
               
               Cow position:chr22:46635906-46636173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):155, 66

               
               
               Conread position:8-466
               
               
               Cow position:chr22:560908-561355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 122

               
               
               Conread position:8-466
               
               
               Cow position:chr22:17328948-17329391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-474
               
               
               Cow position:chr22:32348180-32348611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):376, 8

               
               
               Conread position:8-477
               
               
               Cow position:chr22:44933771-44933315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr22:19143908-19144376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 48

               
               
               Conread position:8-486
               
               
               Cow position:chr22:21589124-21588659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 117

               
               
               Conread position:8-488
               
               
               Cow position:chr22:5307909-5307407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr22:693423-692932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 62

               
               
               Conread position:8-489
               
               
               Cow position:chr22:1878583-1878127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:320
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):273, 89

               
               
               Conread position:8-489
               
               
               Cow position:chr22:3278562-3279059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 102

               
               
               Conread position:8-489
               
               
               Cow position:chr22:6985046-6984544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr22:24949621-24949119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr22:27309985-27310487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 106

               
               
               Conread position:8-490
               
               
               Cow position:chr22:35672564-35673067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-492
               
               
               Cow position:chr22:34168123-34167639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:9-464
               
               
               Cow position:chr22:526119-526563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 81

               
               
               Conread position:9-492
               
               
               Cow position:chr22:16200283-16199788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:12-423
               
               
               Cow position:chr22:36736557-36736169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 69

               
               
               Conread position:15-369
               
               
               Cow position:chr22:1270714-1271066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:15-376
               
               
               Cow position:chr22:37131435-37131091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 10

               
               
               Conread position:15-466
               
               
               Cow position:chr22:44457098-44456658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 114

               
               
               Conread position:15-489
               
               
               Cow position:chr22:10546435-10545940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 111

               
               
               Conread position:16-211
               
               
               Cow position:chr22:18816599-18816793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):146, 49

               
               
               Conread position:36-345
               
               
               Cow position:chr22:12732308-12732602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:56-489
               
               
               Cow position:chr22:6020569-6020126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 69

               
               
               Conread position:59-225
               
               
               Cow position:chr22:18930318-18930153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:65-486
               
               
               Cow position:chr22:36180879-36180456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 54

               
               
               Conread position:67-423
               
               
               Cow position:chr22:40380931-40380606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:97-432
               
               
               Cow position:chr22:44609342-44609011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:129-486
               
               
               Cow position:chr22:27386715-27387070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:160-373
               
               
               Cow position:chr22:48004307-48004096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:199-486
               
               
               Cow position:chr22:36862110-36862389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:237-475
               
               
               Cow position:chr22:6332275-6332050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:262-418
               
               
               Cow position:chr22:10077172-10077327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:265-458
               
               
               Cow position:chr22:46636443-46636635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:277-476
               
               
               Cow position:chr22:36266930-36266733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):149, 100

               
               
               Conread position:300-492
               
               
               Cow position:chr22:44353636-44353825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:304-454
               
               
               Cow position:chr22:18817178-18817327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:304-492
               
               
               Cow position:chr22:11030154-11029974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:335-473
               
               
               Cow position:chr22:12732826-12732963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-157
               
               
               Cow position:chr23:2725656-2725506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-168
               
               
               Cow position:chr23:8980690-8980857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-210
               
               
               Cow position:chr23:16481555-16481761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):162, 79

               
               
               Conread position:1-217
               
               
               Cow position:chr23:2765580-2765784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):161, 76

               
               
               Conread position:1-217
               
               
               Cow position:chr23:5779286-5779502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:1-226
               
               
               Cow position:chr23:1330487-1330711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 126

               
               
               Conread position:1-271
               
               
               Cow position:chr23:7273456-7273191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):161, 56

               
               
               Conread position:1-317
               
               
               Cow position:chr23:4359628-4359319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):161, 108

               
               
               Conread position:1-318
               
               
               Cow position:chr23:22875833-22876144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):202, 78

               
               
               Conread position:1-457
               
               
               Cow position:chr23:988842-989273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-479
               
               
               Cow position:chr23:2340201-2339740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:317
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):82, 117

               
               
               Conread position:1-492
               
               
               Cow position:chr23:5874973-5875429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 123

               
               
               Conread position:1-492
               
               
               Cow position:chr23:31595379-31595850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 89

               
               
               Conread position:2-371
               
               
               Cow position:chr23:19449826-19449455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 281

               
               
               Conread position:2-424
               
               
               Cow position:chr23:4276754-4276357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:2-459
               
               
               Cow position:chr23:19332599-19333052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 185

               
               
               Conread position:2-465
               
               
               Cow position:chr23:1025260-1025706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:2-469
               
               
               Cow position:chr23:1141356-1140911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr23:2027319-2027800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr23:19489337-19488846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 10

               
               
               Conread position:3-477
               
               
               Cow position:chr23:3013431-3012975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:6-454
               
               
               Cow position:chr23:15525407-15524981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 123

               
               
               Conread position:7-486
               
               
               Cow position:chr23:22147466-22147953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 123

               
               
               Conread position:7-486
               
               
               Cow position:chr23:36031577-36032049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:8-201
               
               
               Cow position:chr23:30636510-30636703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-253
               
               
               Cow position:chr23:31446606-31446361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-429
               
               
               Cow position:chr23:2716143-2715721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-452
               
               
               Cow position:chr23:15220106-15220533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 109

               
               
               Conread position:8-456
               
               
               Cow position:chr23:2795770-2796200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:8-465
               
               
               Cow position:chr23:3881903-3882345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr23:11778277-11777834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 145

               
               
               Conread position:8-474
               
               
               Cow position:chr23:16617059-16617496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 87

               
               
               Conread position:8-477
               
               
               Cow position:chr23:28913204-28912747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr23:4640833-4641298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr23:4815864-4815404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 41

               
               
               Conread position:8-486
               
               
               Cow position:chr23:27399295-27398831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-492
               
               
               Cow position:chr23:4434256-4433765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:338
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):154, 99

               
               
               Conread position:8-492
               
               
               Cow position:chr23:19950792-19951295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:8-492
               
               
               Cow position:chr23:20302003-20301499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-492
               
               
               Cow position:chr23:28217082-28216580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 97

               
               
               Conread position:9-491
               
               
               Cow position:chr23:14974978-14975474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 98

               
               
               Conread position:12-210
               
               
               Cow position:chr23:14966185-14966383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-467
               
               
               Cow position:chr23:4509893-4509441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 13

               
               
               Conread position:12-477
               
               
               Cow position:chr23:34174972-34174533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:15-226
               
               
               Cow position:chr23:967563-967773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):143, 114

               
               
               Conread position:16-210
               
               
               Cow position:chr23:2574349-2574155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):108, 113

               
               
               Conread position:20-175
               
               
               Cow position:chr23:6469495-6469650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):143, 109

               
               
               Conread position:65-466
               
               
               Cow position:chr23:2757236-2756850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:83-486
               
               
               Cow position:chr23:15176768-15176377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:169-474
               
               
               Cow position:chr23:4888397-4888107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:200-492
               
               
               Cow position:chr23:2573890-2573604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:230-417
               
               
               Cow position:chr23:8981230-8981414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:230-428
               
               
               Cow position:chr23:2045618-2045423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:268-492
               
               
               Cow position:chr23:810670-810448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:332-452
               
               
               Cow position:chr23:40460468-40460349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr24:36560199-36560396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):161, 46

               
               
               Conread position:1-317
               
               
               Cow position:chr24:12114148-12114462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:1-441
               
               
               Cow position:chr24:17187430-17187018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-466
               
               
               Cow position:chr24:12161763-12161310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:1-469
               
               
               Cow position:chr24:12131598-12132054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):162, 15

               
               
               Conread position:1-471
               
               
               Cow position:chr24:5993089-5993571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:1-472
               
               
               Cow position:chr24:16649416-16649889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 78

               
               
               Conread position:1-474
               
               
               Cow position:chr24:35841729-35842167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:317
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):162, 105

               
               
               Conread position:1-474
               
               
               Cow position:chr24:38635623-38635169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 24

               
               
               Conread position:1-474
               
               
               Cow position:chr24:39678314-39677861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:320
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):161, 6

               
               
               Conread position:1-478
               
               
               Cow position:chr24:6057555-6057098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:315
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):162, 94

               
               
               Conread position:1-488
               
               
               Cow position:chr24:6335583-6335095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:1-489
               
               
               Cow position:chr24:6645303-6644793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr24:12236942-12236460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:1-492
               
               
               Cow position:chr24:6145244-6144765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 128

               
               
               Conread position:2-217
               
               
               Cow position:chr24:35838742-35838957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 131

               
               
               Conread position:2-260
               
               
               Cow position:chr24:12086083-12085828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):157, 127

               
               
               Conread position:2-486
               
               
               Cow position:chr24:19833266-19832793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr24:37216609-37216124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:3-433
               
               
               Cow position:chr24:32125625-32126023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:4-252
               
               
               Cow position:chr24:36707740-36707493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:4-280
               
               
               Cow position:chr24:36297051-36296772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):154, 64

               
               
               Conread position:4-470
               
               
               Cow position:chr24:37301195-37301621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:309
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:5-474
               
               
               Cow position:chr24:1447450-1447000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 90

               
               
               Conread position:6-283
               
               
               Cow position:chr24:13181460-13181730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):120, 29

               
               
               Conread position:6-489
               
               
               Cow position:chr24:13021552-13021079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:6-492
               
               
               Cow position:chr24:14390843-14391316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 17

               
               
               Conread position:7-275
               
               
               Cow position:chr24:35990777-35991038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:7-466
               
               
               Cow position:chr24:33933246-33932781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 112

               
               
               Conread position:7-482
               
               
               Cow position:chr24:12797882-12798342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 89

               
               
               Conread position:8-219
               
               
               Cow position:chr24:12485440-12485650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-282
               
               
               Cow position:chr24:2635997-2635711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):158, 115

               
               
               Conread position:8-308
               
               
               Cow position:chr24:6083894-6083593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-315
               
               
               Cow position:chr24:7060979-7060681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:8-317
               
               
               Cow position:chr24:20268095-20267785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-317
               
               
               Cow position:chr24:44017423-44017113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-430
               
               
               Cow position:chr24:14873464-14873873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 117

               
               
               Conread position:8-456
               
               
               Cow position:chr24:15392426-15392869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 99

               
               
               Conread position:8-466
               
               
               Cow position:chr24:6352073-6351627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:309
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):114, 98

               
               
               Conread position:8-469
               
               
               Cow position:chr24:4415646-4416097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 129

               
               
               Conread position:8-470
               
               
               Cow position:chr24:12288845-12289295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 87

               
               
               Conread position:8-486
               
               
               Cow position:chr24:14384734-14385204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 105

               
               
               Conread position:8-489
               
               
               Cow position:chr24:6025218-6025721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:8-489
               
               
               Cow position:chr24:6434118-6433613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr24:9188854-9189353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-489
               
               
               Cow position:chr24:22793054-22792549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr24:33739467-33739967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 55

               
               
               Conread position:8-492
               
               
               Cow position:chr24:12224603-12225083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):139, 48

               
               
               Conread position:12-200
               
               
               Cow position:chr24:13531657-13531849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:12-240
               
               
               Cow position:chr24:13188061-13187842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):153, 97

               
               
               Conread position:12-474
               
               
               Cow position:chr24:32331214-32330768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:13-486
               
               
               Cow position:chr24:29186678-29186212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 116

               
               
               Conread position:36-487
               
               
               Cow position:chr24:7712449-7712913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 87

               
               
               Conread position:53-454
               
               
               Cow position:chr24:17314481-17314873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:56-474
               
               
               Cow position:chr24:148763-149168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 73

               
               
               Conread position:70-453
               
               
               Cow position:chr24:14583914-14583558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:100-317
               
               
               Cow position:chr24:16084893-16085106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:129-477
               
               
               Cow position:chr24:11156885-11157201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:160-469
               
               
               Cow position:chr24:9544552-9544259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:172-492
               
               
               Cow position:chr24:6083688-6083375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:183-489
               
               
               Cow position:chr24:10657735-10657430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:191-486
               
               
               Cow position:chr24:6357706-6357426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):262, 22

               
               
               Conread position:200-489
               
               
               Cow position:chr24:36560536-36560829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):27, 220

               
               
               Conread position:220-489
               
               
               Cow position:chr24:29306176-29306446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 196

               
               
               Conread position:228-423
               
               
               Cow position:chr24:13531852-13532046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 22

               
               
               Conread position:246-473
               
               
               Cow position:chr24:36707274-36707053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:295-492
               
               
               Cow position:chr24:13187108-13186911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:336-492
               
               
               Cow position:chr24:12114563-12114716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr25:34656604-34656801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 124

               
               
               Conread position:1-210
               
               
               Cow position:chr25:14016017-14015809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):161, 22

               
               
               Conread position:1-217
               
               
               Cow position:chr25:18027788-18028002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):161, 98

               
               
               Conread position:1-290
               
               
               Cow position:chr25:18411450-18411731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):162, 71

               
               
               Conread position:1-468
               
               
               Cow position:chr25:11375505-11375947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 126

               
               
               Conread position:1-470
               
               
               Cow position:chr25:18092860-18092398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 109

               
               
               Conread position:1-489
               
               
               Cow position:chr25:35362578-35363087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 125

               
               
               Conread position:1-492
               
               
               Cow position:chr25:8674756-8674291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 118

               
               
               Conread position:1-492
               
               
               Cow position:chr25:18275983-18276480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 125

               
               
               Conread position:1-492
               
               
               Cow position:chr25:18302618-18302136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 124

               
               
               Conread position:2-201
               
               
               Cow position:chr25:12943598-12943796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-423
               
               
               Cow position:chr25:17468854-17469258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 10

               
               
               Conread position:2-426
               
               
               Cow position:chr25:24171869-24171449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):160, 88

               
               
               Conread position:2-468
               
               
               Cow position:chr25:11933685-11934167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):161, 45

               
               
               Conread position:7-477
               
               
               Cow position:chr25:12759760-12760228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:8-236
               
               
               Cow position:chr25:20629411-20629181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-317
               
               
               Cow position:chr25:17589714-17590019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 85

               
               
               Conread position:8-317
               
               
               Cow position:chr25:20777063-20777374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):97, 109

               
               
               Conread position:8-363
               
               
               Cow position:chr25:25506484-25506140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-395
               
               
               Cow position:chr25:18890181-18890555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 121

               
               
               Conread position:8-428
               
               
               Cow position:chr25:26279100-26278703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 121

               
               
               Conread position:8-429
               
               
               Cow position:chr25:26867059-26866652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 123

               
               
               Conread position:8-457
               
               
               Cow position:chr25:20494196-20493763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:8-469
               
               
               Cow position:chr25:34347158-34347604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 57

               
               
               Conread position:8-473
               
               
               Cow position:chr25:19288513-19288963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):151, 79

               
               
               Conread position:8-486
               
               
               Cow position:chr25:22147328-22146865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 35

               
               
               Conread position:8-487
               
               
               Cow position:chr25:32579801-32579319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):157, 62

               
               
               Conread position:8-489
               
               
               Cow position:chr25:33991222-33991698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:316
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):109, 87

               
               
               Conread position:8-492
               
               
               Cow position:chr25:26922065-26921560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 121

               
               
               Conread position:12-457
               
               
               Cow position:chr25:23345872-23346297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:12-486
               
               
               Cow position:chr25:13780866-13780404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-488
               
               
               Cow position:chr25:19916913-19916425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):153, 94

               
               
               Conread position:32-473
               
               
               Cow position:chr25:34014536-34014962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 97

               
               
               Conread position:49-314
               
               
               Cow position:chr25:17563110-17563374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 72

               
               
               Conread position:49-461
               
               
               Cow position:chr25:17560801-17561217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 72

               
               
               Conread position:64-487
               
               
               Cow position:chr25:18173114-18172681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 33

               
               
               Conread position:67-273
               
               
               Cow position:chr25:32978983-32979191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 59

               
               
               Conread position:137-423
               
               
               Cow position:chr25:36239934-36239659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):90, 75

               
               
               Conread position:183-488
               
               
               Cow position:chr25:15444033-15443728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:224-365
               
               
               Cow position:chr25:34657351-34657492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:295-489
               
               
               Cow position:chr25:32979510-32979703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 88

               
               
               Conread position:304-487
               
               
               Cow position:chr25:12944194-12944379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):152, 111

               
               
               Conread position:308-489
               
               
               Cow position:chr25:20777398-20777577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr26:23605038-23605262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 157

               
               
               Conread position:1-242
               
               
               Cow position:chr26:6850312-6850551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-242
               
               
               Cow position:chr26:20254932-20254698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 62

               
               
               Conread position:1-317
               
               
               Cow position:chr26:24201485-24201167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-423
               
               
               Cow position:chr26:12574531-12574922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 209

               
               
               Conread position:1-456
               
               
               Cow position:chr26:3691668-3691243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):162, 24

               
               
               Conread position:1-489
               
               
               Cow position:chr26:30782631-30782122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:7-226
               
               
               Cow position:chr26:3074382-3074172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):155, 5

               
               
               Conread position:8-210
               
               
               Cow position:chr26:15144902-15145104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-225
               
               
               Cow position:chr26:18854943-18854734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):157, 99

               
               
               Conread position:8-260
               
               
               Cow position:chr26:5675025-5674772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:8-392
               
               
               Cow position:chr26:8869732-8869353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-423
               
               
               Cow position:chr26:2198482-2198065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):198, 102

               
               
               Conread position:8-466
               
               
               Cow position:chr26:9563503-9563945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr26:17397075-17397527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:8-488
               
               
               Cow position:chr26:11254202-11254706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 119

               
               
               Conread position:8-489
               
               
               Cow position:chr26:2352503-2352992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-489
               
               
               Cow position:chr26:3030955-3031450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 45

               
               
               Conread position:8-489
               
               
               Cow position:chr26:9112321-9111819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr26:12588710-12589206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:8-489
               
               
               Cow position:chr26:19998342-19997840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:9-216
               
               
               Cow position:chr26:16904635-16904434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:9-486
               
               
               Cow position:chr26:19351659-19352128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 120

               
               
               Conread position:12-282
               
               
               Cow position:chr26:12655797-12655540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):149, 20

               
               
               Conread position:12-492
               
               
               Cow position:chr26:9846283-9846759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 110

               
               
               Conread position:16-421
               
               
               Cow position:chr26:20262694-20262330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):143, 16

               
               
               Conread position:26-489
               
               
               Cow position:chr26:8918817-8918340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):139, 92

               
               
               Conread position:28-456
               
               
               Cow position:chr26:6516697-6516282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:49-492
               
               
               Cow position:chr26:34012835-34012400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:64-457
               
               
               Cow position:chr26:30590441-30590822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:87-476
               
               
               Cow position:chr26:9854331-9854711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 105

               
               
               Conread position:99-470
               
               
               Cow position:chr26:9850881-9851240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:278-476
               
               
               Cow position:chr26:16904236-16904040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:304-466
               
               
               Cow position:chr26:5674464-5674304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:304-490
               
               
               Cow position:chr26:6850705-6850893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):165, 111

               
               
               Conread position:1-210
               
               
               Cow position:chr27:15278266-15278475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):162, 113

               
               
               Conread position:1-217
               
               
               Cow position:chr27:27051463-27051248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):6, 12

               
               
               Conread position:1-466
               
               
               Cow position:chr27:5910665-5910214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 55

               
               
               Conread position:1-477
               
               
               Cow position:chr27:26324613-26324146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 128

               
               
               Conread position:1-482
               
               
               Cow position:chr27:26556179-26556656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 58

               
               
               Conread position:1-489
               
               
               Cow position:chr27:25002728-25003174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:327
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:2-486
               
               
               Cow position:chr27:893009-892541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr27:9993406-9993870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 16

               
               
               Conread position:8-418
               
               
               Cow position:chr27:13897987-13897584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 117

               
               
               Conread position:8-460
               
               
               Cow position:chr27:25999263-25999698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:8-465
               
               
               Cow position:chr27:27662686-27662241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-468
               
               
               Cow position:chr27:16439122-16438692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:8-473
               
               
               Cow position:chr27:25117036-25116589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:8-477
               
               
               Cow position:chr27:14460665-14461121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 41

               
               
               Conread position:8-486
               
               
               Cow position:chr27:1209143-1208678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 70

               
               
               Conread position:8-486
               
               
               Cow position:chr27:23334955-23334486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr27:15541120-15540632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr27:16034601-16035099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 66

               
               
               Conread position:8-492
               
               
               Cow position:chr27:2364543-2364030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:345
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:8-492
               
               
               Cow position:chr27:25805089-25805556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:9-472
               
               
               Cow position:chr27:21288419-21288879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:300
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:32-224
               
               
               Cow position:chr27:16432240-16432048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:32-466
               
               
               Cow position:chr27:5906798-5906380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 48

               
               
               Conread position:59-466
               
               
               Cow position:chr27:11471652-11472046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 34

               
               
               Conread position:74-219
               
               
               Cow position:chr27:23930417-23930562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:77-486
               
               
               Cow position:chr27:15638785-15639188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:140-492
               
               
               Cow position:chr27:5985433-5985774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):157, 26

               
               
               Conread position:230-405
               
               
               Cow position:chr27:15279045-15279220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:260-492
               
               
               Cow position:chr27:15331557-15331333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):124, 117

               
               
               Conread position:1-224
               
               
               Cow position:chr28:9953979-9953756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:1-290
               
               
               Cow position:chr28:9155442-9155709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:1-320
               
               
               Cow position:chr28:3773989-3774311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 123

               
               
               Conread position:1-474
               
               
               Cow position:chr28:34648779-34648332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:321
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:1-475
               
               
               Cow position:chr28:26007876-26007412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:1-476
               
               
               Cow position:chr28:2591763-2591321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:1-477
               
               
               Cow position:chr28:6657501-6657957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:313
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):227, 18

               
               
               Conread position:1-477
               
               
               Cow position:chr28:12150164-12149708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 11

               
               
               Conread position:1-487
               
               
               Cow position:chr28:1952977-1952475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:1-487
               
               
               Cow position:chr28:3192948-3193406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 73

               
               
               Conread position:1-492
               
               
               Cow position:chr28:15681736-15681278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-492
               
               
               Cow position:chr28:21325631-21325148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 17

               
               
               Conread position:1-492
               
               
               Cow position:chr28:21358862-21358380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 11

               
               
               Conread position:2-205
               
               
               Cow position:chr28:1815024-1815228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:2-460
               
               
               Cow position:chr28:1387550-1387994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-476
               
               
               Cow position:chr28:18089160-18089622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:310
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:2-477
               
               
               Cow position:chr28:8378408-8377941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:2-487
               
               
               Cow position:chr28:5812552-5812075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:4-474
               
               
               Cow position:chr28:22827893-22827440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 90

               
               
               Conread position:4-477
               
               
               Cow position:chr28:29819409-29818953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 8

               
               
               Conread position:5-194
               
               
               Cow position:chr28:7822093-7821915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):160, 90

               
               
               Conread position:5-486
               
               
               Cow position:chr28:5115240-5115707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:7-477
               
               
               Cow position:chr28:34593680-34593224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 122

               
               
               Conread position:7-492
               
               
               Cow position:chr28:10619262-10619740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 85

               
               
               Conread position:8-182
               
               
               Cow position:chr28:24587269-24587098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):153, 101

               
               
               Conread position:8-198
               
               
               Cow position:chr28:7901189-7901005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):154, 8

               
               
               Conread position:8-283
               
               
               Cow position:chr28:15920630-15920899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-423
               
               
               Cow position:chr28:7001824-7001436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 121

               
               
               Conread position:8-429
               
               
               Cow position:chr28:17388317-17387908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-442
               
               
               Cow position:chr28:14750384-14749951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-453
               
               
               Cow position:chr28:14705836-14706264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:8-457
               
               
               Cow position:chr28:18181519-18181941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):154, 87

               
               
               Conread position:8-465
               
               
               Cow position:chr28:32792543-32792979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr28:782234-781788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-473
               
               
               Cow position:chr28:18520625-18521083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 119

               
               
               Conread position:8-477
               
               
               Cow position:chr28:13459807-13459354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 106

               
               
               Conread position:8-486
               
               
               Cow position:chr28:5565697-5565228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr28:10582149-10582616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr28:13522563-13522103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr28:17667676-17668147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr28:22261315-22261774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr28:26426438-26426890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):448, 17

               
               
               Conread position:8-487
               
               
               Cow position:chr28:1168328-1168799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr28:13441041-13441543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr28:15950817-15950315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-492
               
               
               Cow position:chr28:6780493-6780992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 88

               
               
               Conread position:12-456
               
               
               Cow position:chr28:7817064-7816643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:12-474
               
               
               Cow position:chr28:2083436-2082987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-492
               
               
               Cow position:chr28:8721610-8722097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 119

               
               
               Conread position:15-492
               
               
               Cow position:chr28:5796650-5796182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 79

               
               
               Conread position:41-492
               
               
               Cow position:chr28:7790436-7790870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 87

               
               
               Conread position:49-487
               
               
               Cow position:chr28:489285-488826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 74

               
               
               Conread position:59-486
               
               
               Cow position:chr28:33252129-33251686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:64-395
               
               
               Cow position:chr28:7740035-7739714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:64-475
               
               
               Cow position:chr28:2990186-2990589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:64-486
               
               
               Cow position:chr28:5752380-5752793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:67-477
               
               
               Cow position:chr28:1504418-1504021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 62

               
               
               Conread position:68-466
               
               
               Cow position:chr28:15035640-15036026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:68-486
               
               
               Cow position:chr28:28973450-28973849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:72-476
               
               
               Cow position:chr28:10464077-10464463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:74-469
               
               
               Cow position:chr28:15378244-15378626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 56

               
               
               Conread position:78-487
               
               
               Cow position:chr28:24667380-24666979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:220-489
               
               
               Cow position:chr28:6663897-6663625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:230-468
               
               
               Cow position:chr28:4381760-4382002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 85

               
               
               Conread position:232-489
               
               
               Cow position:chr28:7821078-7820822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:1-253
               
               
               Cow position:chr29:14013281-14013030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:1-253
               
               
               Cow position:chr29:14073130-14073383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:1-317
               
               
               Cow position:chr29:15895038-15895354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:1-468
               
               
               Cow position:chr29:16769941-16769509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1-488
               
               
               Cow position:chr29:35296687-35296202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:2-111
               
               
               Cow position:chr29:13853211-13853321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:2-217
               
               
               Cow position:chr29:12796656-12796869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 62

               
               
               Conread position:2-423
               
               
               Cow position:chr29:11049092-11048690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:2-454
               
               
               Cow position:chr29:20250969-20250527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:2-466
               
               
               Cow position:chr29:34800000-34800432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:2-472
               
               
               Cow position:chr29:803519-803977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:2-473
               
               
               Cow position:chr29:10648438-10648890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-474
               
               
               Cow position:chr29:30811342-30810909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):161, 10

               
               
               Conread position:2-477
               
               
               Cow position:chr29:19623437-19623899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr29:45459526-45459056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:4-210
               
               
               Cow position:chr29:2468135-2468340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):159, 14

               
               
               Conread position:6-486
               
               
               Cow position:chr29:10824155-10824625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 90

               
               
               Conread position:7-429
               
               
               Cow position:chr29:32539613-32539204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 93

               
               
               Conread position:7-486
               
               
               Cow position:chr29:2689708-2689262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 112

               
               
               Conread position:7-492
               
               
               Cow position:chr29:5957406-5956915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 123

               
               
               Conread position:8-283
               
               
               Cow position:chr29:31121607-31121335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):111, 45

               
               
               Conread position:8-284
               
               
               Cow position:chr29:14368749-14368471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-317
               
               
               Cow position:chr29:28060864-28061174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-429
               
               
               Cow position:chr29:25932742-25933151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-454
               
               
               Cow position:chr29:6266692-6267125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 65

               
               
               Conread position:8-463
               
               
               Cow position:chr29:45587496-45587940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr29:23975634-23975191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr29:38226795-38226350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 27

               
               
               Conread position:8-468
               
               
               Cow position:chr29:27040958-27041393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 106

               
               
               Conread position:8-470
               
               
               Cow position:chr29:104377-103935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 17

               
               
               Conread position:8-474
               
               
               Cow position:chr29:48674-49127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-477
               
               
               Cow position:chr29:7431414-7431872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr29:2099646-2099178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 118

               
               
               Conread position:8-486
               
               
               Cow position:chr29:2841563-2842022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr29:21246370-21245907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 125

               
               
               Conread position:8-486
               
               
               Cow position:chr29:26165020-26165486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr29:40503177-40503646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr29:610809-611310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 197

               
               
               Conread position:8-489
               
               
               Cow position:chr29:15969346-15969839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:8-489
               
               
               Cow position:chr29:16109531-16109028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:8-489
               
               
               Cow position:chr29:27250533-27251032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:8-492
               
               
               Cow position:chr29:13578219-13577725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:337
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):157, 75

               
               
               Conread position:8-492
               
               
               Cow position:chr29:19652910-19652433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-492
               
               
               Cow position:chr29:43322361-43321878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 122

               
               
               Conread position:12-268
               
               
               Cow position:chr29:9643923-9644180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 117

               
               
               Conread position:12-477
               
               
               Cow position:chr29:39079908-39080361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 117

               
               
               Conread position:12-489
               
               
               Cow position:chr29:32315838-32315340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 108

               
               
               Conread position:12-492
               
               
               Cow position:chr29:2750589-2751053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:15-466
               
               
               Cow position:chr29:16022326-16021890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):129, 56

               
               
               Conread position:16-211
               
               
               Cow position:chr29:7840590-7840397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):149, 79

               
               
               Conread position:21-470
               
               
               Cow position:chr29:34751904-34752320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 86

               
               
               Conread position:24-252
               
               
               Cow position:chr29:43366211-43366430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 58

               
               
               Conread position:26-423
               
               
               Cow position:chr29:21543591-21543957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:86-489
               
               
               Cow position:chr29:21431617-21432020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:100-411
               
               
               Cow position:chr29:8663987-8663684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:126-487
               
               
               Cow position:chr29:18857101-18857484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 193

               
               
               Conread position:129-486
               
               
               Cow position:chr29:42650045-42649696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:129-486
               
               
               Cow position:chr29:42801905-42801556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:188-470
               
               
               Cow position:chr29:45464149-45464424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:230-468
               
               
               Cow position:chr29:10848504-10848742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):167, 183

               
               
               Conread position:234-456
               
               
               Cow position:chr29:1714702-1714488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:245-492
               
               
               Cow position:chr29:22318371-22318617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:262-487
               
               
               Cow position:chr29:9644603-9644816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:304-486
               
               
               Cow position:chr29:15984723-15984538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):152, 111

               
               
               Conread position:305-489
               
               
               Cow position:chr29:19884735-19884552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:329-489
               
               
               Cow position:chr29:43366696-43366854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:1-201
               
               
               Cow position:chr3:14588409-14588215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):162, 31

               
               
               Conread position:1-210
               
               
               Cow position:chr3:66119383-66119173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):86, 132

               
               
               Conread position:1-217
               
               
               Cow position:chr3:207433-207648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-217
               
               
               Cow position:chr3:42580238-42580453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):161, 120

               
               
               Conread position:1-217
               
               
               Cow position:chr3:77474489-77474276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-260
               
               
               Cow position:chr3:6782118-6781857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-317
               
               
               Cow position:chr3:32146357-32146673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-375
               
               
               Cow position:chr3:50128148-50128511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 70

               
               
               Conread position:1-423
               
               
               Cow position:chr3:5829902-5830290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 114

               
               
               Conread position:1-423
               
               
               Cow position:chr3:18729405-18729820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 177

               
               
               Conread position:1-453
               
               
               Cow position:chr3:56340693-56341150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 128

               
               
               Conread position:1-456
               
               
               Cow position:chr3:56650536-56650971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:1-468
               
               
               Cow position:chr3:2633655-2633212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):127, 98

               
               
               Conread position:1-468
               
               
               Cow position:chr3:5047457-5047891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):105, 89

               
               
               Conread position:1-470
               
               
               Cow position:chr3:64358438-64358901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 39

               
               
               Conread position:1-471
               
               
               Cow position:chr3:55229967-55230414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):139, 85

               
               
               Conread position:1-474
               
               
               Cow position:chr3:18357151-18357605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:312
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:1-474
               
               
               Cow position:chr3:30929407-30928957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 124

               
               
               Conread position:1-476
               
               
               Cow position:chr3:24591884-24592344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 81

               
               
               Conread position:1-481
               
               
               Cow position:chr3:66618914-66618471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:1-482
               
               
               Cow position:chr3:19802150-19801679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 98

               
               
               Conread position:1-483
               
               
               Cow position:chr3:39326417-39325956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 18

               
               
               Conread position:1-486
               
               
               Cow position:chr3:30314287-30313783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 128

               
               
               Conread position:1-486
               
               
               Cow position:chr3:36882184-36882659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:1-486
               
               
               Cow position:chr3:40823115-40822625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-487
               
               
               Cow position:chr3:2909367-2909832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 49

               
               
               Conread position:1-487
               
               
               Cow position:chr3:64028355-64028863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr3:17828919-17829424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr3:34396330-34396779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 35

               
               
               Conread position:1-489
               
               
               Cow position:chr3:37968812-37968308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr3:40340233-40340743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:1-490
               
               
               Cow position:chr3:6685188-6684708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 220

               
               
               Conread position:1-491
               
               
               Cow position:chr3:63005422-63005911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:1-492
               
               
               Cow position:chr3:52865022-52865506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 58

               
               
               Conread position:2-207
               
               
               Cow position:chr3:31898246-31898448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:2-273
               
               
               Cow position:chr3:17936338-17936610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 83

               
               
               Conread position:2-423
               
               
               Cow position:chr3:49545448-49545859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 10

               
               
               Conread position:2-445
               
               
               Cow position:chr3:31354529-31354935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-454
               
               
               Cow position:chr3:36691463-36691886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:2-468
               
               
               Cow position:chr3:2653835-2653398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:301
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):352, 10

               
               
               Conread position:2-468
               
               
               Cow position:chr3:9716537-9716097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 125

               
               
               Conread position:2-468
               
               
               Cow position:chr3:32842709-32843155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 34

               
               
               Conread position:2-473
               
               
               Cow position:chr3:5996144-5996603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-474
               
               
               Cow position:chr3:19692361-19692817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-474
               
               
               Cow position:chr3:21945677-21946138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:2-477
               
               
               Cow position:chr3:10239377-10238916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-477
               
               
               Cow position:chr3:38866129-38865671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-477
               
               
               Cow position:chr3:57484996-57485460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:2-486
               
               
               Cow position:chr3:21182957-21183427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr3:47273241-47273708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr3:72629796-72629327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:3-283
               
               
               Cow position:chr3:48231257-48231524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):154, 88

               
               
               Conread position:4-397
               
               
               Cow position:chr3:3980113-3979724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:4-492
               
               
               Cow position:chr3:32623284-32623788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:7-167
               
               
               Cow position:chr3:7168325-7168165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):158, 116

               
               
               Conread position:7-476
               
               
               Cow position:chr3:83295524-83295996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 66

               
               
               Conread position:7-477
               
               
               Cow position:chr3:14634378-14634823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 115

               
               
               Conread position:7-486
               
               
               Cow position:chr3:42431953-42431472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 122

               
               
               Conread position:8-160
               
               
               Cow position:chr3:50915025-50914879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:8-206
               
               
               Cow position:chr3:47179484-47179682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-210
               
               
               Cow position:chr3:19757240-19757442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-284
               
               
               Cow position:chr3:41212018-41212295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-301
               
               
               Cow position:chr3:57856456-57856162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-314
               
               
               Cow position:chr3:45032461-45032156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-317
               
               
               Cow position:chr3:4285605-4285298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):157, 107

               
               
               Conread position:8-317
               
               
               Cow position:chr3:66891242-66891544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:8-352
               
               
               Cow position:chr3:70083924-70084241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-454
               
               
               Cow position:chr3:64017644-64018076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-465
               
               
               Cow position:chr3:2711238-2711680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-465
               
               
               Cow position:chr3:5954467-5954893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 112

               
               
               Conread position:8-466
               
               
               Cow position:chr3:48061107-48061548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 86

               
               
               Conread position:8-469
               
               
               Cow position:chr3:5883260-5882811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-477
               
               
               Cow position:chr3:18542688-18543169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr3:18811222-18810754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 17

               
               
               Conread position:8-486
               
               
               Cow position:chr3:23291685-23292155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 119

               
               
               Conread position:8-486
               
               
               Cow position:chr3:43039972-43040436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr3:59861085-59860617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr3:69933117-69932651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 122

               
               
               Conread position:8-486
               
               
               Cow position:chr3:75041443-75041896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 70

               
               
               Conread position:8-486
               
               
               Cow position:chr3:78027691-78028162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-487
               
               
               Cow position:chr3:2917182-2916686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-487
               
               
               Cow position:chr3:15989316-15989807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 85

               
               
               Conread position:8-487
               
               
               Cow position:chr3:22335612-22335120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 102

               
               
               Conread position:8-487
               
               
               Cow position:chr3:72704917-72704417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-488
               
               
               Cow position:chr3:19938633-19938143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:330
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):150, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr3:24314198-24313696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr3:36117382-36116884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 111

               
               
               Conread position:8-489
               
               
               Cow position:chr3:46678193-46678695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr3:47081938-47082425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:332
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:8-489
               
               
               Cow position:chr3:49614257-49614754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:8-492
               
               
               Cow position:chr3:14440009-14440508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 39

               
               
               Conread position:8-492
               
               
               Cow position:chr3:46861578-46862083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 199

               
               
               Conread position:8-492
               
               
               Cow position:chr3:49677479-49676997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 62

               
               
               Conread position:8-492
               
               
               Cow position:chr3:64650351-64649839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:12-236
               
               
               Cow position:chr3:56321026-56320805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):150, 97

               
               
               Conread position:12-281
               
               
               Cow position:chr3:45775353-45775617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):103, 78

               
               
               Conread position:12-318
               
               
               Cow position:chr3:19878378-19878073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):153, 111

               
               
               Conread position:12-463
               
               
               Cow position:chr3:15178027-15177594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 33

               
               
               Conread position:12-466
               
               
               Cow position:chr3:34031181-34031622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 116

               
               
               Conread position:12-472
               
               
               Cow position:chr3:50209085-50208637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):7, 106

               
               
               Conread position:12-485
               
               
               Cow position:chr3:3054328-3053878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:12-489
               
               
               Cow position:chr3:3522730-3522233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 111

               
               
               Conread position:16-486
               
               
               Cow position:chr3:594301-593849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 113

               
               
               Conread position:25-284
               
               
               Cow position:chr3:49140705-49140961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 61

               
               
               Conread position:36-317
               
               
               Cow position:chr3:24359953-24359671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:45-479
               
               
               Cow position:chr3:34093716-34094129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:49-470
               
               
               Cow position:chr3:83234412-83234817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:53-465
               
               
               Cow position:chr3:46502710-46502300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:53-489
               
               
               Cow position:chr3:36099040-36099458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:64-423
               
               
               Cow position:chr3:66637710-66637376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:67-218
               
               
               Cow position:chr3:19943736-19943590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:77-411
               
               
               Cow position:chr3:18464099-18464430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 53

               
               
               Conread position:88-486
               
               
               Cow position:chr3:53515373-53514982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 42

               
               
               Conread position:101-487
               
               
               Cow position:chr3:17951295-17950918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:169-486
               
               
               Cow position:chr3:43193145-43193452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 44

               
               
               Conread position:207-466
               
               
               Cow position:chr3:19757726-19757973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:230-444
               
               
               Cow position:chr3:44255456-44255664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:230-472
               
               
               Cow position:chr3:57500013-57500257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 155

               
               
               Conread position:233-470
               
               
               Cow position:chr3:48329915-48329686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):166, 51

               
               
               Conread position:241-474
               
               
               Cow position:chr3:66119168-66118937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):184, 67

               
               
               Conread position:264-460
               
               
               Cow position:chr3:27905795-27905985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:295-489
               
               
               Cow position:chr3:47616508-47616701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:295-492
               
               
               Cow position:chr3:6781535-6781339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:302-460
               
               
               Cow position:chr3:44256734-44256889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:304-486
               
               
               Cow position:chr3:14888718-14888538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:304-489
               
               
               Cow position:chr3:2369757-2369941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:304-489
               
               
               Cow position:chr3:48841052-48840868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:304-489
               
               
               Cow position:chr3:66805237-66805051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):160, 111

               
               
               Conread position:304-492
               
               
               Cow position:chr3:56320288-56320104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:319-474
               
               
               Cow position:chr3:60210718-60210872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:1-371
               
               
               Cow position:chr4:39272409-39272756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:1-427
               
               
               Cow position:chr4:10408312-10407877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 181

               
               
               Conread position:1-444
               
               
               Cow position:chr4:66925535-66925116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-460
               
               
               Cow position:chr4:34185328-34185771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 47

               
               
               Conread position:1-466
               
               
               Cow position:chr4:46712810-46713254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 128

               
               
               Conread position:1-468
               
               
               Cow position:chr4:1371479-1371908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 82

               
               
               Conread position:1-486
               
               
               Cow position:chr4:16359422-16358962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):435, 64

               
               
               Conread position:1-489
               
               
               Cow position:chr4:602529-602019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-492
               
               
               Cow position:chr4:16056139-16055613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:344
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 219

               
               
               Conread position:1-492
               
               
               Cow position:chr4:28830571-28830099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:2-272
               
               
               Cow position:chr4:6449357-6449624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):160, 53

               
               
               Conread position:2-466
               
               
               Cow position:chr4:355443-354993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr4:3961124-3960651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 14

               
               
               Conread position:2-486
               
               
               Cow position:chr4:33073855-33074326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 7

               
               
               Conread position:2-492
               
               
               Cow position:chr4:46663734-46663250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 125

               
               
               Conread position:7-317
               
               
               Cow position:chr4:5879704-5879400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:7-440
               
               
               Cow position:chr4:58883149-58883563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:8-206
               
               
               Cow position:chr4:32211691-32211493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-226
               
               
               Cow position:chr4:17926730-17926947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-260
               
               
               Cow position:chr4:12241695-12241943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:8-316
               
               
               Cow position:chr4:1464396-1464697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):150, 99

               
               
               Conread position:8-317
               
               
               Cow position:chr4:65224010-65224320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-395
               
               
               Cow position:chr4:31668839-31668479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 20

               
               
               Conread position:8-453
               
               
               Cow position:chr4:44724607-44724183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-454
               
               
               Cow position:chr4:29532190-29532624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-454
               
               
               Cow position:chr4:33493336-33492901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:8-454
               
               
               Cow position:chr4:43880633-43880201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 79

               
               
               Conread position:8-466
               
               
               Cow position:chr4:4905678-4905233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:8-466
               
               
               Cow position:chr4:45049771-45050218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-477
               
               
               Cow position:chr4:1050096-1050556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-477
               
               
               Cow position:chr4:36895898-36895442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-479
               
               
               Cow position:chr4:24445675-24446131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:8-486
               
               
               Cow position:chr4:6490822-6491292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr4:13492100-13491627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr4:21338462-21338929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 47

               
               
               Conread position:8-486
               
               
               Cow position:chr4:41330964-41330495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr4:43320112-43320583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr4:48025926-48025458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-487
               
               
               Cow position:chr4:47764646-47765146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-488
               
               
               Cow position:chr4:3125305-3124805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-488
               
               
               Cow position:chr4:13547552-13547044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:342
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr4:101405-101900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 123

               
               
               Conread position:8-489
               
               
               Cow position:chr4:158040-157552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 79

               
               
               Conread position:8-489
               
               
               Cow position:chr4:528517-528017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-489
               
               
               Cow position:chr4:6269104-6269598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-489
               
               
               Cow position:chr4:9311761-9311259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-492
               
               
               Cow position:chr4:18516420-18515937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:9-224
               
               
               Cow position:chr4:11617968-11617747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 125

               
               
               Conread position:12-477
               
               
               Cow position:chr4:41118649-41118194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:12-489
               
               
               Cow position:chr4:23114656-23115153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 114

               
               
               Conread position:12-489
               
               
               Cow position:chr4:41954314-41953829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 107

               
               
               Conread position:15-489
               
               
               Cow position:chr4:1931103-1931571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 108

               
               
               Conread position:16-492
               
               
               Cow position:chr4:30307937-30308414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:330
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 79

               
               
               Conread position:18-429
               
               
               Cow position:chr4:3358239-3357844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 101

               
               
               Conread position:18-486
               
               
               Cow position:chr4:57978931-57978480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 111

               
               
               Conread position:25-225
               
               
               Cow position:chr4:3829999-3829804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:31-190
               
               
               Cow position:chr4:60265290-60265445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:37-456
               
               
               Cow position:chr4:8598636-8599033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:64-476
               
               
               Cow position:chr4:21359122-21358737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):320, 33

               
               
               Conread position:73-460
               
               
               Cow position:chr4:54955432-54955041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:79-486
               
               
               Cow position:chr4:25600146-25600547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 52

               
               
               Conread position:103-487
               
               
               Cow position:chr4:32211560-32211155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):67, 147

               
               
               Conread position:183-489
               
               
               Cow position:chr4:24652157-24652461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:241-422
               
               
               Cow position:chr4:4168785-4168607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:304-487
               
               
               Cow position:chr4:17927303-17927488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):151, 111

               
               
               Conread position:304-489
               
               
               Cow position:chr4:6566426-6566242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-193
               
               
               Cow position:chr5:29123170-29123362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):178, 113

               
               
               Conread position:1-209
               
               
               Cow position:chr5:41551299-41551503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):162, 106

               
               
               Conread position:1-210
               
               
               Cow position:chr5:32733619-32733826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):162, 122

               
               
               Conread position:1-217
               
               
               Cow position:chr5:9686788-9686996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):161, 94

               
               
               Conread position:1-217
               
               
               Cow position:chr5:45699906-45699692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):161, 123

               
               
               Conread position:1-317
               
               
               Cow position:chr5:59060251-59059927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):12, 211

               
               
               Conread position:1-373
               
               
               Cow position:chr5:6519516-6519160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 11

               
               
               Conread position:1-405
               
               
               Cow position:chr5:34202572-34202196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:1-426
               
               
               Cow position:chr5:54620093-54619699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:1-432
               
               
               Cow position:chr5:26090200-26090650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 251

               
               
               Conread position:1-450
               
               
               Cow position:chr5:76123925-76124357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):114, 126

               
               
               Conread position:1-453
               
               
               Cow position:chr5:26769436-26769008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 57

               
               
               Conread position:1-460
               
               
               Cow position:chr5:58747510-58747069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 22

               
               
               Conread position:1-466
               
               
               Cow position:chr5:27488645-27488202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 44

               
               
               Conread position:1-468
               
               
               Cow position:chr5:28031110-28030686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):166, 24

               
               
               Conread position:1-468
               
               
               Cow position:chr5:29008985-29008557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1-471
               
               
               Cow position:chr5:58056109-58056559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:306
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):111, 80

               
               
               Conread position:1-472
               
               
               Cow position:chr5:46659349-46658868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:1-477
               
               
               Cow position:chr5:14346748-14347206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 81

               
               
               Conread position:1-482
               
               
               Cow position:chr5:23716321-23716792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:1-486
               
               
               Cow position:chr5:30578948-30578476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 124

               
               
               Conread position:1-488
               
               
               Cow position:chr5:10443576-10444081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:342
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:1-488
               
               
               Cow position:chr5:27909641-27910151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr5:48468651-48469155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:1-489
               
               
               Cow position:chr5:52804960-52804508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr5:53714883-53714373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-490
               
               
               Cow position:chr5:49593833-49594326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 129

               
               
               Conread position:1-492
               
               
               Cow position:chr5:41529942-41530426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:2-210
               
               
               Cow position:chr5:29454239-29454445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:2-224
               
               
               Cow position:chr5:39165171-39165394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 127

               
               
               Conread position:2-287
               
               
               Cow position:chr5:58090195-58090487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:2-459
               
               
               Cow position:chr5:23755954-23756380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 89

               
               
               Conread position:2-464
               
               
               Cow position:chr5:3785435-3784990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-465
               
               
               Cow position:chr5:55627628-55627180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-468
               
               
               Cow position:chr5:24329923-24329488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:2-470
               
               
               Cow position:chr5:46630800-46631230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 114

               
               
               Conread position:2-474
               
               
               Cow position:chr5:48809089-48809544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr5:7273489-7273020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr5:32945507-32945030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:4-184
               
               
               Cow position:chr5:31101975-31102150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 8

               
               
               Conread position:6-317
               
               
               Cow position:chr5:46644331-46644023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:6-489
               
               
               Cow position:chr5:46775706-46775209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 101

               
               
               Conread position:7-317
               
               
               Cow position:chr5:45182481-45182783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 103

               
               
               Conread position:8-115
               
               
               Cow position:chr5:29042130-29042023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-154
               
               
               Cow position:chr5:54932599-54932744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:8-194
               
               
               Cow position:chr5:12185279-12185093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-225
               
               
               Cow position:chr5:18665580-18665364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:8-272
               
               
               Cow position:chr5:35299682-35299417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-317
               
               
               Cow position:chr5:24576532-24576223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):40, 118

               
               
               Conread position:8-317
               
               
               Cow position:chr5:26079600-26079909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-424
               
               
               Cow position:chr5:59481873-59481434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 59

               
               
               Conread position:8-454
               
               
               Cow position:chr5:416101-416535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 101

               
               
               Conread position:8-454
               
               
               Cow position:chr5:2430514-2430946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 44

               
               
               Conread position:8-454
               
               
               Cow position:chr5:4068609-4068179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 122

               
               
               Conread position:8-454
               
               
               Cow position:chr5:37731964-37731530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 125

               
               
               Conread position:8-457
               
               
               Cow position:chr5:27000816-27000386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:8-465
               
               
               Cow position:chr5:6158578-6159018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 88

               
               
               Conread position:8-465
               
               
               Cow position:chr5:64782398-64782839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr5:59282381-59281936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-468
               
               
               Cow position:chr5:49181900-49181478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 74

               
               
               Conread position:8-476
               
               
               Cow position:chr5:23227879-23227430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:8-477
               
               
               Cow position:chr5:10918416-10917966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr5:1342177-1342644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr5:2914069-2913601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr5:24098267-24097805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:8-486
               
               
               Cow position:chr5:34696202-34695735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:8-486
               
               
               Cow position:chr5:54792999-54793466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-487
               
               
               Cow position:chr5:14379781-14379287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 99

               
               
               Conread position:8-487
               
               
               Cow position:chr5:46738966-46739453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr5:2530889-2530393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 89

               
               
               Conread position:8-489
               
               
               Cow position:chr5:4019580-4020076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr5:10776634-10777127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr5:10844256-10844756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 122

               
               
               Conread position:8-489
               
               
               Cow position:chr5:18663866-18663363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr5:23960489-23960989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr5:31706193-31705695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 102

               
               
               Conread position:8-489
               
               
               Cow position:chr5:32772100-32771594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr5:37755520-37756022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr5:47831486-47831976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):157, 67

               
               
               Conread position:8-489
               
               
               Cow position:chr5:58195621-58195123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:8-489
               
               
               Cow position:chr5:59144400-59143897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-492
               
               
               Cow position:chr5:3504628-3505098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 108

               
               
               Conread position:8-492
               
               
               Cow position:chr5:32674117-32674590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 59

               
               
               Conread position:8-492
               
               
               Cow position:chr5:46663620-46663119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 116

               
               
               Conread position:8-492
               
               
               Cow position:chr5:57482928-57483398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 121

               
               
               Conread position:8-492
               
               
               Cow position:chr5:61273549-61274022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 102

               
               
               Conread position:12-456
               
               
               Cow position:chr5:34167683-34167251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):151, 95

               
               
               Conread position:12-456
               
               
               Cow position:chr5:56858082-56858519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:299
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):89, 58

               
               
               Conread position:12-482
               
               
               Cow position:chr5:12681894-12682346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 58

               
               
               Conread position:12-486
               
               
               Cow position:chr5:49119663-49120127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 118

               
               
               Conread position:13-465
               
               
               Cow position:chr5:25001309-25001737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):150, 63

               
               
               Conread position:15-486
               
               
               Cow position:chr5:4384841-4384379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 114

               
               
               Conread position:15-489
               
               
               Cow position:chr5:42504367-42503881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 111

               
               
               Conread position:16-317
               
               
               Cow position:chr5:3964081-3963788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 93

               
               
               Conread position:18-209
               
               
               Cow position:chr5:12644261-12644457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:18-492
               
               
               Cow position:chr5:41963323-41963783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 104

               
               
               Conread position:21-476
               
               
               Cow position:chr5:23687864-23688314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:49-492
               
               
               Cow position:chr5:28006797-28006378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 47

               
               
               Conread position:70-283
               
               
               Cow position:chr5:73489769-73489983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:86-492
               
               
               Cow position:chr5:46005889-46006280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:96-476
               
               
               Cow position:chr5:27060544-27060908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:124-474
               
               
               Cow position:chr5:52433342-52433011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):218, 24

               
               
               Conread position:129-492
               
               
               Cow position:chr5:29457121-29456774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:165-474
               
               
               Cow position:chr5:29123566-29123866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:183-489
               
               
               Cow position:chr5:308156-308462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:183-489
               
               
               Cow position:chr5:13383857-13384162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:188-477
               
               
               Cow position:chr5:12184682-12184404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:188-489
               
               
               Cow position:chr5:54936091-54936393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:196-486
               
               
               Cow position:chr5:49123396-49123677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:230-489
               
               
               Cow position:chr5:27652544-27652802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):226, 167

               
               
               Conread position:230-492
               
               
               Cow position:chr5:13607363-13607612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:231-478
               
               
               Cow position:chr5:14500751-14500987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:261-492
               
               
               Cow position:chr5:45699407-45699180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:319-488
               
               
               Cow position:chr5:45182819-45182987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr6:59919511-59919715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:1-222
               
               
               Cow position:chr6:1384078-1384294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 8

               
               
               Conread position:1-252
               
               
               Cow position:chr6:68362548-68362795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):161, 44

               
               
               Conread position:1-270
               
               
               Cow position:chr6:6566380-6566110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 128

               
               
               Conread position:1-282
               
               
               Cow position:chr6:52804183-52803907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 89

               
               
               Conread position:1-291
               
               
               Cow position:chr6:13943683-13943388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:1-423
               
               
               Cow position:chr6:28274755-28274350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 36

               
               
               Conread position:1-473
               
               
               Cow position:chr6:10054382-10053949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):99, 116

               
               
               Conread position:1-481
               
               
               Cow position:chr6:25357440-25356973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):114, 94

               
               
               Conread position:1-486
               
               
               Cow position:chr6:65841362-65840877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr6:17598508-17599018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 211

               
               
               Conread position:1-489
               
               
               Cow position:chr6:26671092-26671606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:1-489
               
               
               Cow position:chr6:44028819-44028316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr6:57870236-57870745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 122

               
               
               Conread position:1-492
               
               
               Cow position:chr6:11277929-11278404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):383, 11

               
               
               Conread position:1-492
               
               
               Cow position:chr6:38232043-38231555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:2-211
               
               
               Cow position:chr6:42927153-42926938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:2-217
               
               
               Cow position:chr6:65007610-65007398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:2-226
               
               
               Cow position:chr6:65927705-65927489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-456
               
               
               Cow position:chr6:2402017-2401592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:2-460
               
               
               Cow position:chr6:7179904-7180338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:2-465
               
               
               Cow position:chr6:3889722-3890170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 77

               
               
               Conread position:2-466
               
               
               Cow position:chr6:21686661-21686216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 10

               
               
               Conread position:2-469
               
               
               Cow position:chr6:27469024-27468583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr6:913397-912923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr6:15141407-15141873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:2-486
               
               
               Cow position:chr6:27530233-27530704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 14

               
               
               Conread position:2-487
               
               
               Cow position:chr6:1823481-1823949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:6-455
               
               
               Cow position:chr6:33459348-33458898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):156, 22

               
               
               Conread position:7-238
               
               
               Cow position:chr6:42723161-42723387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:7-260
               
               
               Cow position:chr6:17045825-17045571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):154, 5

               
               
               Conread position:7-260
               
               
               Cow position:chr6:29311256-29311002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 23

               
               
               Conread position:7-458
               
               
               Cow position:chr6:65900148-65900592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 120

               
               
               Conread position:7-479
               
               
               Cow position:chr6:39437404-39436940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 5

               
               
               Conread position:7-484
               
               
               Cow position:chr6:36525804-36525340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 122

               
               
               Conread position:7-486
               
               
               Cow position:chr6:43794947-43795430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:320
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):157, 123

               
               
               Conread position:7-492
               
               
               Cow position:chr6:66231575-66231108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:8-209
               
               
               Cow position:chr6:8761540-8761741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-210
               
               
               Cow position:chr6:58409149-58409349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:8-217
               
               
               Cow position:chr6:33388598-33388372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 217

               
               
               Conread position:8-226
               
               
               Cow position:chr6:701714-701496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 121

               
               
               Conread position:8-317
               
               
               Cow position:chr6:13103819-13103510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 115

               
               
               Conread position:8-317
               
               
               Cow position:chr6:34127112-34126802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-456
               
               
               Cow position:chr6:30478858-30478410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:8-466
               
               
               Cow position:chr6:5951476-5951919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 106

               
               
               Conread position:8-466
               
               
               Cow position:chr6:15280782-15281227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr6:20561349-20561785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 22

               
               
               Conread position:8-466
               
               
               Cow position:chr6:34893249-34893692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 122

               
               
               Conread position:8-466
               
               
               Cow position:chr6:64713309-64712870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr6:64714876-64714437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 121

               
               
               Conread position:8-468
               
               
               Cow position:chr6:19453689-19453255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:8-469
               
               
               Cow position:chr6:35876956-35877404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 121

               
               
               Conread position:8-477
               
               
               Cow position:chr6:55544566-55545023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-485
               
               
               Cow position:chr6:43617477-43616977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 199

               
               
               Conread position:8-486
               
               
               Cow position:chr6:51756-52221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr6:331705-332216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 211

               
               
               Conread position:8-486
               
               
               Cow position:chr6:8201493-8201023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr6:21971434-21970968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr6:24238808-24238342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr6:40275019-40274521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-486
               
               
               Cow position:chr6:47043671-47044142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr6:50497698-50498157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 37

               
               
               Conread position:8-487
               
               
               Cow position:chr6:1405476-1405966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-487
               
               
               Cow position:chr6:30275422-30275881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):449, 121

               
               
               Conread position:8-487
               
               
               Cow position:chr6:65822366-65822835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:8-489
               
               
               Cow position:chr6:2374467-2373970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:337
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):157, 85

               
               
               Conread position:8-489
               
               
               Cow position:chr6:2554468-2553970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 122

               
               
               Conread position:8-489
               
               
               Cow position:chr6:6935364-6935866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr6:7141711-7142200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 96

               
               
               Conread position:8-489
               
               
               Cow position:chr6:13978283-13977803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:316
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):171, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr6:28491753-28492244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr6:39907910-39907416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-489
               
               
               Cow position:chr6:41757225-41757724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr6:45672025-45671529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:8-489
               
               
               Cow position:chr6:68026543-68026042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:8-491
               
               
               Cow position:chr6:27169337-27168833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-491
               
               
               Cow position:chr6:40314663-40314173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 106

               
               
               Conread position:8-492
               
               
               Cow position:chr6:3278190-3278663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-492
               
               
               Cow position:chr6:3488640-3489106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 62

               
               
               Conread position:8-492
               
               
               Cow position:chr6:6476694-6477159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 66

               
               
               Conread position:8-492
               
               
               Cow position:chr6:12093096-12093566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 74

               
               
               Conread position:8-492
               
               
               Cow position:chr6:28063102-28062608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-492
               
               
               Cow position:chr6:65909187-65908689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 82

               
               
               Conread position:12-489
               
               
               Cow position:chr6:44150801-44151283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 88

               
               
               Conread position:12-492
               
               
               Cow position:chr6:13846791-13846326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:15-486
               
               
               Cow position:chr6:65880620-65880152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 21

               
               
               Conread position:17-260
               
               
               Cow position:chr6:28106016-28106253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):147, 8

               
               
               Conread position:21-385
               
               
               Cow position:chr6:52736149-52735790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 98

               
               
               Conread position:25-239
               
               
               Cow position:chr6:35420826-35421029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):137, 70

               
               
               Conread position:27-490
               
               
               Cow position:chr6:21836358-21836853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:59-486
               
               
               Cow position:chr6:2111247-2111655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 70

               
               
               Conread position:64-210
               
               
               Cow position:chr6:13276265-13276118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:64-424
               
               
               Cow position:chr6:13317982-13318328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:77-305
               
               
               Cow position:chr6:10640482-10640264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 42

               
               
               Conread position:86-492
               
               
               Cow position:chr6:40554932-40555326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:101-489
               
               
               Cow position:chr6:734835-734435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:103-489
               
               
               Cow position:chr6:62489043-62489425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:122-469
               
               
               Cow position:chr6:476742-476408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:129-432
               
               
               Cow position:chr6:37477882-37477582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:129-476
               
               
               Cow position:chr6:66538967-66538637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:169-470
               
               
               Cow position:chr6:4904451-4904739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:174-486
               
               
               Cow position:chr6:62829304-62829607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:183-489
               
               
               Cow position:chr6:8444092-8444397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:183-489
               
               
               Cow position:chr6:33794758-33795064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:192-489
               
               
               Cow position:chr6:13943455-13943158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:207-489
               
               
               Cow position:chr6:58409471-58409754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:208-486
               
               
               Cow position:chr6:8761892-8762158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):261, 24

               
               
               Conread position:210-483
               
               
               Cow position:chr6:47958640-47958382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:295-492
               
               
               Cow position:chr6:65927164-65926971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:304-486
               
               
               Cow position:chr6:17045438-17045252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):124, 111

               
               
               Conread position:304-488
               
               
               Cow position:chr6:13276064-13275880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 170

               
               
               Conread position:335-466
               
               
               Cow position:chr6:28169534-28169404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr7:994092-993912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):99, 127

               
               
               Conread position:1-186
               
               
               Cow position:chr7:23816109-23816293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:1-217
               
               
               Cow position:chr7:35297737-35297952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-241
               
               
               Cow position:chr7:62679796-62680039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:1-260
               
               
               Cow position:chr7:68858235-68858485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):157, 126

               
               
               Conread position:1-270
               
               
               Cow position:chr7:20306933-20307194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):255, 115

               
               
               Conread position:1-362
               
               
               Cow position:chr7:39108861-39109210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 18

               
               
               Conread position:1-422
               
               
               Cow position:chr7:1357808-1358217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 187

               
               
               Conread position:1-443
               
               
               Cow position:chr7:63020710-63020280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 109

               
               
               Conread position:1-451
               
               
               Cow position:chr7:37416879-37416460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):158, 11

               
               
               Conread position:1-460
               
               
               Cow position:chr7:60857507-60857942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 17

               
               
               Conread position:1-464
               
               
               Cow position:chr7:53015351-53014900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:1-466
               
               
               Cow position:chr7:21127794-21128240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 15

               
               
               Conread position:1-474
               
               
               Cow position:chr7:26883985-26883539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:316
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):163, 92

               
               
               Conread position:1-489
               
               
               Cow position:chr7:52120222-52120692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:329
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:1-489
               
               
               Cow position:chr7:67416902-67416454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:1-492
               
               
               Cow position:chr7:21310064-21309579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 17

               
               
               Conread position:1-492
               
               
               Cow position:chr7:51013826-51013349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:1-492
               
               
               Cow position:chr7:53990599-53990141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 57

               
               
               Conread position:1-492
               
               
               Cow position:chr7:63385211-63384699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:2-199
               
               
               Cow position:chr7:45949289-45949488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:2-215
               
               
               Cow position:chr7:19924956-19925168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):125, 10

               
               
               Conread position:2-217
               
               
               Cow position:chr7:41870073-41870284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:2-223
               
               
               Cow position:chr7:68076392-68076178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 43

               
               
               Conread position:2-474
               
               
               Cow position:chr7:49290453-49289979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:2-486
               
               
               Cow position:chr7:1372794-1373269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr7:13537872-13538349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 7

               
               
               Conread position:2-486
               
               
               Cow position:chr7:34148966-34148492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 127

               
               
               Conread position:2-486
               
               
               Cow position:chr7:64242084-64242554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 10

               
               
               Conread position:3-207
               
               
               Cow position:chr7:21975880-21976084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):160, 124

               
               
               Conread position:3-275
               
               
               Cow position:chr7:59027873-59027610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 122

               
               
               Conread position:3-472
               
               
               Cow position:chr7:20429157-20429614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:310
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):160, 15

               
               
               Conread position:4-475
               
               
               Cow position:chr7:55280943-55281395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):5, 92

               
               
               Conread position:4-492
               
               
               Cow position:chr7:54602705-54602224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 126

               
               
               Conread position:6-210
               
               
               Cow position:chr7:36085187-36084982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):77, 123

               
               
               Conread position:6-477
               
               
               Cow position:chr7:446780-447225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:6-489
               
               
               Cow position:chr7:26025888-26025414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:323
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):152, 93

               
               
               Conread position:7-466
               
               
               Cow position:chr7:27786483-27786038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 122

               
               
               Conread position:7-492
               
               
               Cow position:chr7:20799580-20800065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:336
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):158, 86

               
               
               Conread position:8-215
               
               
               Cow position:chr7:11446406-11446200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):150, 117

               
               
               Conread position:8-260
               
               
               Cow position:chr7:35287707-35287965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):150, 119

               
               
               Conread position:8-263
               
               
               Cow position:chr7:521994-522242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:8-317
               
               
               Cow position:chr7:47374847-47374537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-351
               
               
               Cow position:chr7:20294722-20294395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 122

               
               
               Conread position:8-418
               
               
               Cow position:chr7:46902226-46902619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-424
               
               
               Cow position:chr7:8145387-8145791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-452
               
               
               Cow position:chr7:34485760-34485330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chr7:24808617-24809063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 122

               
               
               Conread position:8-486
               
               
               Cow position:chr7:14139746-14140212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr7:21235161-21235627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 104

               
               
               Conread position:8-486
               
               
               Cow position:chr7:21985249-21984780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 51

               
               
               Conread position:8-486
               
               
               Cow position:chr7:38397078-38396605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 122

               
               
               Conread position:8-486
               
               
               Cow position:chr7:67798702-67798237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:8-487
               
               
               Cow position:chr7:17022-17520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-487
               
               
               Cow position:chr7:3301304-3301804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-487
               
               
               Cow position:chr7:55538067-55538543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:8-489
               
               
               Cow position:chr7:3234833-3235332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr7:6643022-6643524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr7:6648804-6649305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-489
               
               
               Cow position:chr7:11466884-11467377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 99

               
               
               Conread position:8-489
               
               
               Cow position:chr7:27102260-27102762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-492
               
               
               Cow position:chr7:48633256-48632782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):433, 120

               
               
               Conread position:9-253
               
               
               Cow position:chr7:26890655-26890415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):154, 44

               
               
               Conread position:9-473
               
               
               Cow position:chr7:39791587-39791135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:12-198
               
               
               Cow position:chr7:51911504-51911691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:12-211
               
               
               Cow position:chr7:38536370-38536168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):100, 189

               
               
               Conread position:12-396
               
               
               Cow position:chr7:1736331-1736700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 131

               
               
               Conread position:12-458
               
               
               Cow position:chr7:25439376-25438920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 98

               
               
               Conread position:12-461
               
               
               Cow position:chr7:1449340-1448901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 11

               
               
               Conread position:12-488
               
               
               Cow position:chr7:61559059-61558563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 114

               
               
               Conread position:12-492
               
               
               Cow position:chr7:29370917-29371375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 85

               
               
               Conread position:13-226
               
               
               Cow position:chr7:68907462-68907244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:13-380
               
               
               Cow position:chr7:41876635-41876989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:13-382
               
               
               Cow position:chr7:29469712-29469349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:15-474
               
               
               Cow position:chr7:20106707-20107143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):346, 75

               
               
               Conread position:15-489
               
               
               Cow position:chr7:6720391-6719896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 108

               
               
               Conread position:16-422
               
               
               Cow position:chr7:54515272-54515675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):146, 46

               
               
               Conread position:19-492
               
               
               Cow position:chr7:3154621-3154157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 111

               
               
               Conread position:29-479
               
               
               Cow position:chr7:47050250-47049823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 67

               
               
               Conread position:32-492
               
               
               Cow position:chr7:21242281-21242725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:38-260
               
               
               Cow position:chr7:1400534-1400751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):124, 91

               
               
               Conread position:47-492
               
               
               Cow position:chr7:30156477-30156918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 75

               
               
               Conread position:50-489
               
               
               Cow position:chr7:27144144-27143718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:58-423
               
               
               Cow position:chr7:41489935-41489592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:67-487
               
               
               Cow position:chr7:20528905-20529345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:67-489
               
               
               Cow position:chr7:20555487-20555045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:97-492
               
               
               Cow position:chr7:68779094-68779480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:102-488
               
               
               Cow position:chr7:67426142-67425764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:126-486
               
               
               Cow position:chr7:33406476-33406819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:132-474
               
               
               Cow position:chr7:67653673-67653345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:140-485
               
               
               Cow position:chr7:10431666-10432008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:140-489
               
               
               Cow position:chr7:7256011-7255640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 295

               
               
               Conread position:142-472
               
               
               Cow position:chr7:3729783-3729469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:162-492
               
               
               Cow position:chr7:24421666-24421342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:168-486
               
               
               Cow position:chr7:759844-760153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:184-466
               
               
               Cow position:chr7:19926903-19927173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:239-423
               
               
               Cow position:chr7:68436386-68436569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:249-486
               
               
               Cow position:chr7:521732-521498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:251-489
               
               
               Cow position:chr7:20303042-20302804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:264-470
               
               
               Cow position:chr7:49445902-49445705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:266-481
               
               
               Cow position:chr7:35288021-35288232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:267-477
               
               
               Cow position:chr7:993873-993664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 25

               
               
               Conread position:275-492
               
               
               Cow position:chr7:68858735-68858949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:276-492
               
               
               Cow position:chr7:26890344-26890128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:280-460
               
               
               Cow position:chr7:21251630-21251809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:304-468
               
               
               Cow position:chr7:21976350-21976516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:304-486
               
               
               Cow position:chr7:51912009-51912193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):162, 89

               
               
               Conread position:305-487
               
               
               Cow position:chr7:5661872-5661697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:319-492
               
               
               Cow position:chr7:27536848-27537024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):156, 93

               
               
               Conread position:1-361
               
               
               Cow position:chr8:46945078-46945440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:1-395
               
               
               Cow position:chr8:61198071-61198453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 11

               
               
               Conread position:1-423
               
               
               Cow position:chr8:45189138-45188720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 164

               
               
               Conread position:1-432
               
               
               Cow position:chr8:27925170-27924764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 185

               
               
               Conread position:1-441
               
               
               Cow position:chr8:8595849-8596276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 126

               
               
               Conread position:1-444
               
               
               Cow position:chr8:47670499-47670093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 32

               
               
               Conread position:1-470
               
               
               Cow position:chr8:38607458-38607936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:1-471
               
               
               Cow position:chr8:27983753-27984225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 130

               
               
               Conread position:1-472
               
               
               Cow position:chr8:44693340-44692895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:322
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):161, 106

               
               
               Conread position:1-474
               
               
               Cow position:chr8:13735698-13735236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 126

               
               
               Conread position:1-476
               
               
               Cow position:chr8:42658415-42658872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:317
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:1-476
               
               
               Cow position:chr8:53427373-53426912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 93

               
               
               Conread position:1-481
               
               
               Cow position:chr8:32930555-32930106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:1-486
               
               
               Cow position:chr8:45448497-45448026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):373, 126

               
               
               Conread position:1-487
               
               
               Cow position:chr8:37657221-37657722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:1-488
               
               
               Cow position:chr8:9275068-9274558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:1-491
               
               
               Cow position:chr8:33429961-33429492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-492
               
               
               Cow position:chr8:8518535-8519035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 108

               
               
               Conread position:1-492
               
               
               Cow position:chr8:10748425-10747919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 92

               
               
               Conread position:1-492
               
               
               Cow position:chr8:11970516-11970995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:1-492
               
               
               Cow position:chr8:47885071-47884577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 89

               
               
               Conread position:2-167
               
               
               Cow position:chr8:46091816-46091980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):115, 10

               
               
               Conread position:2-197
               
               
               Cow position:chr8:39196170-39196367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:2-266
               
               
               Cow position:chr8:39160361-39160096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:2-429
               
               
               Cow position:chr8:8910269-8909865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:2-466
               
               
               Cow position:chr8:8402156-8402606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-480
               
               
               Cow position:chr8:8316590-8317048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:2-492
               
               
               Cow position:chr8:44076974-44077453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:6-486
               
               
               Cow position:chr8:10743586-10744036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 58

               
               
               Conread position:6-486
               
               
               Cow position:chr8:19050527-19050050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 123

               
               
               Conread position:7-135
               
               
               Cow position:chr8:14592148-14592275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:7-206
               
               
               Cow position:chr8:23216788-23216595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):155, 28

               
               
               Conread position:7-428
               
               
               Cow position:chr8:9264239-9264637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):216, 123

               
               
               Conread position:7-466
               
               
               Cow position:chr8:8229745-8230209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 122

               
               
               Conread position:8-210
               
               
               Cow position:chr8:45317085-45317286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):155, 82

               
               
               Conread position:8-254
               
               
               Cow position:chr8:37931334-37931088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-266
               
               
               Cow position:chr8:32631985-32632234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-315
               
               
               Cow position:chr8:6065685-6065986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-317
               
               
               Cow position:chr8:22572257-22572566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:8-391
               
               
               Cow position:chr8:36636504-36636876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-463
               
               
               Cow position:chr8:38390405-38389967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 83

               
               
               Conread position:8-463
               
               
               Cow position:chr8:50993826-50993394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 86

               
               
               Conread position:8-466
               
               
               Cow position:chr8:2171341-2171805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 122

               
               
               Conread position:8-468
               
               
               Cow position:chr8:25542633-25542201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 102

               
               
               Conread position:8-469
               
               
               Cow position:chr8:4686433-4685985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:8-469
               
               
               Cow position:chr8:50289113-50289581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 103

               
               
               Conread position:8-473
               
               
               Cow position:chr8:23770677-23770225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 107

               
               
               Conread position:8-473
               
               
               Cow position:chr8:46458696-46459148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):162, 72

               
               
               Conread position:8-474
               
               
               Cow position:chr8:12663978-12664438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:311
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):111, 208

               
               
               Conread position:8-477
               
               
               Cow position:chr8:17311056-17310623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:8-477
               
               
               Cow position:chr8:24916299-24916747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 108

               
               
               Conread position:8-478
               
               
               Cow position:chr8:25407486-25407040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 111

               
               
               Conread position:8-486
               
               
               Cow position:chr8:3856976-3857444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:8-486
               
               
               Cow position:chr8:11801273-11800806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 122

               
               
               Conread position:8-486
               
               
               Cow position:chr8:12505035-12504542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:333
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):150, 86

               
               
               Conread position:8-486
               
               
               Cow position:chr8:29440789-29441255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr8:33588416-33587949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr8:36637619-36638089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr8:44244537-44245002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr8:49214467-49214001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 117

               
               
               Conread position:8-486
               
               
               Cow position:chr8:60060242-60059772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-487
               
               
               Cow position:chr8:27578445-27577948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:8-489
               
               
               Cow position:chr8:1154270-1154734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr8:1319087-1318577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 206

               
               
               Conread position:8-489
               
               
               Cow position:chr8:8557098-8557593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:329
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-489
               
               
               Cow position:chr8:8656178-8656679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 78

               
               
               Conread position:8-489
               
               
               Cow position:chr8:9735286-9734787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr8:32439404-32439905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 39

               
               
               Conread position:8-489
               
               
               Cow position:chr8:47069769-47070271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 117

               
               
               Conread position:8-491
               
               
               Cow position:chr8:47074307-47073806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:8-492
               
               
               Cow position:chr8:2885782-2885287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:338
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):157, 83

               
               
               Conread position:8-492
               
               
               Cow position:chr8:26006729-26007229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:12-283
               
               
               Cow position:chr8:19173736-19174003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):147, 57

               
               
               Conread position:12-477
               
               
               Cow position:chr8:25522432-25521981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-478
               
               
               Cow position:chr8:45161325-45161783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 118

               
               
               Conread position:12-486
               
               
               Cow position:chr8:8904480-8904924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):433, 73

               
               
               Conread position:12-486
               
               
               Cow position:chr8:19328989-19328522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-486
               
               
               Cow position:chr8:45795710-45796175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 83

               
               
               Conread position:12-486
               
               
               Cow position:chr8:59262860-59263324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 103

               
               
               Conread position:15-492
               
               
               Cow position:chr8:9540459-9540928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 70

               
               
               Conread position:16-226
               
               
               Cow position:chr8:11821346-11821135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):78, 115

               
               
               Conread position:16-473
               
               
               Cow position:chr8:47662296-47662737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 113

               
               
               Conread position:17-473
               
               
               Cow position:chr8:32319518-32319962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 112

               
               
               Conread position:19-492
               
               
               Cow position:chr8:25776848-25777308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 103

               
               
               Conread position:32-490
               
               
               Cow position:chr8:11757729-11757276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:48-492
               
               
               Cow position:chr8:42161659-42162086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 49

               
               
               Conread position:49-226
               
               
               Cow position:chr8:11831737-11831568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:50-481
               
               
               Cow position:chr8:42467387-42466976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:64-486
               
               
               Cow position:chr8:3784562-3784150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:68-486
               
               
               Cow position:chr8:11761342-11760936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 58

               
               
               Conread position:76-445
               
               
               Cow position:chr8:24420818-24421168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:76-486
               
               
               Cow position:chr8:38088095-38087693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:85-492
               
               
               Cow position:chr8:51860028-51860404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:87-484
               
               
               Cow position:chr8:44121821-44121428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:99-487
               
               
               Cow position:chr8:29582002-29581592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:104-486
               
               
               Cow position:chr8:30490759-30491135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:122-486
               
               
               Cow position:chr8:14929104-14929461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:130-465
               
               
               Cow position:chr8:14592496-14592816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:153-475
               
               
               Cow position:chr8:19229703-19229384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 60

               
               
               Conread position:188-456
               
               
               Cow position:chr8:23766489-23766743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:189-476
               
               
               Cow position:chr8:11590498-11590227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:206-489
               
               
               Cow position:chr8:22572500-22572783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:207-477
               
               
               Cow position:chr8:39196571-39196828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:210-492
               
               
               Cow position:chr8:61036057-61036325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:216-492
               
               
               Cow position:chr8:32634858-32635132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:304-489
               
               
               Cow position:chr8:37930643-37930459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:324-492
               
               
               Cow position:chr8:1581481-1581317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):6, 49

               
               
               Conread position:1-211
               
               
               Cow position:chr9:34107021-34107232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr9:28626333-28626546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):156, 88

               
               
               Conread position:1-219
               
               
               Cow position:chr9:7062410-7062626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):158, 11

               
               
               Conread position:1-269
               
               
               Cow position:chr9:59510302-59510028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:1-275
               
               
               Cow position:chr9:2052147-2051882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):162, 94

               
               
               Conread position:1-385
               
               
               Cow position:chr9:3867807-3868173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):161, 84

               
               
               Conread position:1-402
               
               
               Cow position:chr9:3585999-3585631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):156, 90

               
               
               Conread position:1-441
               
               
               Cow position:chr9:15072213-15071801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:1-453
               
               
               Cow position:chr9:54360304-54359863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 129

               
               
               Conread position:1-486
               
               
               Cow position:chr9:10321519-10321047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-486
               
               
               Cow position:chr9:29629050-29629529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-486
               
               
               Cow position:chr9:47001903-47001433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):464, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr9:25755505-25756016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr9:31020505-31020030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr9:45873050-45872543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:1-492
               
               
               Cow position:chr9:222848-223337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:327
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:1-492
               
               
               Cow position:chr9:2488274-2488774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:2-201
               
               
               Cow position:chr9:22650850-22650652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-211
               
               
               Cow position:chr9:37129839-37130054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:2-221
               
               
               Cow position:chr9:792815-793026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:2-389
               
               
               Cow position:chr9:2630213-2629839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 123

               
               
               Conread position:2-454
               
               
               Cow position:chr9:51183013-51183452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:2-456
               
               
               Cow position:chr9:20310035-20310462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):160, 93

               
               
               Conread position:2-477
               
               
               Cow position:chr9:55617041-55616590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):164, 14

               
               
               Conread position:2-486
               
               
               Cow position:chr9:3548475-3548950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 10

               
               
               Conread position:2-486
               
               
               Cow position:chr9:31807235-31806758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr9:42568568-42568087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-492
               
               
               Cow position:chr9:59482974-59483451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 14

               
               
               Conread position:3-226
               
               
               Cow position:chr9:829863-830079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:3-237
               
               
               Cow position:chr9:1294120-1294357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:3-489
               
               
               Cow position:chr9:831737-832222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 97

               
               
               Conread position:4-216
               
               
               Cow position:chr9:26712624-26712835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):159, 8

               
               
               Conread position:4-486
               
               
               Cow position:chr9:6830850-6831317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:4-486
               
               
               Cow position:chr9:28021240-28020768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 61

               
               
               Conread position:6-199
               
               
               Cow position:chr9:1979638-1979446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):156, 120

               
               
               Conread position:6-260
               
               
               Cow position:chr9:4532183-4531931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):215, 121

               
               
               Conread position:6-492
               
               
               Cow position:chr9:59443547-59443046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 74

               
               
               Conread position:7-194
               
               
               Cow position:chr9:32968433-32968244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):99, 108

               
               
               Conread position:7-317
               
               
               Cow position:chr9:50789257-50788950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 99

               
               
               Conread position:7-486
               
               
               Cow position:chr9:2199800-2199335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 5

               
               
               Conread position:8-193
               
               
               Cow position:chr9:29028539-29028724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-204
               
               
               Cow position:chr9:60651774-60651968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:8-225
               
               
               Cow position:chr9:28677664-28677449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-225
               
               
               Cow position:chr9:36724191-36723977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:8-232
               
               
               Cow position:chr9:18836473-18836253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 99

               
               
               Conread position:8-260
               
               
               Cow position:chr9:60278332-60278586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 117

               
               
               Conread position:8-317
               
               
               Cow position:chr9:163800-164110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-325
               
               
               Cow position:chr9:2500605-2500927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 119

               
               
               Conread position:8-410
               
               
               Cow position:chr9:2185653-2185225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:8-454
               
               
               Cow position:chr9:30672060-30671627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-456
               
               
               Cow position:chr9:37163118-37163551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-463
               
               
               Cow position:chr9:27034398-27033956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 106

               
               
               Conread position:8-465
               
               
               Cow position:chr9:1996230-1996663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 111

               
               
               Conread position:8-477
               
               
               Cow position:chr9:7002244-7001788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-485
               
               
               Cow position:chr9:42309373-42308903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr9:417841-418308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr9:9012800-9012331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:8-486
               
               
               Cow position:chr9:16175457-16174990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 15

               
               
               Conread position:8-486
               
               
               Cow position:chr9:18510034-18510501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr9:37971517-37971988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chr9:59174467-59174937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:8-487
               
               
               Cow position:chr9:781112-781609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:8-487
               
               
               Cow position:chr9:1076509-1077007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:8-487
               
               
               Cow position:chr9:12401934-12401444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:8-487
               
               
               Cow position:chr9:31194477-31194976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr9:1252277-1252757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr9:16268050-16267549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr9:27933784-27933282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr9:33834583-33835083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chr9:34242908-34243410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-492
               
               
               Cow position:chr9:3006585-3007096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:346
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):157, 107

               
               
               Conread position:8-492
               
               
               Cow position:chr9:4672297-4671795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-492
               
               
               Cow position:chr9:59455909-59456384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-492
               
               
               Cow position:chr9:59535788-59535316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 27

               
               
               Conread position:9-298
               
               
               Cow position:chr9:3567164-3567451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):148, 120

               
               
               Conread position:12-366
               
               
               Cow position:chr9:25483559-25483203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 115

               
               
               Conread position:12-477
               
               
               Cow position:chr9:35657652-35657225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:303
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):218, 77

               
               
               Conread position:12-489
               
               
               Cow position:chr9:46626113-46626609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 111

               
               
               Conread position:15-465
               
               
               Cow position:chr9:2170740-2170304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 50

               
               
               Conread position:15-492
               
               
               Cow position:chr9:17064715-17065201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 30

               
               
               Conread position:16-456
               
               
               Cow position:chr9:52290328-52289884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:16-486
               
               
               Cow position:chr9:5003695-5003235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 109

               
               
               Conread position:37-211
               
               
               Cow position:chr9:10315042-10314868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:37-492
               
               
               Cow position:chr9:6051379-6051824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 93

               
               
               Conread position:49-478
               
               
               Cow position:chr9:10855849-10855430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 80

               
               
               Conread position:64-468
               
               
               Cow position:chr9:34991283-34990911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):173, 66

               
               
               Conread position:74-468
               
               
               Cow position:chr9:8969419-8969792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):91, 56

               
               
               Conread position:86-476
               
               
               Cow position:chr9:14961816-14962194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:147-489
               
               
               Cow position:chr9:51201747-51201390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 165

               
               
               Conread position:183-489
               
               
               Cow position:chr9:164180-164487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:185-491
               
               
               Cow position:chr9:22650437-22650140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:194-474
               
               
               Cow position:chr9:34107348-34107619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:232-489
               
               
               Cow position:chr9:13219840-13219588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:236-418
               
               
               Cow position:chr9:10314873-10314695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:241-486
               
               
               Cow position:chr9:6249605-6249371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):224, 47

               
               
               Conread position:244-472
               
               
               Cow position:chr9:3802976-3802754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:251-489
               
               
               Cow position:chr9:28677115-28676877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 46

               
               
               Conread position:295-489
               
               
               Cow position:chr9:51210748-51210555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:304-455
               
               
               Cow position:chr9:3567616-3567766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:304-469
               
               
               Cow position:chr9:10936967-10936803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:304-486
               
               
               Cow position:chr9:4531600-4531416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):167, 111

               
               
               Conread position:304-486
               
               
               Cow position:chr9:60279159-60279345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:1-166
               
               
               Cow position:chrX:31198204-31198041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:1-183
               
               
               Cow position:chrX:6909732-6909911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-210
               
               
               Cow position:chrX:21632981-21633188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):163, 48

               
               
               Conread position:1-217
               
               
               Cow position:chrX:20803740-20803527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):98, 57

               
               
               Conread position:1-217
               
               
               Cow position:chrX:24275274-24275059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):162, 126

               
               
               Conread position:1-224
               
               
               Cow position:chrX:39717403-39717179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):126, 98

               
               
               Conread position:1-253
               
               
               Cow position:chrX:30142787-30143034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):157, 84

               
               
               Conread position:1-255
               
               
               Cow position:chrX:4795520-4795275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):162, 109

               
               
               Conread position:1-291
               
               
               Cow position:chrX:30174056-30174341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:1-311
               
               
               Cow position:chrX:28634809-28635119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:1-317
               
               
               Cow position:chrX:11465395-11465712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:1-372
               
               
               Cow position:chrX:5834562-5834908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 99

               
               
               Conread position:1-423
               
               
               Cow position:chrX:13007031-13007426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):162, 99

               
               
               Conread position:1-423
               
               
               Cow position:chrX:26504793-26504383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):151, 38

               
               
               Conread position:1-453
               
               
               Cow position:chrX:16275283-16274824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:315
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:1-453
               
               
               Cow position:chrX:21602491-21602063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 128

               
               
               Conread position:1-457
               
               
               Cow position:chrX:19927918-19927471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:1-458
               
               
               Cow position:chrX:31192166-31192602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):161, 24

               
               
               Conread position:1-468
               
               
               Cow position:chrX:24122315-24122756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 113

               
               
               Conread position:1-468
               
               
               Cow position:chrX:24136792-24137227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 113

               
               
               Conread position:1-476
               
               
               Cow position:chrX:21270579-21271026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):158, 84

               
               
               Conread position:1-486
               
               
               Cow position:chrX:2483037-2483508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:1-486
               
               
               Cow position:chrX:8670199-8669690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:1-487
               
               
               Cow position:chrX:16565479-16564970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:1-489
               
               
               Cow position:chrX:2860195-2860701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:1-489
               
               
               Cow position:chrX:5284128-5284632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:1-489
               
               
               Cow position:chrX:5336967-5337484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:342
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):116, 125

               
               
               Conread position:1-489
               
               
               Cow position:chrX:7093205-7092700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:338
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:1-489
               
               
               Cow position:chrX:8586696-8586190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 40

               
               
               Conread position:1-489
               
               
               Cow position:chrX:8963452-8963958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:1-489
               
               
               Cow position:chrX:13077088-13077596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:1-489
               
               
               Cow position:chrX:13097662-13098170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:1-489
               
               
               Cow position:chrX:17478919-17479429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-490
               
               
               Cow position:chrX:22777918-22777468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):412, 129

               
               
               Conread position:1-492
               
               
               Cow position:chrX:21489837-21489328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:1-492
               
               
               Cow position:chrX:21586640-21586141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:1-492
               
               
               Cow position:chrX:22525998-22526512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-492
               
               
               Cow position:chrX:25332695-25332218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 24

               
               
               Conread position:2-255
               
               
               Cow position:chrX:17614798-17615043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):236, 35

               
               
               Conread position:2-398
               
               
               Cow position:chrX:11668834-11669218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:2-402
               
               
               Cow position:chrX:5299601-5299989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:2-407
               
               
               Cow position:chrX:29882646-29883042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:2-439
               
               
               Cow position:chrX:40057461-40057874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 10

               
               
               Conread position:2-453
               
               
               Cow position:chrX:11535087-11534656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 10

               
               
               Conread position:2-453
               
               
               Cow position:chrX:26628715-26629143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):161, 10

               
               
               Conread position:2-468
               
               
               Cow position:chrX:35017418-35016988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):337, 61

               
               
               Conread position:2-474
               
               
               Cow position:chrX:22131092-22131557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 108

               
               
               Conread position:2-474
               
               
               Cow position:chrX:31080136-31079681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 104

               
               
               Conread position:2-478
               
               
               Cow position:chrX:20796214-20795738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:2-482
               
               
               Cow position:chrX:16017522-16017989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 89

               
               
               Conread position:2-486
               
               
               Cow position:chrX:21829127-21828663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 10

               
               
               Conread position:2-486
               
               
               Cow position:chrX:23455967-23456444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:2-486
               
               
               Cow position:chrX:41151830-41151352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:2-488
               
               
               Cow position:chrX:18532607-18532110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 112

               
               
               Conread position:2-492
               
               
               Cow position:chrX:24484807-24485321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:3-472
               
               
               Cow position:chrX:24139385-24139832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:315
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):112, 45

               
               
               Conread position:3-476
               
               
               Cow position:chrX:2142903-2142450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:330
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:3-492
               
               
               Cow position:chrX:16236923-16236446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:4-489
               
               
               Cow position:chrX:2101462-2100961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:4-489
               
               
               Cow position:chrX:12804259-12804758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:338
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:6-154
               
               
               Cow position:chrX:27494302-27494155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):120, 108

               
               
               Conread position:7-226
               
               
               Cow position:chrX:29950970-29951186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):150, 5

               
               
               Conread position:7-247
               
               
               Cow position:chrX:12478318-12478081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):155, 122

               
               
               Conread position:7-454
               
               
               Cow position:chrX:32466850-32466412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 5

               
               
               Conread position:7-468
               
               
               Cow position:chrX:13052270-13051835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:7-489
               
               
               Cow position:chrX:29174004-29174503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 18

               
               
               Conread position:7-492
               
               
               Cow position:chrX:1833432-1832966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 100

               
               
               Conread position:7-492
               
               
               Cow position:chrX:12671945-12672448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 123

               
               
               Conread position:8-167
               
               
               Cow position:chrX:10531963-10532122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-204
               
               
               Cow position:chrX:29093100-29092903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):153, 121

               
               
               Conread position:8-210
               
               
               Cow position:chrX:23046741-23046540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-225
               
               
               Cow position:chrX:8454351-8454138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):157, 117

               
               
               Conread position:8-242
               
               
               Cow position:chrX:7029786-7029550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:8-252
               
               
               Cow position:chrX:30666343-30666585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-274
               
               
               Cow position:chrX:12289346-12289604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):157, 101

               
               
               Conread position:8-286
               
               
               Cow position:chrX:30179397-30179664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):150, 121

               
               
               Conread position:8-317
               
               
               Cow position:chrX:6873474-6873791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:8-317
               
               
               Cow position:chrX:7751494-7751192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:8-317
               
               
               Cow position:chrX:18218992-18218687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):157, 99

               
               
               Conread position:8-317
               
               
               Cow position:chrX:20316460-20316766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 24

               
               
               Conread position:8-429
               
               
               Cow position:chrX:30056267-30055845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 70

               
               
               Conread position:8-444
               
               
               Cow position:chrX:21289892-21290304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:8-458
               
               
               Cow position:chrX:38145655-38145219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:8-465
               
               
               Cow position:chrX:18954919-18955388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-466
               
               
               Cow position:chrX:1546530-1546084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 121

               
               
               Conread position:8-466
               
               
               Cow position:chrX:15598525-15598080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 119

               
               
               Conread position:8-468
               
               
               Cow position:chrX:26758995-26759442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-473
               
               
               Cow position:chrX:970361-969922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 87

               
               
               Conread position:8-473
               
               
               Cow position:chrX:21222523-21222092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:8-474
               
               
               Cow position:chrX:19185353-19185796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 82

               
               
               Conread position:8-486
               
               
               Cow position:chrX:13413520-13413995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 121

               
               
               Conread position:8-486
               
               
               Cow position:chrX:23276714-23276247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 17

               
               
               Conread position:8-486
               
               
               Cow position:chrX:23392006-23392473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chrX:25187255-25186789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chrX:26527571-26527105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chrX:28651527-28651973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 82

               
               
               Conread position:8-486
               
               
               Cow position:chrX:29853968-29854440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-486
               
               
               Cow position:chrX:32095363-32095821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 108

               
               
               Conread position:8-487
               
               
               Cow position:chrX:5862993-5862493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-487
               
               
               Cow position:chrX:12655158-12655651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:333
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-487
               
               
               Cow position:chrX:13398518-13399017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 106

               
               
               Conread position:8-487
               
               
               Cow position:chrX:20360335-20360835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 121

               
               
               Conread position:8-487
               
               
               Cow position:chrX:24325550-24326048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:330
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-487
               
               
               Cow position:chrX:28506343-28506842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 115

               
               
               Conread position:8-488
               
               
               Cow position:chrX:2603644-2603148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 116

               
               
               Conread position:8-488
               
               
               Cow position:chrX:9007937-9007443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 81

               
               
               Conread position:8-488
               
               
               Cow position:chrX:37848610-37848104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:8-489
               
               
               Cow position:chrX:3085306-3085805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 122

               
               
               Conread position:8-489
               
               
               Cow position:chrX:3421843-3422346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 116

               
               
               Conread position:8-489
               
               
               Cow position:chrX:5395367-5395869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chrX:8479300-8478809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 35

               
               
               Conread position:8-489
               
               
               Cow position:chrX:9172771-9173271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-489
               
               
               Cow position:chrX:9193049-9193549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-489
               
               
               Cow position:chrX:12280660-12281160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chrX:12341793-12341289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 117

               
               
               Conread position:8-489
               
               
               Cow position:chrX:15179834-15180342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 10

               
               
               Conread position:8-489
               
               
               Cow position:chrX:16363527-16364029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chrX:21339997-21339496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 87

               
               
               Conread position:8-489
               
               
               Cow position:chrX:24380906-24380404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 118

               
               
               Conread position:8-489
               
               
               Cow position:chrX:27426721-27427224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-489
               
               
               Cow position:chrX:28759030-28759528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 96

               
               
               Conread position:8-489
               
               
               Cow position:chrX:31187638-31188140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:8-489
               
               
               Cow position:chrX:39521502-39521000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:8-491
               
               
               Cow position:chrX:24088998-24088495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:8-492
               
               
               Cow position:chrX:22487784-22487315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 121

               
               
               Conread position:8-492
               
               
               Cow position:chrX:22619719-22620211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 92

               
               
               Conread position:8-492
               
               
               Cow position:chrX:28522101-28522593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:8-492
               
               
               Cow position:chrX:29284332-29283856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:8-492
               
               
               Cow position:chrX:30710949-30710481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 73

               
               
               Conread position:12-242
               
               
               Cow position:chrX:17668692-17668926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 69

               
               
               Conread position:12-457
               
               
               Cow position:chrX:30046523-30046947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 115

               
               
               Conread position:12-464
               
               
               Cow position:chrX:16698893-16698451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-466
               
               
               Cow position:chrX:15127651-15128090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:12-486
               
               
               Cow position:chrX:26767601-26768070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):431, 107

               
               
               Conread position:12-488
               
               
               Cow position:chrX:12704320-12704817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 105

               
               
               Conread position:12-489
               
               
               Cow position:chrX:3376632-3377125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 66

               
               
               Conread position:12-489
               
               
               Cow position:chrX:22610900-22610407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:327
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):153, 18

               
               
               Conread position:12-489
               
               
               Cow position:chrX:26400876-26401372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 60

               
               
               Conread position:12-492
               
               
               Cow position:chrX:29794531-29794979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 80

               
               
               Conread position:13-474
               
               
               Cow position:chrX:34988242-34987806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):58, 198

               
               
               Conread position:15-311
               
               
               Cow position:chrX:5324129-5324417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):150, 34

               
               
               Conread position:15-317
               
               
               Cow position:chrX:12182788-12182491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 115

               
               
               Conread position:16-470
               
               
               Cow position:chrX:30232516-30232958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 113

               
               
               Conread position:16-492
               
               
               Cow position:chrX:14787285-14787763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 88

               
               
               Conread position:20-260
               
               
               Cow position:chrX:23041729-23041970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:27-317
               
               
               Cow position:chrX:28562676-28562968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:27-372
               
               
               Cow position:chrX:37757357-37757042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:27-455
               
               
               Cow position:chrX:30369402-30369815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 79

               
               
               Conread position:27-489
               
               
               Cow position:chrX:6577272-6576791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 50

               
               
               Conread position:30-317
               
               
               Cow position:chrX:15980910-15981198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:35-224
               
               
               Cow position:chrX:27990204-27990396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:35-477
               
               
               Cow position:chrX:9901028-9901472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 95

               
               
               Conread position:35-489
               
               
               Cow position:chrX:21304946-21305415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:319
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:44-477
               
               
               Cow position:chrX:32430250-32429832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 175

               
               
               Conread position:47-375
               
               
               Cow position:chrX:22813959-22813631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:53-468
               
               
               Cow position:chrX:24376921-24376514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:53-489
               
               
               Cow position:chrX:14051630-14051175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:305
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):112, 77

               
               
               Conread position:65-424
               
               
               Cow position:chrX:35020188-35019848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 60

               
               
               Conread position:67-487
               
               
               Cow position:chrX:30010492-30010053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:78-489
               
               
               Cow position:chrX:979147-978712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:84-487
               
               
               Cow position:chrX:28553543-28553149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:91-492
               
               
               Cow position:chrX:22583407-22583830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):76, 39

               
               
               Conread position:97-492
               
               
               Cow position:chrX:13031922-13032333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:131-476
               
               
               Cow position:chrX:21316661-21316318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:146-330
               
               
               Cow position:chrX:27493878-27493696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:146-486
               
               
               Cow position:chrX:318546-318215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:183-489
               
               
               Cow position:chrX:29934828-29934528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:195-470
               
               
               Cow position:chrX:17668995-17669257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:207-477
               
               
               Cow position:chrX:31198032-31197775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:207-486
               
               
               Cow position:chrX:30186051-30186320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:207-489
               
               
               Cow position:chrX:8453847-8453563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:224-492
               
               
               Cow position:chrX:27990629-27990898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:232-488
               
               
               Cow position:chrX:28604698-28604939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):152, 14

               
               
               Conread position:234-491
               
               
               Cow position:chrX:30144119-30144373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:241-455
               
               
               Cow position:chrX:27984929-27985129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:241-483
               
               
               Cow position:chrX:30990565-30990807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):184, 171

               
               
               Conread position:261-474
               
               
               Cow position:chrX:31035048-31034837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:267-434
               
               
               Cow position:chrX:6283875-6284041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 145

               
               
               Conread position:288-492
               
               
               Cow position:chrX:31372281-31372081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:295-489
               
               
               Cow position:chrX:30190093-30190285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):149, 117

               
               
               Conread position:304-488
               
               
               Cow position:chrX:6910421-6910604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 108

               
               
               Conread position:304-489
               
               
               Cow position:chrX:37811675-37811492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:305-489
               
               
               Cow position:chrX:27972933-27973114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:312-490
               
               
               Cow position:chrX:25041134-25041302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):36, 0
Conread position:	1-210
Cow position:	chr1:28722640-28722431 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	164
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	161, 112
Conread position:	1-217
Cow position:	chr1:40953558-40953344 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	163
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	86, 44
Conread position:	1-224
Cow position:	chr1:18406342-18406572 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	167
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	82, 132
Conread position:	1-305
Cow position:	chr1:30027693-30027985 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	221
Alignm E-value:	8e-37
Alignm gaps (pig, cow):	162, 94
Conread position:	1-345
Cow position:	chr1:102555934-102555605 (view UCSC Genome Browser custom track)
Alignm length:	346
Alignm identity:	231
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	163, 32
Conread position:	1-367
Cow position:	chr1:67902570-67902944 (view UCSC Genome Browser custom track)
Alignm length:	383
Alignm identity:	260
Alignm E-value:	9e-38
Alignm gaps (pig, cow):	161, 94
Conread position:	1-385
Cow position:	chr1:98661443-98661814 (view UCSC Genome Browser custom track)
Alignm length:	394
Alignm identity:	272
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	43, 94
Conread position:	1-423
Cow position:	chr1:1461479-1461885 (view UCSC Genome Browser custom track)
Alignm length:	425
Alignm identity:	307
Alignm E-value:	0
Alignm gaps (pig, cow):	102, 129
Conread position:	1-442
Cow position:	chr1:89899854-89900263 (view UCSC Genome Browser custom track)
Alignm length:	445
Alignm identity:	322
Alignm E-value:	0
Alignm gaps (pig, cow):	162, 54
Conread position:	1-443
Cow position:	chr1:72120000-72119578 (view UCSC Genome Browser custom track)
Alignm length:	444
Alignm identity:	301
Alignm E-value:	0
Alignm gaps (pig, cow):	165, 109
Conread position:	1-453
Cow position:	chr1:97123680-97123262 (view UCSC Genome Browser custom track)
Alignm length:	454
Alignm identity:	320
Alignm E-value:	0
Alignm gaps (pig, cow):	161, 54
Conread position:	1-454
Cow position:	chr1:42176548-42176960 (view UCSC Genome Browser custom track)
Alignm length:	457
Alignm identity:	306
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	178, 74
Conread position:	1-461
Cow position:	chr1:5318608-5318176 (view UCSC Genome Browser custom track)
Alignm length:	465
Alignm identity:	308
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	162, 55
Conread position:	1-468
Cow position:	chr1:82918810-82919247 (view UCSC Genome Browser custom track)
Alignm length:	471
Alignm identity:	323
Alignm E-value:	0
Alignm gaps (pig, cow):	161, 81
Conread position:	1-474
Cow position:	chr1:55323674-55324137 (view UCSC Genome Browser custom track)
Alignm length:	475
Alignm identity:	351
Alignm E-value:	0
Alignm gaps (pig, cow):	162, 58
Conread position:	1-477
Cow position:	chr1:58201756-58202224 (view UCSC Genome Browser custom track)
Alignm length:	486
Alignm identity:	305
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	162, 12
Conread position:	1-481
Cow position:	chr1:79637087-79637564 (view UCSC Genome Browser custom track)
Alignm length:	491
Alignm identity:	354
Alignm E-value:	0
Alignm gaps (pig, cow):	94, 31
Conread position:	1-487
Cow position:	chr1:31396265-31395772 (view UCSC Genome Browser custom track)
Alignm length:	505
Alignm identity:	341
Alignm E-value:	0
Alignm gaps (pig, cow):	12, 109
Conread position:	1-488
Cow position:	chr1:33711909-33711440 (view UCSC Genome Browser custom track)
Alignm length:	494
Alignm identity:	340
Alignm E-value:	0
Alignm gaps (pig, cow):	6, 29
Conread position:	1-489
Cow position:	chr1:6708242-6708751 (view UCSC Genome Browser custom track)
Alignm length:	515
Alignm identity:	347
Alignm E-value:	0
Alignm gaps (pig, cow):	12, 126