Cow genome map
| Conread name: | Ss1.1-rplac_18183.5 |
| Conread position: | 56-436 |
| Cow position: | chr1:69374743-69374381 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 129-437 |
| Cow position: | chr1:30516494-30516802 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-438 |
| Cow position: | chr1:6621082-6621378 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 56-437 |
| Cow position: | chr10:15825822-15825441 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chr10:45269930-45270308 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 58-436 |
| Cow position: | chr10:69640061-69639686 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 56-437 |
| Cow position: | chr11:7724242-7724623 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-437 |
| Cow position: | chr11:43057929-43058306 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-437 |
| Cow position: | chr11:68582200-68581835 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-438 |
| Cow position: | chr11:82946827-82947123 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 324-437 |
| Cow position: | chr11:16255176-16255289 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chr12:30861723-30861342 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-509 |
| Cow position: | chr12:1662195-1662645 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 57-511 |
| Cow position: | chr12:1673621-1674079 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 81-509 |
| Cow position: | chr12:1636192-1635734 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 80 |
| Conread position: | 56-344 |
| Cow position: | chr13:27850667-27850378 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 56-437 |
| Cow position: | chr13:7598935-7599310 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 56-437 |
| Cow position: | chr13:52263850-52263469 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 335-437 |
| Cow position: | chr13:42559945-42560047 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-437 |
| Cow position: | chr15:11070422-11070015 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 56-437 |
| Cow position: | chr15:35507083-35506716 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 72-437 |
| Cow position: | chr15:14106155-14106520 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-483 |
| Cow position: | chr15:46718116-46717840 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 30-437 |
| Cow position: | chr16:49773453-49773860 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 56-437 |
| Cow position: | chr16:49012026-49011645 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chr16:52573337-52573717 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 56-437 |
| Cow position: | chr17:36084423-36084042 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-436 |
| Cow position: | chr18:46143377-46143754 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 56-437 |
| Cow position: | chr19:6987698-6987321 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 56-437 |
| Cow position: | chr19:29154124-29154505 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chr19:41835182-41834804 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 56-437 |
| Cow position: | chr2:58003333-58002955 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 228-437 |
| Cow position: | chr2:9225249-9225458 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chr20:28491520-28491900 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 235-437 |
| Cow position: | chr20:37397972-37397770 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-437 |
| Cow position: | chr22:41852829-41852450 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 264-437 |
| Cow position: | chr22:41962300-41962477 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 147 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 40-485 |
| Cow position: | chr23:26337777-26338230 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 73 |
| Conread position: | 57-506 |
| Cow position: | chr23:24185732-24186183 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 0 |
| Conread position: | 57-509 |
| Cow position: | chr23:24170542-24171002 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 0 |
| Conread position: | 57-509 |
| Cow position: | chr23:24223257-24223717 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 0 |
| Conread position: | 57-510 |
| Cow position: | chr23:25804041-25804491 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 88-522 |
| Cow position: | chr23:26341284-26340847 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 411 |
| Conread position: | 246-437 |
| Cow position: | chr23:35659464-35659655 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 270-437 |
| Cow position: | chr23:5740794-5740627 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 142 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-437 |
| Cow position: | chr24:40172648-40172991 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 80-437 |
| Cow position: | chr27:26613730-26614087 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 209-437 |
| Cow position: | chr27:27865540-27865768 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 297-440 |
| Cow position: | chr28:27049907-27050050 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chr29:1838845-1839226 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-443 |
| Cow position: | chr3:17614422-17614828 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 37-443 |
| Cow position: | chr3:17624774-17624368 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 54-438 |
| Cow position: | chr3:62459271-62458887 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-504 |
| Cow position: | chr3:62478432-62477981 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 0 |
| Conread position: | 56-436 |
| Cow position: | chr3:1077454-1077833 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 56-506 |
| Cow position: | chr3:62431043-62430593 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 391 |
| Conread position: | 56-511 |
| Cow position: | chr3:62448577-62449040 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 403 |
| Conread position: | 57-442 |
| Cow position: | chr3:17591905-17592290 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-509 |
| Cow position: | chr3:17645420-17645888 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 305-437 |
| Cow position: | chr3:56588624-56588754 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 56-437 |
| Cow position: | chr4:15925998-15925617 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 198-438 |
| Cow position: | chr4:64390607-64390847 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 282-437 |
| Cow position: | chr4:35724460-35724305 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 131 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chr5:13917376-13916995 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-437 |
| Cow position: | chr5:31548158-31548532 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 329-437 |
| Cow position: | chr5:8026504-8026396 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-495 |
| Cow position: | chr6:39764561-39764116 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 436 |
| Conread position: | 56-437 |
| Cow position: | chr6:7483635-7484015 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 56-437 |
| Cow position: | chr6:56962169-56962551 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 56-506 |
| Cow position: | chr6:39755835-39755384 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 400 |
| Conread position: | 82-437 |
| Cow position: | chr6:20715437-20715792 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-380 |
| Cow position: | chr6:37164862-37165032 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-507 |
| Cow position: | chr7:2957916-2958368 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 56-437 |
| Cow position: | chr7:13894777-13894396 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 198-437 |
| Cow position: | chr8:11335272-11335033 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 264-437 |
| Cow position: | chr8:36912090-36911917 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 143 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-437 |
| Cow position: | chr9:36521604-36521256 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 194-437 |
| Cow position: | chr9:35746073-35746316 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-437 |
| Cow position: | chrX:6377840-6378221 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-446 |
| Cow position: | chrX:15369310-15369626 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 308, 37 |
| Conread position: | 163-437 |
| Cow position: | chrX:22916340-22916066 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |