Cow genome map
| Conread name: | Ss1.1-rpliv0109_k2.5 |
| Conread position: | 299-549 |
| Cow position: | chr1:94548470-94548220 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 180 |
| Conread position: | 303-445 |
| Cow position: | chr1:9038005-9038152 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 305-551 |
| Cow position: | chr1:11188960-11189199 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 77, 155 |
| Conread position: | 308-455 |
| Cow position: | chr1:1055774-1055628 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 308-455 |
| Cow position: | chr1:60002067-60002218 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 312-469 |
| Cow position: | chr1:61566783-61566940 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-551 |
| Cow position: | chr1:1917058-1917303 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 312-551 |
| Cow position: | chr1:13009947-13009708 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 74, 192 |
| Conread position: | 345-551 |
| Cow position: | chr1:660726-660929 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 303-446 |
| Cow position: | chr10:16802304-16802156 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 310-455 |
| Cow position: | chr10:21492612-21492760 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 310-551 |
| Cow position: | chr10:3645742-3645986 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 316-551 |
| Cow position: | chr10:35784693-35784933 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 300-549 |
| Cow position: | chr11:11669673-11669426 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 81, 177 |
| Conread position: | 303-551 |
| Cow position: | chr11:47976799-47976535 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 308-431 |
| Cow position: | chr11:13038680-13038803 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-431 |
| Cow position: | chr11:13038871-13038998 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 308-444 |
| Cow position: | chr11:48889242-48889100 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 308-504 |
| Cow position: | chr11:27617047-27617248 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 309-446 |
| Cow position: | chr11:70447733-70447875 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 310-551 |
| Cow position: | chr11:60195588-60195833 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 71, 190 |
| Conread position: | 312-548 |
| Cow position: | chr11:718429-718196 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 342-551 |
| Cow position: | chr11:37734290-37734078 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 135 |
| Conread position: | 312-551 |
| Cow position: | chr12:17737194-17737442 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 9, 170 |
| Conread position: | 312-551 |
| Cow position: | chr12:42327359-42327118 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 312-551 |
| Cow position: | chr12:45842843-45843081 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 176 |
| Conread position: | 302-551 |
| Cow position: | chr13:52354382-52354129 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 305-455 |
| Cow position: | chr13:12458650-12458495 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 305-455 |
| Cow position: | chr13:16553179-16553334 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 306-551 |
| Cow position: | chr13:32727546-32727290 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 10, 250 |
| Conread position: | 306-553 |
| Cow position: | chr13:32748339-32748089 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 75, 201 |
| Conread position: | 308-444 |
| Cow position: | chr13:51840611-51840751 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 312-551 |
| Cow position: | chr13:27867264-27867022 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 211 |
| Conread position: | 319-431 |
| Cow position: | chr13:34288060-34287944 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 319-549 |
| Cow position: | chr13:27391266-27391044 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 427-551 |
| Cow position: | chr13:34287828-34287704 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-551 |
| Cow position: | chr14:43420065-43420307 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 308-441 |
| Cow position: | chr14:1494815-1494680 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 312-551 |
| Cow position: | chr14:33460560-33460322 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 136 |
| Conread position: | 303-551 |
| Cow position: | chr15:18648341-18648090 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 78, 210 |
| Conread position: | 306-551 |
| Cow position: | chr15:8335868-8335619 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 315-447 |
| Cow position: | chr15:8461075-8461211 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 381-551 |
| Cow position: | chr15:8721835-8721999 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 301-444 |
| Cow position: | chr16:47284299-47284447 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 303-447 |
| Cow position: | chr16:20891533-20891682 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 138 |
| Conread position: | 304-421 |
| Cow position: | chr16:25615433-25615554 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 308-447 |
| Cow position: | chr16:52864699-52864556 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 308-543 |
| Cow position: | chr16:42293430-42293187 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 308-551 |
| Cow position: | chr16:45726883-45726637 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 191 |
| Conread position: | 312-491 |
| Cow position: | chr16:34819593-34819416 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 312-511 |
| Cow position: | chr16:44695469-44695275 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 312-551 |
| Cow position: | chr16:4074738-4074511 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 314-493 |
| Cow position: | chr16:35327281-35327462 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 350-551 |
| Cow position: | chr16:33147197-33146991 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 310-418 |
| Cow position: | chr17:5592393-5592279 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 312-495 |
| Cow position: | chr17:35347613-35347430 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 9, 97 |
| Conread position: | 312-551 |
| Cow position: | chr17:41272037-41271788 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 316-493 |
| Cow position: | chr17:5659084-5658901 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 298-551 |
| Cow position: | chr18:44216620-44216365 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 7, 244 |
| Conread position: | 305-551 |
| Cow position: | chr18:37369904-37370154 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 138 |
| Conread position: | 312-551 |
| Cow position: | chr18:55557998-55558239 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 156 |
| Conread position: | 305-547 |
| Cow position: | chr19:2996306-2996061 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 77, 194 |
| Conread position: | 310-551 |
| Cow position: | chr19:26995820-26995577 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 77, 138 |
| Conread position: | 311-531 |
| Cow position: | chr19:28236267-28236494 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 315-469 |
| Cow position: | chr19:49312690-49312533 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 299-511 |
| Cow position: | chr2:81710570-81710369 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 305-515 |
| Cow position: | chr2:77516101-77515888 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 308-476 |
| Cow position: | chr2:37883073-37882899 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 312-549 |
| Cow position: | chr2:81468755-81468995 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 312-551 |
| Cow position: | chr2:15561669-15561425 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 319-551 |
| Cow position: | chr2:15813896-15814125 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 68, 100 |
| Conread position: | 326-551 |
| Cow position: | chr2:16010626-16010402 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 401-546 |
| Cow position: | chr2:39911319-39911464 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-547 |
| Cow position: | chr20:33059448-33059209 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 312-551 |
| Cow position: | chr20:26950982-26951226 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 9, 176 |
| Conread position: | 321-551 |
| Cow position: | chr20:42623767-42623994 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 304-551 |
| Cow position: | chr21:35397061-35396810 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 308-455 |
| Cow position: | chr21:29075613-29075461 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 316-550 |
| Cow position: | chr21:47462594-47462354 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 297-548 |
| Cow position: | chr22:10594084-10594344 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 7 |
| Conread position: | 309-445 |
| Cow position: | chr22:9254960-9255099 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 312-551 |
| Cow position: | chr22:10220437-10220677 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 181, 69 |
| Conread position: | 312-496 |
| Cow position: | chr23:22752298-22752110 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 9, 84 |
| Conread position: | 312-551 |
| Cow position: | chr23:10718048-10718292 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 9, 168 |
| Conread position: | 315-441 |
| Cow position: | chr23:6594440-6594308 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 321-556 |
| Cow position: | chr23:1045554-1045326 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 145, 42 |
| Conread position: | 310-446 |
| Cow position: | chr24:26700135-26699995 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 71, 103 |
| Conread position: | 349-551 |
| Cow position: | chr24:40059435-40059641 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 304-549 |
| Cow position: | chr25:17678574-17678326 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 122 |
| Conread position: | 308-456 |
| Cow position: | chr25:792754-792907 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 103 |
| Conread position: | 312-541 |
| Cow position: | chr25:14494785-14495016 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 408-551 |
| Cow position: | chr25:33835958-33835814 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 295-447 |
| Cow position: | chr27:15469246-15469090 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 308-440 |
| Cow position: | chr27:10070177-10070313 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 308-442 |
| Cow position: | chr27:15455608-15455470 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 315-551 |
| Cow position: | chr27:30573799-30574038 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 332-551 |
| Cow position: | chr27:486403-486182 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 174 |
| Conread position: | 298-551 |
| Cow position: | chr28:27345845-27345588 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 305-545 |
| Cow position: | chr28:17196452-17196205 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 308-455 |
| Cow position: | chr28:5639661-5639508 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 365-549 |
| Cow position: | chr28:2936-2753 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 293-551 |
| Cow position: | chr29:44133038-44132775 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 207 |
| Conread position: | 301-549 |
| Cow position: | chr29:39530011-39530255 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 78, 117 |
| Conread position: | 302-544 |
| Cow position: | chr29:18283891-18283641 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 79, 201 |
| Conread position: | 308-446 |
| Cow position: | chr29:36020005-36020148 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 308-455 |
| Cow position: | chr29:4555485-4555338 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-484 |
| Cow position: | chr29:28498179-28498341 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 312-551 |
| Cow position: | chr29:22427188-22426947 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 64, 166 |
| Conread position: | 319-551 |
| Cow position: | chr29:7616546-7616787 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 164 |
| Conread position: | 352-537 |
| Cow position: | chr29:44140710-44140523 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 287-551 |
| Cow position: | chr3:81454156-81453882 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 299-488 |
| Cow position: | chr3:40713687-40713880 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 305-551 |
| Cow position: | chr3:72874080-72874331 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 308-446 |
| Cow position: | chr3:33717786-33717928 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 333-543 |
| Cow position: | chr3:78123398-78123186 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 303-531 |
| Cow position: | chr4:11505028-11505258 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 78, 123 |
| Conread position: | 308-549 |
| Cow position: | chr4:55256178-55256420 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 149 |
| Conread position: | 312-550 |
| Cow position: | chr4:45486767-45486539 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 69, 93 |
| Conread position: | 312-551 |
| Cow position: | chr4:57114310-57114066 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 313-551 |
| Cow position: | chr4:60576736-60576991 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 365-551 |
| Cow position: | chr4:44598324-44598510 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 295-548 |
| Cow position: | chr5:9417042-9416786 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 299-447 |
| Cow position: | chr5:48051384-48051537 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 299-514 |
| Cow position: | chr5:61772710-61772929 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 299-551 |
| Cow position: | chr5:59109960-59109706 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 302-551 |
| Cow position: | chr5:39946896-39947151 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 5, 176 |
| Conread position: | 354-551 |
| Cow position: | chr5:26227810-26228013 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 376-551 |
| Cow position: | chr5:59053394-59053219 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-551 |
| Cow position: | chr5:58354386-58354550 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 399-551 |
| Cow position: | chr5:67958017-67957869 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 299-551 |
| Cow position: | chr6:17403206-17403460 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 89, 116 |
| Conread position: | 308-444 |
| Cow position: | chr6:47308136-47308277 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 317-552 |
| Cow position: | chr6:55274971-55274742 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 305-551 |
| Cow position: | chr7:37379139-37378889 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 82, 226 |
| Conread position: | 305-551 |
| Cow position: | chr7:41981468-41981712 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 182 |
| Conread position: | 306-493 |
| Cow position: | chr7:940065-939872 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 308-455 |
| Cow position: | chr7:49491625-49491473 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 312-551 |
| Cow position: | chr7:12412828-12412585 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 312-558 |
| Cow position: | chr7:21993393-21993645 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 364-549 |
| Cow position: | chr7:12405390-12405573 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 305-551 |
| Cow position: | chr8:27841847-27842095 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 193 |
| Conread position: | 306-455 |
| Cow position: | chr8:32304354-32304508 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 308-446 |
| Cow position: | chr8:59800198-59800056 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 312-551 |
| Cow position: | chr8:61554154-61554395 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 69, 167 |
| Conread position: | 313-550 |
| Cow position: | chr8:47761074-47760834 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 12, 104 |
| Conread position: | 330-549 |
| Cow position: | chr8:5693906-5694128 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 305-541 |
| Cow position: | chr9:33227776-33227541 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 147 |
| Conread position: | 306-444 |
| Cow position: | chr9:9279444-9279302 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 113 |
| Conread position: | 306-447 |
| Cow position: | chr9:25633897-25634043 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 308-446 |
| Cow position: | chr9:15792414-15792272 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 333-551 |
| Cow position: | chr9:53943343-53943565 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 303-551 |
| Cow position: | chrX:15390647-15390409 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 308-447 |
| Cow position: | chrX:34817009-34817152 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 308-455 |
| Cow position: | chrX:8663284-8663133 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 308-516 |
| Cow position: | chrX:14280167-14279969 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 308-549 |
| Cow position: | chrX:15495746-15495508 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 79, 30 |
| Conread position: | 309-447 |
| Cow position: | chrX:34804355-34804496 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 134 |
| Conread position: | 342-504 |
| Cow position: | chrX:28884859-28884694 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 129 |