Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rpliv0124_d2.5
        

               Conread position:
               17-378
               

               Cow position:
               chr1:2000230-1999869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               1-287
               

               Cow position:
               chr10:9010146-9009860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               142, 119
               

               Conread position:
               2-337
               

               Cow position:
               chr10:8996333-8995997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               327, 0
               

               Conread position:
               2-367
               

               Cow position:
               chr10:9010397-9010032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               133, 139
               

               Conread position:
               2-399
               

               Cow position:
               chr10:9010229-9009832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               301, 306
               

               Conread position:
               2-411
               

               Cow position:
               chr10:8996417-8996008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               2-414
               

               Cow position:
               chr10:9010481-9010069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               2-419
               

               Cow position:
               chr10:8996753-8996337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 216
               

               Conread position:
               6-414
               

               Cow position:
               chr10:8996497-8996089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               259
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-414
               

               Cow position:
               chr10:8996833-8996425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 135
               

               Conread position:
               14-386
               

               Cow position:
               chr10:21939057-21938687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               16, 6
               

               Conread position:
               14-410
               

               Cow position:
               chr10:9031268-9031664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr10:8996657-8996257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               253
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr10:9010301-9009901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-427
               

               Cow position:
               chr10:8996573-8996160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               265
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               43, 36
               

               Conread position:
               15-384
               

               Cow position:
               chr10:21939140-21938771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               18, 28
               

               Conread position:
               58-414
               

               Cow position:
               chr10:9031228-9031584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               87, 96
               

               Conread position:
               72-414
               

               Cow position:
               chr10:8996851-8996509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr11:74555013-74554600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-335
               

               Cow position:
               chr11:74554504-74554175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-399
               

               Cow position:
               chr11:74555091-74554699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-396
               

               Cow position:
               chr11:74554838-74554450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               258
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               137, 146
               

               Conread position:
               9-413
               

               Cow position:
               chr11:74554671-74554265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 147
               

               Conread position:
               14-414
               

               Cow position:
               chr11:74554916-74554516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               295, 284
               

               Conread position:
               17-414
               

               Cow position:
               chr11:74554577-74554180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 286
               

               Conread position:
               70-414
               

               Cow position:
               chr11:74555111-74554768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               62, 6
               

               Conread position:
               1-286
               

               Cow position:
               chr13:39984579-39984864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               220, 201
               

               Conread position:
               6-397
               

               Cow position:
               chr13:39930576-39930967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               47, 39
               

               Conread position:
               7-397
               

               Cow position:
               chr13:22124774-22125164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               62, 57
               

               Conread position:
               7-397
               

               Cow position:
               chr13:22124858-22125248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               214, 206
               

               Conread position:
               8-369
               

               Cow position:
               chr13:22124691-22125052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-356
               

               Cow position:
               chr13:39930836-39931176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               14-397
               

               Cow position:
               chr13:39930668-39931051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               14-397
               

               Cow position:
               chr13:39930752-39931135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               16-368
               

               Cow position:
               chr13:39984258-39984610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               278, 270
               

               Conread position:
               16-414
               

               Cow position:
               chr13:39984174-39984572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               41, 35
               

               Conread position:
               17-370
               

               Cow position:
               chr13:39984511-39984864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               40, 34
               

               Conread position:
               17-414
               

               Cow position:
               chr13:39984091-39984488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               134, 127
               

               Conread position:
               17-414
               

               Cow position:
               chr13:39984427-39984824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               128, 137
               

               Conread position:
               55-396
               

               Cow position:
               chr13:56292137-56291795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               276, 0
               

               Conread position:
               68-366
               

               Cow position:
               chr13:56333622-56333920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               235, 218
               

               Conread position:
               68-414
               

               Cow position:
               chr13:39983974-39984320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               83, 76
               

               Conread position:
               79-414
               

               Cow position:
               chr13:56292194-56291862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-162
               

               Cow position:
               chr14:25837065-25837226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-265
               

               Cow position:
               chr14:25860538-25860802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-358
               

               Cow position:
               chr14:25795424-25795067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               221
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               129, 117
               

               Conread position:
               1-369
               

               Cow position:
               chr14:25877505-25877873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 45
               

               Conread position:
               1-396
               

               Cow position:
               chr14:25859698-25860093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 296
               

               Conread position:
               1-397
               

               Cow position:
               chr14:3156328-3156715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               175, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25794584-25794170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               246, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25794920-25794507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               39, 22
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25836561-25836974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25859866-25860279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 144
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25860202-25860615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25876917-25877330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               399, 394
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25877001-25877414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 62
               

               Conread position:
               1-414
               

               Cow position:
               chr14:25877253-25877666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-419
               

               Cow position:
               chr14:3155908-3156325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               272
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               1-423
               

               Cow position:
               chr14:3155419-3155841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 211
               

               Conread position:
               1-427
               

               Cow position:
               chr14:25877337-25877763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               392, 384
               

               Conread position:
               2-357
               

               Cow position:
               chr14:447768-448123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               45, 51
               

               Conread position:
               2-368
               

               Cow position:
               chr14:680906-681272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-368
               

               Cow position:
               chr14:3061730-3061364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               139, 128
               

               Conread position:
               2-378
               

               Cow position:
               chr14:3127675-3127299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               222, 188
               

               Conread position:
               2-380
               

               Cow position:
               chr14:3080079-3079701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               247
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-397
               

               Cow position:
               chr14:25895293-25895688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-400
               

               Cow position:
               chr14:25784279-25784677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               250
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-411
               

               Cow position:
               chr14:25783523-25783932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25783691-25784103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               265
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               127, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25784027-25784439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               146, 141
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25784195-25784607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 203
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25794751-25794339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               204, 212
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25795339-25794927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               271, 291
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25836058-25836470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25836142-25836554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25836310-25836722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25836478-25836890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25836730-25837142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 150
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25859363-25859775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 138
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25859783-25860195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25860035-25860447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 134
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25877086-25877498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 134
               

               Conread position:
               2-414
               

               Cow position:
               chr14:25895377-25895789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               385, 391
               

               Conread position:
               2-419
               

               Cow position:
               chr14:3080247-3079831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 68
               

               Conread position:
               2-419
               

               Cow position:
               chr14:3101325-3100912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               134, 118
               

               Conread position:
               2-426
               

               Cow position:
               chr14:25835806-25836230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-427
               

               Cow position:
               chr14:25860287-25860712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               379, 391
               

               Conread position:
               2-732
               

               Cow position:
               chr14:25836814-25837530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               627
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               543, 0
               

               Conread position:
               3-411
               

               Cow position:
               chr14:25794666-25794257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               247
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               326, 0
               

               Conread position:
               3-411
               

               Cow position:
               chr14:25794834-25794426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               191, 207
               

               Conread position:
               3-414
               

               Cow position:
               chr14:25910763-25911170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               4-414
               

               Cow position:
               chr14:25859448-25859859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 365
               

               Conread position:
               6-369
               

               Cow position:
               chr14:3127755-3127392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               219, 212
               

               Conread position:
               6-378
               

               Cow position:
               chr14:3080579-3080207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               248
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               6-413
               

               Cow position:
               chr14:3156081-3156488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               50, 41
               

               Conread position:
               6-414
               

               Cow position:
               chr14:680406-680814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               218, 206
               

               Conread position:
               6-414
               

               Cow position:
               chr14:3128091-3127683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-414
               

               Cow position:
               chr14:25860123-25860531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-414
               

               Cow position:
               chr14:25895213-25895621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-414
               

               Cow position:
               chr14:25895885-25896293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-415
               

               Cow position:
               chr14:25896053-25896459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 303
               

               Conread position:
               6-427
               

               Cow position:
               chr14:25895129-25895550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 40
               

               Conread position:
               7-200
               

               Cow position:
               chr14:25911099-25911292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-387
               

               Cow position:
               chr14:680239-680619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               247
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               62, 56
               

               Conread position:
               7-414
               

               Cow position:
               chr14:25876335-25876742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-414
               

               Cow position:
               chr14:25876419-25876826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               383, 378
               

               Conread position:
               7-414
               

               Cow position:
               chr14:25894962-25895369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 6
               

               Conread position:
               7-414
               

               Cow position:
               chr14:25895046-25895453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 122
               

               Conread position:
               7-427
               

               Cow position:
               chr14:3080830-3080410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 37
               

               Conread position:
               7-427
               

               Cow position:
               chr14:25895634-25896054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               372, 378
               

               Conread position:
               8-202
               

               Cow position:
               chr14:25877680-25877874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-349
               

               Cow position:
               chr14:25860461-25860802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 38
               

               Conread position:
               8-396
               

               Cow position:
               chr14:25876756-25877144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-405
               

               Cow position:
               chr14:25895803-25896200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-412
               

               Cow position:
               chr14:25783445-25783849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               206, 197
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25795165-25794759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               100, 133
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25836232-25836638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25859537-25859943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 132
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25859957-25860363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25876504-25876910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25876588-25876994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25876672-25877078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25876840-25877246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-414
               

               Cow position:
               chr14:25910848-25911254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               8-415
               

               Cow position:
               chr14:25860377-25860784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 120
               

               Conread position:
               8-415
               

               Cow position:
               chr14:25877428-25877835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 120
               

               Conread position:
               13-321
               

               Cow position:
               chr14:447947-448255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               14-344
               

               Cow position:
               chr14:25910362-25910691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               127, 75
               

               Conread position:
               14-368
               

               Cow position:
               chr14:3127999-3127645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               43, 30
               

               Conread position:
               14-369
               

               Cow position:
               chr14:680498-680853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               116, 136
               

               Conread position:
               14-379
               

               Cow position:
               chr14:25835650-25836015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               236
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-380
               

               Cow position:
               chr14:680834-681200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               14-391
               

               Cow position:
               chr14:3100730-3100352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               339, 334
               

               Conread position:
               14-397
               

               Cow position:
               chr14:3127831-3127448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               14-405
               

               Cow position:
               chr14:25835734-25836125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-407
               

               Cow position:
               chr14:447864-448257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               43, 33
               

               Conread position:
               14-411
               

               Cow position:
               chr14:3080151-3079754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               258
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               43, 30
               

               Conread position:
               14-414
               

               Cow position:
               chr14:447612-448012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               33, 46
               

               Conread position:
               14-414
               

               Cow position:
               chr14:447696-448096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               260
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               39, 29
               

               Conread position:
               14-414
               

               Cow position:
               chr14:680750-681150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               43, 36
               

               Conread position:
               14-414
               

               Cow position:
               chr14:3061550-3061150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               274, 295
               

               Conread position:
               14-414
               

               Cow position:
               chr14:3080739-3080339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               260
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               43, 30
               

               Conread position:
               14-414
               

               Cow position:
               chr14:3080991-3080591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr14:25783367-25783767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               18, 12
               

               Conread position:
               14-414
               

               Cow position:
               chr14:25783955-25784355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               257
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr14:25835986-25836386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr14:25836406-25836806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr14:25859291-25859691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 56
               

               Conread position:
               14-414
               

               Cow position:
               chr14:25877182-25877582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr14:25895473-25895873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 203
               

               Conread position:
               14-422
               

               Cow position:
               chr14:680582-680989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               14-427
               

               Cow position:
               chr14:3127915-3127502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               261
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               15-411
               

               Cow position:
               chr14:3156006-3156402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               107, 101
               

               Conread position:
               16-371
               

               Cow position:
               chr14:25910940-25911295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 134
               

               Conread position:
               16-411
               

               Cow position:
               chr14:25895979-25896374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 112
               

               Conread position:
               17-378
               

               Cow position:
               chr14:3080652-3080291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               235
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               17-414
               

               Cow position:
               chr14:25783874-25784271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               253
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               197, 188
               

               Conread position:
               17-414
               

               Cow position:
               chr14:25836661-25837058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               17-414
               

               Cow position:
               chr14:25895560-25895957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               17-414
               

               Cow position:
               chr14:25895728-25896125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               23-414
               

               Cow position:
               chr14:25835911-25836302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               39-405
               

               Cow position:
               chr14:25894829-25895192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               339, 90
               

               Conread position:
               48-368
               

               Cow position:
               chr14:25894919-25895239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               55-414
               

               Cow position:
               chr14:25795034-25794675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               96, 79
               

               Conread position:
               56-380
               

               Cow position:
               chr14:447570-447894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               243, 249
               

               Conread position:
               56-414
               

               Cow position:
               chr14:680204-680562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               13, 6
               

               Conread position:
               56-414
               

               Cow position:
               chr14:25876300-25876658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               107, 121
               

               Conread position:
               67-414
               

               Cow position:
               chr14:25859680-25860027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               303, 322
               

               Conread position:
               68-386
               

               Cow position:
               chr14:25859177-25859495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               217
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               57, 44
               

               Conread position:
               68-414
               

               Cow position:
               chr14:25859261-25859607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               233
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               310, 302
               

               Conread position:
               74-369
               

               Cow position:
               chr14:3155408-3155703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               91-414
               

               Cow position:
               chr14:25910522-25910834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               95-414
               

               Cow position:
               chr14:25835647-25835966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               292, 297
               

               Conread position:
               149-397
               

               Cow position:
               chr14:420633-420881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               152-405
               

               Cow position:
               chr14:25876228-25876481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               72, 50
               

               Conread position:
               152-414
               

               Cow position:
               chr14:447582-447844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               60, 74
               

               Conread position:
               152-427
               

               Cow position:
               chr14:3128113-3127838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               158-405
               

               Cow position:
               chr14:680222-680469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               158-419
               

               Cow position:
               chr14:3155408-3155668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               258, 0
               

               Conread position:
               160-414
               

               Cow position:
               chr14:25783345-25783599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 35
               

               Conread position:
               162-414
               

               Cow position:
               chr14:3155331-3155580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               167-419
               

               Cow position:
               chr14:447513-447764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               249, 0
               

               Conread position:
               1-391
               

               Cow position:
               chr16:14627155-14626764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               252
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               56, 49
               

               Conread position:
               2-414
               

               Cow position:
               chr16:14627238-14626826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-425
               

               Cow position:
               chr16:14627736-14627319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               193, 181
               

               Conread position:
               14-339
               

               Cow position:
               chr16:14627058-14626733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               21, 27
               

               Conread position:
               14-414
               

               Cow position:
               chr16:14627310-14626910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               211, 204
               

               Conread position:
               14-414
               

               Cow position:
               chr16:14627478-14627078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               256
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               20, 28
               

               Conread position:
               16-375
               

               Cow position:
               chr16:14627896-14627537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               58-414
               

               Cow position:
               chr16:14627518-14627162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               60, 68
               

               Conread position:
               151-414
               

               Cow position:
               chr16:14627845-14627582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-369
               

               Cow position:
               chr17:22590176-22589808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               119, 136
               

               Conread position:
               1-400
               

               Cow position:
               chr17:22589924-22589525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-406
               

               Cow position:
               chr17:22499301-22498896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               223, 216
               

               Conread position:
               1-414
               

               Cow position:
               chr17:22473344-22473757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 44
               

               Conread position:
               1-414
               

               Cow position:
               chr17:22552842-22552429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               264
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-356
               

               Cow position:
               chr17:22473597-22473952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               151, 142
               

               Conread position:
               2-365
               

               Cow position:
               chr17:22589755-22589392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               136, 114
               

               Conread position:
               2-414
               

               Cow position:
               chr17:22452370-22451958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               268
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               118, 110
               

               Conread position:
               2-414
               

               Cow position:
               chr17:22473429-22473841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               204, 200
               

               Conread position:
               2-414
               

               Cow position:
               chr17:22499132-22498720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-414
               

               Cow position:
               chr17:22589671-22589259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-418
               

               Cow position:
               chr17:22452202-22451786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               271
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               3-414
               

               Cow position:
               chr17:22499215-22498804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               132, 138
               

               Conread position:
               6-359
               

               Cow position:
               chr17:22452030-22451677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               208, 198
               

               Conread position:
               7-414
               

               Cow position:
               chr17:22499045-22498636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               9, 45
               

               Conread position:
               13-414
               

               Cow position:
               chr17:22552662-22552261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               256
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-345
               

               Cow position:
               chr17:22551821-22551490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               14-366
               

               Cow position:
               chr17:22552745-22552393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-378
               

               Cow position:
               chr17:22499372-22499008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               137, 132
               

               Conread position:
               14-396
               

               Cow position:
               chr17:22589827-22589445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               22, 28
               

               Conread position:
               14-397
               

               Cow position:
               chr17:22552073-22551690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-397
               

               Cow position:
               chr17:22552493-22552110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               139, 132
               

               Conread position:
               14-400
               

               Cow position:
               chr17:22498952-22498566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               29, 9
               

               Conread position:
               14-411
               

               Cow position:
               chr17:22590079-22589682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-411
               

               Cow position:
               chr17:22590247-22589850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr17:22452106-22451706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 12
               

               Conread position:
               14-414
               

               Cow position:
               chr17:22551989-22551589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               chr17:22552241-22551841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               14-414
               

               Cow position:
               chr17:22552577-22552177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               374, 379
               

               Conread position:
               14-414
               

               Cow position:
               chr17:22553081-22552681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               14-414
               

               Cow position:
               chr17:22589995-22589595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-414
               

               Cow position:
               chr17:22452273-22451874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               253
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               25, 8
               

               Conread position:
               15-414
               

               Cow position:
               chr17:22473274-22473673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-414
               

               Cow position:
               chr17:22552324-22551925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-414
               

               Cow position:
               chr17:22552408-22552009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-414
               

               Cow position:
               chr17:22552912-22552513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               256
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               41-396
               

               Cow position:
               chr17:22552970-22552615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               56-367
               

               Cow position:
               chr17:22551863-22551552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               56-411
               

               Cow position:
               chr17:22452400-22452045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               148, 135
               

               Conread position:
               57-388
               

               Cow position:
               chr17:22553122-22552791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               68-395
               

               Cow position:
               chr17:22589521-22589194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               131, 143
               

               Conread position:
               76-411
               

               Cow position:
               chr17:22590269-22589934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               77-405
               

               Cow position:
               chr17:22499393-22499065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               161-414
               

               Cow position:
               chr17:22499393-22499140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               213-414
               

               Cow position:
               chr17:22452411-22452210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               160, 144
               

               Conread position:
               1-286
               

               Cow position:
               chr18:51839130-51838845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               218, 225
               

               Conread position:
               1-356
               

               Cow position:
               chr18:51969686-51970032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               300, 119
               

               Conread position:
               1-360
               

               Cow position:
               chr18:40324621-40324262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               29, 22
               

               Conread position:
               1-360
               

               Cow position:
               chr18:55018227-55018586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               137, 120
               

               Conread position:
               1-370
               

               Cow position:
               chr18:43119892-43119523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-370
               

               Cow position:
               chr18:51969436-51969803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               178, 0
               

               Conread position:
               1-374
               

               Cow position:
               chr18:51812369-51811996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-394
               

               Cow position:
               chr18:51368171-51367779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               56, 44
               

               Conread position:
               1-396
               

               Cow position:
               chr18:42675058-42674666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               122, 140
               

               Conread position:
               1-397
               

               Cow position:
               chr18:42792487-42792883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               53, 48
               

               Conread position:
               1-397
               

               Cow position:
               chr18:43168139-43168535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 44
               

               Conread position:
               1-405
               

               Cow position:
               chr18:51765315-51764911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               210, 201
               

               Conread position:
               1-405
               

               Cow position:
               chr18:51839466-51839062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               251
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-406
               

               Cow position:
               chr18:51789126-51788721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               218, 225
               

               Conread position:
               1-406
               

               Cow position:
               chr18:51874235-51874640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               210, 201
               

               Conread position:
               1-409
               

               Cow position:
               chr18:33064087-33063679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 140
               

               Conread position:
               1-409
               

               Cow position:
               chr18:42827499-42827907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-411
               

               Cow position:
               chr18:51765735-51765325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               205, 223
               

               Conread position:
               1-414
               

               Cow position:
               chr18:41197670-41198083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               260
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr18:42675226-42674813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 302
               

               Conread position:
               1-414
               

               Cow position:
               chr18:42792235-42792648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr18:42985465-42985052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               146, 115
               

               Conread position:
               1-414
               

               Cow position:
               chr18:44184875-44184462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               378, 370
               

               Conread position:
               1-414
               

               Cow position:
               chr18:44253880-44253467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               218, 225
               

               Conread position:
               1-414
               

               Cow position:
               chr18:50083797-50084210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               253
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               39, 45
               

               Conread position:
               1-414
               

               Cow position:
               chr18:51812705-51812292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               259
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               274, 291
               

               Conread position:
               1-414
               

               Cow position:
               chr18:51969520-51969922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr18:52427812-52428225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               298, 290
               

               Conread position:
               1-414
               

               Cow position:
               chr18:52428148-52428561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               215, 201
               

               Conread position:
               1-414
               

               Cow position:
               chr18:52428400-52428813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               34, 41
               

               Conread position:
               1-414
               

               Cow position:
               chr18:52433161-52433574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr18:52433329-52433742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               215, 201
               

               Conread position:
               1-414
               

               Cow position:
               chr18:52433581-52433994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               chr18:52447371-52447784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-415
               

               Cow position:
               chr18:51789546-51789132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               218, 225
               

               Conread position:
               1-415
               

               Cow position:
               chr18:51812789-51812375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 225
               

               Conread position:
               2-276
               

               Cow position:
               chr18:53635276-53635003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               2-285
               

               Cow position:
               chr18:43022303-43022020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               117, 136
               

               Conread position:
               2-326
               

               Cow position:
               chr18:44240525-44240849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               127, 139
               

               Conread position:
               2-328
               

               Cow position:
               chr18:56329167-56328841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               151, 132
               

               Conread position:
               2-334
               

               Cow position:
               chr18:42744117-42743785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-335
               

               Cow position:
               chr18:41198427-41198760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-335
               

               Cow position:
               chr18:44184286-44183953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               128, 139
               

               Conread position:
               2-336
               

               Cow position:
               chr18:1418266-1418600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               151, 141
               

               Conread position:
               2-339
               

               Cow position:
               chr18:55523992-55524329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               32, 46
               

               Conread position:
               2-345
               

               Cow position:
               chr18:52428653-52428996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               133, 139
               

               Conread position:
               2-345
               

               Cow position:
               chr18:52433834-52434177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               133, 139
               

               Conread position:
               2-352
               

               Cow position:
               chr18:43174840-43174490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               301, 307
               

               Conread position:
               2-357
               

               Cow position:
               chr18:42693616-42693261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               151, 147
               

               Conread position:
               2-360
               

               Cow position:
               chr18:49032530-49032172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-360
               

               Cow position:
               chr18:54979908-54980266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-360
               

               Cow position:
               chr18:56494192-56494547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               223, 216
               

               Conread position:
               2-361
               

               Cow position:
               chr18:44154019-44153667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               307, 39
               

               Conread position:
               2-361
               

               Cow position:
               chr18:53525872-53526231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               118, 136
               

               Conread position:
               2-361
               

               Cow position:
               chr18:56316061-56316420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               231
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               307, 300
               

               Conread position:
               2-365
               

               Cow position:
               chr18:51368086-51367724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               54, 45
               

               Conread position:
               2-366
               

               Cow position:
               chr18:33064674-33064310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               43, 56
               

               Conread position:
               2-366
               

               Cow position:
               chr18:40306601-40306965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               2-366
               

               Cow position:
               chr18:41197587-41197950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               355, 0
               

               Conread position:
               2-367
               

               Cow position:
               chr18:50246425-50246790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 46
               

               Conread position:
               2-368
               

               Cow position:
               chr18:52012347-52011981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               2-368
               

               Cow position:
               chr18:53636032-53635666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-368
               

               Cow position:
               chr18:56128133-56128499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-369
               

               Cow position:
               chr18:42984876-42984509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               127, 139
               

               Conread position:
               2-369
               

               Cow position:
               chr18:43023059-43022692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               133, 139
               

               Conread position:
               2-369
               

               Cow position:
               chr18:44239769-44240136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               209, 202
               

               Conread position:
               2-369
               

               Cow position:
               chr18:56128469-56128836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               221, 215
               

               Conread position:
               2-370
               

               Cow position:
               chr18:44253220-44252860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               127, 110
               

               Conread position:
               2-370
               

               Cow position:
               chr18:53635696-53635328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               223, 216
               

               Conread position:
               2-371
               

               Cow position:
               chr18:43048716-43048347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               55, 45
               

               Conread position:
               2-378
               

               Cow position:
               chr18:56494108-56494484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-384
               

               Cow position:
               chr18:41948664-41948284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               127, 138
               

               Conread position:
               2-386
               

               Cow position:
               chr18:41198175-41198559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-386
               

               Cow position:
               chr18:53610371-53609987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               31, 40
               

               Conread position:
               2-387
               

               Cow position:
               chr18:53526040-53526425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 45
               

               Conread position:
               2-396
               

               Cow position:
               chr18:50271641-50272035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               370, 382
               

               Conread position:
               2-400
               

               Cow position:
               chr18:42791144-42791542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               221, 210
               

               Conread position:
               2-400
               

               Cow position:
               chr18:50059443-50059045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               241
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               276, 294
               

               Conread position:
               2-405
               

               Cow position:
               chr18:33064002-33063599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               199, 224
               

               Conread position:
               2-405
               

               Cow position:
               chr18:33092926-33092523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               48, 56
               

               Conread position:
               2-405
               

               Cow position:
               chr18:49022910-49023313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               18, 11
               

               Conread position:
               2-405
               

               Cow position:
               chr18:54980076-54980479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               2-406
               

               Cow position:
               chr18:14453276-14452872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               2-406
               

               Cow position:
               chr18:42674805-42674401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               307, 300
               

               Conread position:
               2-406
               

               Cow position:
               chr18:43093238-43092834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 33
               

               Conread position:
               2-406
               

               Cow position:
               chr18:44240441-44240845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               127, 136
               

               Conread position:
               2-409
               

               Cow position:
               chr18:49032446-49032039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               104, 112
               

               Conread position:
               2-409
               

               Cow position:
               chr18:51400796-51401203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 211
               

               Conread position:
               2-410
               

               Cow position:
               chr18:51765902-51765494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               49, 56
               

               Conread position:
               2-410
               

               Cow position:
               chr18:52428485-52428893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               33, 40
               

               Conread position:
               2-410
               

               Cow position:
               chr18:52428569-52428977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-410
               

               Cow position:
               chr18:52433666-52434074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-410
               

               Cow position:
               chr18:52433750-52434158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-410
               

               Cow position:
               chr18:53559938-53560346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               2-411
               

               Cow position:
               chr18:41948748-41948339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               258
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               49, 56
               

               Conread position:
               2-411
               

               Cow position:
               chr18:42837504-42837095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               128, 139
               

               Conread position:
               2-411
               

               Cow position:
               chr18:42837756-42837347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-411
               

               Cow position:
               chr18:43174924-43174515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               2-411
               

               Cow position:
               chr18:43175260-43174851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               259
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               387, 381
               

               Conread position:
               2-411
               

               Cow position:
               chr18:52428233-52428642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               131, 114
               

               Conread position:
               2-411
               

               Cow position:
               chr18:52433414-52433823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               131, 114
               

               Conread position:
               2-411
               

               Cow position:
               chr18:52447876-52448285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-411
               

               Cow position:
               chr18:53586567-53586158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               46, 24
               

               Conread position:
               2-411
               

               Cow position:
               chr18:56329251-56328842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-412
               

               Cow position:
               chr18:44154442-44154029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               2-412
               

               Cow position:
               chr18:44184706-44184296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               270
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               46, 24
               

               Conread position:
               2-413
               

               Cow position:
               chr18:53586903-53586492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               246
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:33064170-33063758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               272
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               55, 46
               

               Conread position:
               2-414
               

               Cow position:
               chr18:33064254-33063842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 39
               

               Conread position:
               2-414
               

               Cow position:
               chr18:33064758-33064346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               268
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               55, 39
               

               Conread position:
               2-414
               

               Cow position:
               chr18:40075035-40075447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               51, 42
               

               Conread position:
               2-414
               

               Cow position:
               chr18:40086168-40085764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               128, 110
               

               Conread position:
               2-414
               

               Cow position:
               chr18:40086334-40085932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               212, 138
               

               Conread position:
               2-414
               

               Cow position:
               chr18:40086502-40086092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               258
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               291, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:40324452-40324040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               254
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               33, 39
               

               Conread position:
               2-414
               

               Cow position:
               chr18:40324536-40324124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               54, 48
               

               Conread position:
               2-414
               

               Cow position:
               chr18:40324788-40324376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               128, 138
               

               Conread position:
               2-414
               

               Cow position:
               chr18:41198007-41198419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               127, 144
               

               Conread position:
               2-414
               

               Cow position:
               chr18:41198259-41198671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               2-414
               

               Cow position:
               chr18:41198343-41198755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:41948916-41948504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 138
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42724828-42724416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               219, 200
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42744201-42743789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42744453-42744041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 142
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42744621-42744209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 39
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42744705-42744293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               266
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               133, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42790976-42791388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               118, 110
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42791732-42792144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42791900-42792312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               267, 261
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42791984-42792396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42837588-42837176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               208, 202
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42837672-42837260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 307
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42837840-42837428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42959951-42959548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               105, 124
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42984960-42984548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               256
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42985128-42984716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               265
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               33, 41
               

               Conread position:
               2-414
               

               Cow position:
               chr18:42985296-42984884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               43, 39
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43022471-43022059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               264
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               31, 21
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43022555-43022143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43022891-43022479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               266
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               37, 32
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43022975-43022563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               115, 125
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43093406-43092994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               55, 43
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43120059-43119647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               246
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               212, 193
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43175008-43174596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               259
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               132, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr18:43175176-43174764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               120, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44184370-44183958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               121, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44184538-44184126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               35, 46
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44184622-44184210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44239853-44240265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               55, 49
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44240273-44240685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               265
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               130, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44240357-44240769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44397923-44397511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               368, 384
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44398007-44397595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               256
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44398091-44397679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               257
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44398259-44397847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               261
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:44398343-44397931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:49032782-49032370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               30, 24
               

               Conread position:
               2-414
               

               Cow position:
               chr18:49032866-49032454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               202, 189
               

               Conread position:
               2-414
               

               Cow position:
               chr18:50083714-50084126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               205, 212
               

               Conread position:
               2-414
               

               Cow position:
               chr18:50848515-50848927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               2-414
               

               Cow position:
               chr18:51400460-51400872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 222
               

               Conread position:
               2-414
               

               Cow position:
               chr18:51789293-51788881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               395, 403
               

               Conread position:
               2-414
               

               Cow position:
               chr18:51812536-51812124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:51839297-51838885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               265
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               149, 142
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52012011-52011599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               262
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52012430-52012019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               222, 21
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52428065-52428477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               270
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               46, 34
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52433246-52433658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               268
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52447120-52447532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               259
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               139, 132
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52447456-52447868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               261
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52447708-52448120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52447792-52448204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               133, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr18:52447960-52448373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               269
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               133, 139
               

               Conread position:
               2-414
               

               Cow position:
               chr18:53586399-53585987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               52, 42
               

               Conread position:
               2-414
               

               Cow position:
               chr18:53610287-53609875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               2-414
               

               Cow position:
               chr18:54967716-54968126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               35, 44
               

               Conread position:
               2-414
               

               Cow position:
               chr18:54979824-54980236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               50, 43
               

               Conread position:
               2-414
               

               Cow position:
               chr18:54993420-54993832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               34, 40
               

               Conread position:
               2-414
               

               Cow position:
               chr18:55497610-55497198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               222, 211
               

               Conread position:
               2-414
               

               Cow position:
               chr18:56247549-56247145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               120, 52
               

               Conread position:
               2-414
               

               Cow position:
               chr18:56329755-56329343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               307, 301
               

               Conread position:
               2-414
               

               Cow position:
               chr18:56494024-56494436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-419
               

               Cow position:
               chr18:52447624-52448040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               265
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               414, 0
               

               Conread position:
               2-419
               

               Cow position:
               chr18:55066846-55066430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               223, 209
               

               Conread position:
               2-427
               

               Cow position:
               chr18:51789461-51789036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               30, 44
               

               Conread position:
               2-427
               

               Cow position:
               chr18:55018144-55018569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               211, 203
               

               Conread position:
               3-385
               

               Cow position:
               chr18:14454007-14453625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               249
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               3-411
               

               Cow position:
               chr18:43093897-43093501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               255
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               198, 171
               

               Conread position:
               3-411
               

               Cow position:
               chr18:51751986-51751578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               222, 210
               

               Conread position:
               3-414
               

               Cow position:
               chr18:42791313-42791724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               378, 382
               

               Conread position:
               3-414
               

               Cow position:
               chr18:42959866-42959464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               252
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               3-414
               

               Cow position:
               chr18:42960034-42959632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               269
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               54, 48
               

               Conread position:
               3-414
               

               Cow position:
               chr18:42960286-42959875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               269
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               29, 38
               

               Conread position:
               3-434
               

               Cow position:
               chr18:40075288-40075719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               54, 41
               

               Conread position:
               4-397
               

               Cow position:
               chr18:43167806-43168199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               149, 140
               

               Conread position:
               4-414
               

               Cow position:
               chr18:33093093-33092682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               5, 55
               

               Conread position:
               4-414
               

               Cow position:
               chr18:50022306-50021892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               5, 294
               

               Conread position:
               5-411
               

               Cow position:
               chr18:51874157-51874561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               214, 51
               

               Conread position:
               6-275
               

               Cow position:
               chr18:53609947-53609679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               48, 41
               

               Conread position:
               6-361
               

               Cow position:
               chr18:53635356-53635002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               6-361
               

               Cow position:
               chr18:56128809-56129163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 61
               

               Conread position:
               6-362
               

               Cow position:
               chr18:52011923-52011567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               121, 135
               

               Conread position:
               6-380
               

               Cow position:
               chr18:51789037-51788664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               51, 41
               

               Conread position:
               6-399
               

               Cow position:
               chr18:52012091-52011698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               29, 35
               

               Conread position:
               6-411
               

               Cow position:
               chr18:51789373-51788968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 52
               

               Conread position:
               6-414
               

               Cow position:
               chr18:33064334-33063926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               51, 42
               

               Conread position:
               6-414
               

               Cow position:
               chr18:33093006-33092598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               51, 42
               

               Conread position:
               6-414
               

               Cow position:
               chr18:49032946-49032538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               194, 182
               

               Conread position:
               6-414
               

               Cow position:
               chr18:49033282-49032874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               24, 17
               

               Conread position:
               6-414
               

               Cow position:
               chr18:50281858-50282266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               272, 290
               

               Conread position:
               6-414
               

               Cow position:
               chr18:51400380-51400788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-414
               

               Cow position:
               chr18:51400716-51401124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 38
               

               Conread position:
               6-414
               

               Cow position:
               chr18:51765394-51764986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 52
               

               Conread position:
               6-414
               

               Cow position:
               chr18:52012259-52011851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               257
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               6-414
               

               Cow position:
               chr18:56316317-56316725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               110, 142
               

               Conread position:
               6-414
               

               Cow position:
               chr18:56330003-56329595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               31, 51
               

               Conread position:
               6-427
               

               Cow position:
               chr18:54979996-54980417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               48, 44
               

               Conread position:
               7-387
               

               Cow position:
               chr18:53587068-53586686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               15, 198
               

               Conread position:
               7-406
               

               Cow position:
               chr18:50295373-50295772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-411
               

               Cow position:
               chr18:50281689-50282095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               250
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               11, 136
               

               Conread position:
               7-411
               

               Cow position:
               chr18:53610116-53609710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               15, 39
               

               Conread position:
               7-411
               

               Cow position:
               chr18:53635441-53635035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               7-411
               

               Cow position:
               chr18:56128724-56129130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               8, 40
               

               Conread position:
               7-414
               

               Cow position:
               chr18:42792323-42792732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               7-414
               

               Cow position:
               chr18:42960198-42959791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               25, 34
               

               Conread position:
               7-414
               

               Cow position:
               chr18:50848938-50849347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               7-414
               

               Cow position:
               chr18:56128388-56128797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               11, 39
               

               Conread position:
               7-419
               

               Cow position:
               chr18:42724571-42724160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               58, 63
               

               Conread position:
               8-255
               

               Cow position:
               chr18:51400970-51401217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               49, 39
               

               Conread position:
               8-335
               

               Cow position:
               chr18:42792578-42792905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-368
               

               Cow position:
               chr18:50246347-50246707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               112, 123
               

               Conread position:
               8-379
               

               Cow position:
               chr18:51812278-51811907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-394
               

               Cow position:
               chr18:50849109-50849495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               270, 274
               

               Conread position:
               8-397
               

               Cow position:
               chr18:52446958-52447347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               255
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               48, 43
               

               Conread position:
               8-400
               

               Cow position:
               chr18:50246095-50246487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               109, 130
               

               Conread position:
               8-405
               

               Cow position:
               chr18:50246261-50246660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               10, 208
               

               Conread position:
               8-405
               

               Cow position:
               chr18:50271479-50271876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               114, 130
               

               Conread position:
               8-412
               

               Cow position:
               chr18:44253789-44253385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               255
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               127, 133
               

               Conread position:
               8-413
               

               Cow position:
               chr18:43022717-43022312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               274, 265
               

               Conread position:
               8-414
               

               Cow position:
               chr18:40306521-40306929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               7, 38
               

               Conread position:
               8-414
               

               Cow position:
               chr18:41948994-41948588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               121, 133
               

               Conread position:
               8-414
               

               Cow position:
               chr18:41949078-41948672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               263
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               121, 132
               

               Conread position:
               8-414
               

               Cow position:
               chr18:42744363-42743957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               262
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               202, 196
               

               Conread position:
               8-414
               

               Cow position:
               chr18:42744531-42744125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 33
               

               Conread position:
               8-414
               

               Cow position:
               chr18:42827422-42827828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               27, 50
               

               Conread position:
               8-414
               

               Cow position:
               chr18:43175590-43175184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               202, 182
               

               Conread position:
               8-414
               

               Cow position:
               chr18:50848269-50848675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               210, 216
               

               Conread position:
               8-414
               

               Cow position:
               chr18:51752233-51751827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               262
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               216, 205
               

               Conread position:
               8-414
               

               Cow position:
               chr18:51839375-51838969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 215
               

               Conread position:
               8-414
               

               Cow position:
               chr18:52433084-52433490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               255
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               8-419
               

               Cow position:
               chr18:33064836-33064426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               266
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               130, 112
               

               Conread position:
               8-427
               

               Cow position:
               chr18:51789791-51789372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               269
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               114, 133
               

               Conread position:
               9-379
               

               Cow position:
               chr18:56329414-56329042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               7, 43
               

               Conread position:
               9-386
               

               Cow position:
               chr18:56329834-56329455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               7, 43
               

               Conread position:
               9-411
               

               Cow position:
               chr18:50083635-50084039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               16, 37
               

               Conread position:
               9-414
               

               Cow position:
               chr18:56128306-56128713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               13, 134
               

               Conread position:
               10-411
               

               Cow position:
               chr18:42694196-42693795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               10-414
               

               Cow position:
               chr18:42724486-42724080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               254
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               11-384
               

               Cow position:
               chr18:56316491-56316863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               46, 6
               

               Conread position:
               12-369
               

               Cow position:
               chr18:42694026-42693669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               23, 30
               

               Conread position:
               12-414
               

               Cow position:
               chr18:51789869-51789469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               163, 8
               

               Conread position:
               13-316
               

               Cow position:
               chr18:50295547-50295850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               188, 211
               

               Conread position:
               13-359
               

               Cow position:
               chr18:53610024-53609679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 29
               

               Conread position:
               14-333
               

               Cow position:
               chr18:33063906-33063587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               21, 28
               

               Conread position:
               14-336
               

               Cow position:
               chr18:50083306-50083628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               14-336
               

               Cow position:
               chr18:50271821-50272143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               14-344
               

               Cow position:
               chr18:51400892-51401222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               0, 0
               
14-357UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr18:54993516-54993859 (view  custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               125, 93
               
14-358UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:54980172-54980516 (view  custom track)

               
               
               
Alignm length: 347

               
               
               
Alignm identity: 213

               
               
               
Alignm E-value: 2e-24

               
               
               
Alignm gaps (pig, cow): 43, 31
14-360UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr18:50271737-50272083 (view  custom track)

               
               
               
Alignm length: 347

               
               
               
Alignm identity: 207

               
               
               
Alignm E-value: 1e-22

               
               
               
Alignm gaps (pig, cow): 0, 0

               
               
               Conread position:14-361
               
               
               Cow position:chr18:49033358-49033011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:14-366
               
               
               Cow position:chr18:49022838-49023190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:14-366
               
               
               Cow position:chr18:51367571-51367219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):210, 199

               
               
               Conread position:14-367
               
               
               Cow position:chr18:50083894-50084247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-367
               
               
               Cow position:chr18:56128061-56128414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-367
               
               
               Cow position:chr18:56316157-56316510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:14-368
               
               
               Cow position:chr18:42791072-42791426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:14-368
               
               
               Cow position:chr18:42791240-42791594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):267, 249

               
               
               Conread position:14-369
               
               
               Cow position:chr18:42960107-42959752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):93, 126

               
               
               Conread position:14-370
               
               
               Cow position:chr18:51839201-51838845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):289, 294

               
               
               Conread position:14-379
               
               
               Cow position:chr18:50281950-50282315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):180, 212

               
               
               Conread position:14-385
               
               
               Cow position:chr18:53610191-53609820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:14-387
               
               
               Cow position:chr18:40306277-40306650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:14-387
               
               
               Cow position:chr18:53635516-53635143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):211, 204

               
               
               Conread position:14-393
               
               
               Cow position:chr18:53498419-53498795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):189, 21

               
               
               Conread position:14-397
               
               
               Cow position:chr18:42693772-42693389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):139, 129

               
               
               Conread position:14-397
               
               
               Cow position:chr18:42792416-42792799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-397
               
               
               Cow position:chr18:49033106-49032723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:14-397
               
               
               Cow position:chr18:50246185-50246568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:14-397
               
               
               Cow position:chr18:50849031-50849414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:14-397
               
               
               Cow position:chr18:56329491-56329108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):43, 37

               
               
               Conread position:14-399
               
               
               Cow position:chr18:50030877-50030487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 141

               
               
               Conread position:14-400
               
               
               Cow position:chr18:50059599-50059213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 82

               
               
               Conread position:14-400
               
               
               Cow position:chr18:50098999-50099385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):358, 370

               
               
               Conread position:14-400
               
               
               Cow position:chr18:50246017-50246403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:14-405
               
               
               Cow position:chr18:54967896-54968285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:14-410
               
               
               Cow position:chr18:40324692-40324296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):165, 170

               
               
               Conread position:14-410
               
               
               Cow position:chr18:51368326-51367930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):113, 102

               
               
               Conread position:14-410
               
               
               Cow position:chr18:55067002-55066606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:14-411
               
               
               Cow position:chr18:51812608-51812211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:14-411
               
               
               Cow position:chr18:51839537-51839140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:14-413
               
               
               Cow position:chr18:41949324-41948925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):210, 203

               
               
               Conread position:14-414
               
               
               Cow position:chr18:40324860-40324460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):121, 127

               
               
               Conread position:14-414
               
               
               Cow position:chr18:41198103-41198503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):210, 203

               
               
               Conread position:14-414
               
               
               Cow position:chr18:41949156-41948756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:14-414
               
               
               Cow position:chr18:41949240-41948840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:42674877-42674477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):115, 127

               
               
               Conread position:14-414
               
               
               Cow position:chr18:42675297-42674897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):40, 36

               
               
               Conread position:14-414
               
               
               Cow position:chr18:42675381-42674981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:14-414
               
               
               Cow position:chr18:42693688-42693288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:42724396-42723996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 127

               
               
               Conread position:14-414
               
               
               Cow position:chr18:42744273-42743873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):116, 126

               
               
               Conread position:14-414
               
               
               Cow position:chr18:42791408-42791808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:14-414
               
               
               Cow position:chr18:43093310-43092910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:43093646-43093246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:43175500-43175100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):108, 127

               
               
               Conread position:14-414
               
               
               Cow position:chr18:44154259-44153866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):211, 204

               
               
               Conread position:14-414
               
               
               Cow position:chr18:44398415-44398015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:49032686-49032286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:14-414
               
               
               Cow position:chr18:49033190-49032790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):131, 138

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50059011-50058611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50059095-50058695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):212, 198

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50083474-50083874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):112, 102

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50083558-50083958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50099335-50099735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50099503-50099903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 139

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50099839-50100239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 102

               
               
               Conread position:14-414
               
               
               Cow position:chr18:50848863-50849263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 116

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51400556-51400956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51752059-51751659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51752143-51751743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):127, 116

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51752311-51751911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51765638-51765238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):295, 281

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51766058-51765658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51812440-51812040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 204

               
               
               Conread position:14-414
               
               
               Cow position:chr18:51812860-51812460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:14-414
               
               
               Cow position:chr18:53525716-53526116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:14-414
               
               
               Cow position:chr18:53635600-53635200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:14-414
               
               
               Cow position:chr18:54979584-54979984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):266, 271

               
               
               Conread position:14-414
               
               
               Cow position:chr18:55017904-55018304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:14-414
               
               
               Cow position:chr18:55018324-55018724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:14-414
               
               
               Cow position:chr18:56128565-56128965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:14-414
               
               
               Cow position:chr18:56330163-56329763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):195, 212

               
               
               Conread position:14-418
               
               
               Cow position:chr18:43093478-43093074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 140

               
               
               Conread position:14-426
               
               
               Cow position:chr18:50848611-50849023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:14-426
               
               
               Cow position:chr18:51789197-51788785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 202

               
               
               Conread position:14-427
               
               
               Cow position:chr18:44240201-44240614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:14-427
               
               
               Cow position:chr18:51368242-51367829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):127, 120

               
               
               Conread position:14-427
               
               
               Cow position:chr18:56128649-56129062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):210, 203

               
               
               Conread position:15-276
               
               
               Cow position:chr18:56247788-56247527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-414
               
               
               Cow position:chr18:44154342-44153944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):360, 0

               
               
               Conread position:15-414
               
               
               Cow position:chr18:49033021-49032622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:15-414
               
               
               Cow position:chr18:50058842-50058445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):210, 197

               
               
               Conread position:15-414
               
               
               Cow position:chr18:51789700-51789301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:15-414
               
               
               Cow position:chr18:56247620-56247229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):116, 95

               
               
               Conread position:16-367
               
               
               Cow position:chr18:50049113-50048762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 30

               
               
               Conread position:16-379
               
               
               Cow position:chr18:14453910-14453547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:16-414
               
               
               Cow position:chr18:44398161-44397763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:16-427
               
               
               Cow position:chr18:51400306-51400717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:17-285
               
               
               Cow position:chr18:40324185-40323918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):193, 186

               
               
               Conread position:17-333
               
               
               Cow position:chr18:42827599-42827915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 33

               
               
               Conread position:17-357
               
               
               Cow position:chr18:43093559-43093219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-360
               
               
               Cow position:chr18:44253289-44252947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:17-368
               
               
               Cow position:chr18:50022463-50022109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 120

               
               
               Conread position:17-374
               
               
               Cow position:chr18:50083393-50083750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):259, 237

               
               
               Conread position:17-411
               
               
               Cow position:chr18:50048944-50048550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:17-411
               
               
               Cow position:chr18:51765971-51765577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):201, 209

               
               
               Conread position:17-414
               
               
               Cow position:chr18:40324353-40323956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):124, 99

               
               
               Conread position:17-414
               
               
               Cow position:chr18:42791495-42791892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 71

               
               
               Conread position:17-414
               
               
               Cow position:chr18:42792167-42792564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr18:42837909-42837512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):118, 124

               
               
               Conread position:17-414
               
               
               Cow position:chr18:43120128-43119731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):111, 95

               
               
               Conread position:17-414
               
               
               Cow position:chr18:43120296-43119899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):261, 279

               
               
               Conread position:17-414
               
               
               Cow position:chr18:44239952-44240349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:17-414
               
               
               Cow position:chr18:50022376-50021976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:17-414
               
               
               Cow position:chr18:51789614-51789217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 209

               
               
               Conread position:17-414
               
               
               Cow position:chr18:51969368-51969763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr18:51969618-51970006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr18:52427660-52428057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):288, 279

               
               
               Conread position:17-414
               
               
               Cow position:chr18:52433009-52433406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):288, 279

               
               
               Conread position:17-414
               
               
               Cow position:chr18:55523503-55523900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):98, 116

               
               
               Conread position:17-414
               
               
               Cow position:chr18:56329656-56329259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-419
               
               
               Cow position:chr18:42791831-42792232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:17-426
               
               
               Cow position:chr18:50295299-50295708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:17-427
               
               
               Cow position:chr18:49032599-49032189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):361, 366

               
               
               Conread position:18-426
               
               
               Cow position:chr18:52447220-52447628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:29-385
               
               
               Cow position:chr18:51367640-51367284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:29-414
               
               
               Cow position:chr18:41949395-41949008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 276

               
               
               Conread position:38-414
               
               
               Cow position:chr18:52012477-52012103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:39-414
               
               
               Cow position:chr18:51400245-51400620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 102

               
               
               Conread position:41-355
               
               
               Cow position:chr18:55442317-55442631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 102

               
               
               Conread position:41-383
               
               
               Cow position:chr18:50059656-50059312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):331, 0

               
               
               Conread position:41-386
               
               
               Cow position:chr18:51874359-51874704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:43-414
               
               
               Cow position:chr18:54993377-54993748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):256, 236

               
               
               Conread position:49-414
               
               
               Cow position:chr18:53509300-53509662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):325, 11

               
               
               Conread position:53-326
               
               
               Cow position:chr18:51765179-51764906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):172, 150

               
               
               Conread position:55-323
               
               
               Cow position:chr18:43168277-43168545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):169, 157

               
               
               Conread position:55-414
               
               
               Cow position:chr18:51368537-51368178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-286
               
               
               Cow position:chr18:51969816-51970046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-369
               
               
               Cow position:chr18:40324230-40323918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 40

               
               
               Conread position:56-370
               
               
               Cow position:chr18:55018030-55018344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:56-375
               
               
               Cow position:chr18:42724270-42723951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:56-379
               
               
               Cow position:chr18:42959738-42959415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):253, 247

               
               
               Conread position:56-379
               
               
               Cow position:chr18:56128271-56128594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 96

               
               
               Conread position:56-400
               
               
               Cow position:chr18:43119921-43119577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:56-412
               
               
               Cow position:chr18:40074921-40075277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):209, 192

               
               
               Conread position:56-414
               
               
               Cow position:chr18:1418068-1418426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):107, 101

               
               
               Conread position:56-414
               
               
               Cow position:chr18:1418236-1418594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):253, 247

               
               
               Conread position:56-414
               
               
               Cow position:chr18:40086532-40086176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):60, 74

               
               
               Conread position:56-414
               
               
               Cow position:chr18:41197557-41197915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr18:41197977-41198335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):88, 97

               
               
               Conread position:56-414
               
               
               Cow position:chr18:42790946-42791304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):147, 139

               
               
               Conread position:56-414
               
               
               Cow position:chr18:42791702-42792060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 124

               
               
               Conread position:56-414
               
               
               Cow position:chr18:43175290-43174932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr18:44254073-44253719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):119, 137

               
               
               Conread position:56-414
               
               
               Cow position:chr18:50099629-50099987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:56-414
               
               
               Cow position:chr18:50271611-50271969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr18:50848485-50848843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:56-414
               
               
               Cow position:chr18:50848737-50849095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):253, 246

               
               
               Conread position:56-414
               
               
               Cow position:chr18:51368452-51368094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):222, 229

               
               
               Conread position:56-414
               
               
               Cow position:chr18:51812986-51812628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr18:51874045-51874396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr18:51969173-51969513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr18:53635810-53635452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):169, 162

               
               
               Conread position:56-414
               
               
               Cow position:chr18:54993222-54993580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 84

               
               
               Conread position:56-414
               
               
               Cow position:chr18:55523458-55523816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:56-419
               
               
               Cow position:chr18:42675087-42674725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):159, 148

               
               
               Conread position:57-369
               
               
               Cow position:chr18:42985577-42985265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):227, 249

               
               
               Conread position:58-414
               
               
               Cow position:chr18:42960315-42959959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-419
               
               
               Cow position:chr18:53509224-53509582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):328, 10

               
               
               Conread position:60-414
               
               
               Cow position:chr18:44398453-44398099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-411
               
               
               Cow position:chr18:51752346-51751998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:67-414
               
               
               Cow position:chr18:51765417-51765070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-322
               
               
               Cow position:chr18:42724174-42723920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:68-355
               
               
               Cow position:chr18:51970334-51970615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):229, 45

               
               
               Conread position:68-360
               
               
               Cow position:chr18:51766087-51765796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):210, 9

               
               
               Conread position:68-362
               
               
               Cow position:chr18:42959642-42959350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:68-378
               
               
               Cow position:chr18:51969018-51969313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:68-378
               
               
               Cow position:chr18:56248165-56247856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):259, 0

               
               
               Conread position:68-397
               
               
               Cow position:chr18:50058873-50058544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:68-414
               
               
               Cow position:chr18:43168038-43168384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:68-414
               
               
               Cow position:chr18:44154460-44154111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:68-414
               
               
               Cow position:chr18:44239751-44240097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:68-414
               
               
               Cow position:chr18:51368356-51368010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 48

               
               
               Conread position:68-414
               
               
               Cow position:chr18:51765500-51765154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-414
               
               
               Cow position:chr18:55066864-55066518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-417
               
               
               Cow position:chr18:44253322-44252974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:68-419
               
               
               Cow position:chr18:43048734-43048383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-406
               
               
               Cow position:chr18:49022725-49023062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:69-414
               
               
               Cow position:chr18:42744722-42744377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):141, 134

               
               
               Conread position:71-414
               
               
               Cow position:chr18:43093673-43093330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 70

               
               
               Conread position:74-359
               
               
               Cow position:chr18:14454020-14453735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 67

               
               
               Conread position:74-414
               
               
               Cow position:chr18:14453288-14452948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):312, 319

               
               
               Conread position:74-414
               
               
               Cow position:chr18:44184886-44184546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-414
               
               
               Cow position:chr18:51969341-51969679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):251, 0

               
               
               Conread position:76-378
               
               
               Cow position:chr18:56330185-56329883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-409
               
               
               Cow position:chr18:40324882-40324549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:76-414
               
               
               Cow position:chr18:42837934-42837596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):311, 317

               
               
               Conread position:76-414
               
               
               Cow position:chr18:50098977-50099315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):299, 307

               
               
               Conread position:77-414
               
               
               Cow position:chr18:43023068-43022731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 63

               
               
               Conread position:78-414
               
               
               Cow position:chr18:44253887-44253551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-414
               
               
               Cow position:chr18:49033378-49033042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:78-414
               
               
               Cow position:chr18:52427637-52427973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-414
               
               
               Cow position:chr18:52432986-52433322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-414
               
               
               Cow position:chr18:33093101-33092766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):146, 135

               
               
               Conread position:81-411
               
               
               Cow position:chr18:56247808-56247479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:90-409
               
               
               Cow position:chr18:43175592-43175273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-369
               
               
               Cow position:chr18:42675388-42675110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-378
               
               
               Cow position:chr18:49021673-49021955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):128, 114

               
               
               Conread position:98-365
               
               
               Cow position:chr18:55523332-55523599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:111-410
               
               
               Cow position:chr18:51367643-51367343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:138-417
               
               
               Cow position:chr18:51874043-51874315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:139-411
               
               
               Cow position:chr18:51969322-51969594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:139-414
               
               
               Cow position:chr18:50083347-50083622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:139-414
               
               
               Cow position:chr18:50281739-50282014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 62

               
               
               Conread position:140-411
               
               
               Cow position:chr18:51970322-51970591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):135, 57

               
               
               Conread position:146-414
               
               
               Cow position:chr18:49022718-49022986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):209, 204

               
               
               Conread position:150-414
               
               
               Cow position:chr18:55524056-55524320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:151-414
               
               
               Cow position:chr18:40074932-40075195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 52

               
               
               Conread position:152-387
               
               
               Cow position:chr18:53610473-53610238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-396
               
               
               Cow position:chr18:56248165-56247921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-414
               
               
               Cow position:chr18:50295266-50295528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):218, 233

               
               
               Conread position:154-419
               
               
               Cow position:chr18:50245989-50246253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):216, 229

               
               
               Conread position:156-406
               
               
               Cow position:chr18:52446938-52447188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):152, 146

               
               
               Conread position:162-414
               
               
               Cow position:chr18:43120319-43120067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 64

               
               
               Conread position:184-414
               
               
               Cow position:chr18:56247787-56247557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-414
               
               
               Cow position:chr18:55523335-55523564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:224-414
               
               
               Cow position:chr18:42985494-42985304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):163, 146

               
               
               Conread position:224-414
               
               
               Cow position:chr18:44184904-44184714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):167, 147

               
               
               Conread position:227-414
               
               
               Cow position:chr18:42985575-42985388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):82, 76

               
               
               Conread position:229-414
               
               
               Cow position:chr18:43048741-43048556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-419
               
               
               Cow position:chr18:53560081-53560270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 67

               
               
               Conread position:236-427
               
               
               Cow position:chr18:52012448-52012258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1-360
               
               
               Cow position:chr19:23649817-23650176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):224, 217

               
               
               Conread position:1-372
               
               
               Cow position:chr19:20677794-20678165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):206, 201

               
               
               Conread position:1-396
               
               
               Cow position:chr19:23614703-23615098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-410
               
               
               Cow position:chr19:23613863-23614272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):220, 215

               
               
               Conread position:1-414
               
               
               Cow position:chr19:14940335-14940748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):223, 216

               
               
               Conread position:1-419
               
               
               Cow position:chr19:23614535-23614952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):415, 0

               
               
               Conread position:1-428
               
               
               Cow position:chr19:14960296-14959871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):147, 131

               
               
               Conread position:2-331
               
               
               Cow position:chr19:14940756-14941085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-354
               
               
               Cow position:chr19:14940504-14940856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:2-366
               
               
               Cow position:chr19:20678299-20678663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:2-366
               
               
               Cow position:chr19:20678383-20678744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):127, 139

               
               
               Conread position:2-367
               
               
               Cow position:chr19:20677711-20678076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:2-373
               
               
               Cow position:chr19:23597377-23597748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):365, 338

               
               
               Conread position:2-394
               
               
               Cow position:chr19:23613612-23614004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-396
               
               
               Cow position:chr19:23614284-23614678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:2-410
               
               
               Cow position:chr19:23613444-23613852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 49

               
               
               Conread position:2-411
               
               
               Cow position:chr19:14960129-14959722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):188, 196

               
               
               Conread position:2-411
               
               
               Cow position:chr19:23597125-23597534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-413
               
               
               Cow position:chr19:23614032-23614443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 46

               
               
               Conread position:2-413
               
               
               Cow position:chr19:23650070-23650481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 136

               
               
               Conread position:2-414
               
               
               Cow position:chr19:14940252-14940664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr19:14940588-14941000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:269
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:2-414
               
               
               Cow position:chr19:14960379-14959969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr19:20635537-20635125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):235, 226

               
               
               Conread position:2-414
               
               
               Cow position:chr19:20635621-20635209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr19:20677459-20677871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):149, 142

               
               
               Conread position:2-414
               
               
               Cow position:chr19:20678047-20678459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):146, 141

               
               
               Conread position:2-414
               
               
               Cow position:chr19:20678215-20678627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr19:23597209-23597621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr19:23613528-23613940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:2-414
               
               
               Cow position:chr19:23613696-23614108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):49, 56

               
               
               Conread position:2-414
               
               
               Cow position:chr19:23614116-23614528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr19:23614200-23614612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:2-414
               
               
               Cow position:chr19:23614620-23615032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):208, 201

               
               
               Conread position:2-414
               
               
               Cow position:chr19:23649314-23649726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-418
               
               
               Cow position:chr19:14959230-14958820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:6-367
               
               
               Cow position:chr19:23649570-23649931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-398
               
               
               Cow position:chr19:43570040-43569652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):308, 296

               
               
               Conread position:7-414
               
               
               Cow position:chr19:23613953-23614360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 37

               
               
               Conread position:8-414
               
               
               Cow position:chr19:23596966-23597369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:13-410
               
               
               Cow position:chr19:14940011-14940408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 204

               
               
               Conread position:13-414
               
               
               Cow position:chr19:14940095-14940496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-369
               
               
               Cow position:chr19:14948359-14948004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:14-370
               
               
               Cow position:chr19:20677555-20677911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:14-376
               
               
               Cow position:chr19:23649746-23650108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):90, 97

               
               
               Conread position:14-378
               
               
               Cow position:chr19:14960199-14959837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):270, 53

               
               
               Conread position:14-396
               
               
               Cow position:chr19:23597053-23597435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):137, 129

               
               
               Conread position:14-396
               
               
               Cow position:chr19:23597305-23597687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-405
               
               
               Cow position:chr19:14940684-14941075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-411
               
               
               Cow position:chr19:20635441-20635044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):112, 102

               
               
               Conread position:14-414
               
               
               Cow position:chr19:14940180-14940580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:14-414
               
               
               Cow position:chr19:14940432-14940832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr19:23613792-23614192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr19:23649662-23650062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):339, 334

               
               
               Conread position:14-414
               
               
               Cow position:chr19:43570200-43569800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:14-418
               
               
               Cow position:chr19:14948442-14948039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):294, 37

               
               
               Conread position:15-426
               
               
               Cow position:chr19:23649495-23649906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 119

               
               
               Conread position:17-345
               
               
               Cow position:chr19:23650169-23650500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):314, 0

               
               
               Conread position:17-370
               
               
               Cow position:chr19:43570278-43569928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr19:23614467-23614864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr19:23650001-23650398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:19-366
               
               
               Cow position:chr19:20635688-20635341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 97

               
               
               Conread position:47-414
               
               
               Cow position:chr19:23614413-23614780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-335
               
               
               Cow position:chr19:14959575-14959308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:74-414
               
               
               Cow position:chr19:14939988-14940328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-414
               
               
               Cow position:chr19:14960387-14960053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:152-414
               
               
               Cow position:chr19:14959575-14959313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-414
               
               
               Cow position:chr19:20635639-20635377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:156-406
               
               
               Cow position:chr19:14960477-14960227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:160-409
               
               
               Cow position:chr19:23613350-23613599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:1-326
               
               
               Cow position:chr2:82800123-82800448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):277, 281

               
               
               Conread position:2-366
               
               
               Cow position:chr2:86465528-86465892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:2-410
               
               
               Cow position:chr2:82800040-82800448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:2-414
               
               
               Cow position:chr2:82799536-82799948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):222, 215

               
               
               Conread position:2-414
               
               
               Cow position:chr2:82799620-82800032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:2-414
               
               
               Cow position:chr2:82799872-82800284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-369
               
               
               Cow position:chr2:86465364-86465727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:6-414
               
               
               Cow position:chr2:82799792-82800200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 211

               
               
               Conread position:8-378
               
               
               Cow position:chr2:82799458-82799828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):216, 209

               
               
               Conread position:8-414
               
               
               Cow position:chr2:82799962-82800368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-368
               
               
               Cow position:chr2:48689526-48689166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:13-344
               
               
               Cow position:chr2:78755689-78756020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):132, 140

               
               
               Conread position:14-379
               
               
               Cow position:chr2:78754450-78754811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):105, 91

               
               
               Conread position:14-397
               
               
               Cow position:chr2:78754854-78755237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-400
               
               
               Cow position:chr2:78755190-78755574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):189, 147

               
               
               Conread position:14-411
               
               
               Cow position:chr2:78754938-78755335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):174, 193

               
               
               Conread position:14-414
               
               
               Cow position:chr2:82799716-82800116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:15-360
               
               
               Cow position:chr2:86465289-86465634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 95

               
               
               Conread position:17-396
               
               
               Cow position:chr2:78755025-78755403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):309, 0

               
               
               Conread position:57-335
               
               
               Cow position:chr2:78756070-78756346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:67-411
               
               
               Cow position:chr2:48689550-48689207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:68-367
               
               
               Cow position:chr2:86465174-86465473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:152-414
               
               
               Cow position:chr2:78754824-78755086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-426
               
               
               Cow position:chr2:82799467-82799708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-335
               
               
               Cow position:chr21:34222875-34222541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):312, 318

               
               
               Conread position:1-414
               
               
               Cow position:chr21:34223043-34222630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:2-378
               
               
               Cow position:chr21:12608752-12608376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):11, 15

               
               
               Conread position:2-386
               
               
               Cow position:chr21:34222958-34222574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:2-405
               
               
               Cow position:chr21:12608500-12608097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):151, 141

               
               
               Conread position:2-414
               
               
               Cow position:chr21:12608836-12608424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-368
               
               
               Cow position:chr21:12608412-12608050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):194, 219

               
               
               Conread position:6-399
               
               
               Cow position:chr21:12659350-12659743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-427
               
               
               Cow position:chr21:12659518-12659939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:7-397
               
               
               Cow position:chr21:12608915-12608525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):214, 205

               
               
               Conread position:7-397
               
               
               Cow position:chr21:12659183-12659573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:14-427
               
               
               Cow position:chr21:12658938-12659351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:14-427
               
               
               Cow position:chr21:12659274-12659687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:15-414
               
               
               Cow position:chr21:12608571-12608172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:16-400
               
               
               Cow position:chr21:12659612-12659996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-314
               
               
               Cow position:chr21:12608194-12607936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-378
               
               
               Cow position:chr21:34223072-34222750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 160

               
               
               Conread position:56-414
               
               
               Cow position:chr21:34223153-34222798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):260, 89

               
               
               Conread position:185-414
               
               
               Cow position:chr21:12608905-12608676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-333
               
               
               Cow position:chr22:12475624-12475292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):307, 295

               
               
               Conread position:1-368
               
               
               Cow position:chr22:14429907-14430274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):152, 142

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12399667-12399254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):190, 209

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12399751-12399338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12431227-12430814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12431899-12431486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12476044-12475631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12476128-12475715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12476296-12475883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12498963-12499376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12499131-12499544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr22:12499467-12499880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:1-414
               
               
               Cow position:chr22:46654022-46654435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:1-418
               
               
               Cow position:chr22:12418850-12418434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):406, 0

               
               
               Conread position:1-427
               
               
               Cow position:chr22:12498879-12499305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 216

               
               
               Conread position:2-252
               
               
               Cow position:chr22:11641204-11641454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:2-330
               
               
               Cow position:chr22:12430890-12430562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-331
               
               
               Cow position:chr22:12385236-12384907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:2-334
               
               
               Cow position:chr22:12458094-12457762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:2-360
               
               
               Cow position:chr22:12432318-12431960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 301

               
               
               Conread position:2-360
               
               
               Cow position:chr22:12432486-12432128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-366
               
               
               Cow position:chr22:12399414-12399050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):202, 193

               
               
               Conread position:2-367
               
               
               Cow position:chr22:12399246-12398881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 139

               
               
               Conread position:2-368
               
               
               Cow position:chr22:14468069-14468435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:2-369
               
               
               Cow position:chr22:14429992-14430359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):151, 141

               
               
               Conread position:2-371
               
               
               Cow position:chr22:14430160-14430529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:2-372
               
               
               Cow position:chr22:14467985-14468355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-383
               
               
               Cow position:chr22:14429824-14430203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 10

               
               
               Conread position:2-405
               
               
               Cow position:chr22:12458598-12458195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-406
               
               
               Cow position:chr22:12419017-12418613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 42

               
               
               Conread position:2-410
               
               
               Cow position:chr22:11701279-11701687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:2-414
               
               
               Cow position:chr22:11640616-11641028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):132, 139

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12385320-12384908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12399330-12398918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):117, 108

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12431478-12431066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12431646-12431234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12431730-12431318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):143, 149

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12431982-12431570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12432066-12431654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12458346-12457934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr22:12458514-12458102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-427
               
               
               Cow position:chr22:12476379-12475954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 216

               
               
               Conread position:3-373
               
               
               Cow position:chr22:14430077-14430447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:6-400
               
               
               Cow position:chr22:12458174-12457780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:6-414
               
               
               Cow position:chr22:11640956-11641364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:6-414
               
               
               Cow position:chr22:12475871-12475463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 135

               
               
               Conread position:6-414
               
               
               Cow position:chr22:12475955-12475547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-414
               
               
               Cow position:chr22:12499304-12499712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 134

               
               
               Conread position:7-333
               
               
               Cow position:chr22:11701368-11701694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:8-406
               
               
               Cow position:chr22:12431808-12431410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:8-410
               
               
               Cow position:chr22:14430502-14430904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:8-414
               
               
               Cow position:chr22:12385568-12385160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):98, 119

               
               
               Conread position:8-414
               
               
               Cow position:chr22:12399828-12399422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-414
               
               
               Cow position:chr22:12399906-12399506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:8-414
               
               
               Cow position:chr22:12431388-12430982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-414
               
               
               Cow position:chr22:11640711-11641112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:13-414
               
               
               Cow position:chr22:11666468-11666869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):105, 123

               
               
               Conread position:13-414
               
               
               Cow position:chr22:11701122-11701523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 112

               
               
               Conread position:14-333
               
               
               Cow position:chr22:12499648-12499967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):294, 282

               
               
               Conread position:14-336
               
               
               Cow position:chr22:11641132-11641454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):196, 201

               
               
               Conread position:14-339
               
               
               Cow position:chr22:12418753-12418428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-360
               
               
               Cow position:chr22:12431130-12430784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 193

               
               
               Conread position:14-369
               
               
               Cow position:chr22:12458250-12457895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):113, 98

               
               
               Conread position:14-397
               
               
               Cow position:chr22:11641048-11641431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 137

               
               
               Conread position:14-397
               
               
               Cow position:chr22:11666553-11666936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:14-400
               
               
               Cow position:chr22:12499564-12499950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:14-406
               
               
               Cow position:chr22:12458418-12458026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr22:11640796-11641196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr22:12418921-12418521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr22:12475695-12475295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:14-414
               
               
               Cow position:chr22:12475779-12475379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 111

               
               
               Conread position:14-414
               
               
               Cow position:chr22:12499228-12499628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:14-415
               
               
               Cow position:chr22:12385646-12385243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):181, 211

               
               
               Conread position:15-410
               
               
               Cow position:chr22:12419189-12418777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:15-414
               
               
               Cow position:chr22:46654204-46654603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:16-368
               
               
               Cow position:chr22:46654121-46654473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):106, 136

               
               
               Conread position:16-385
               
               
               Cow position:chr22:46654289-46654658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):106, 136

               
               
               Conread position:16-405
               
               
               Cow position:chr22:46654457-46654846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:16-414
               
               
               Cow position:chr22:12419272-12418857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:17-346
               
               
               Cow position:chr22:14430595-14430924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:17-414
               
               
               Cow position:chr22:12399567-12399170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:47-409
               
               
               Cow position:chr22:12430929-12430567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):142, 167

               
               
               Conread position:56-367
               
               
               Cow position:chr22:14430298-14430609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 87

               
               
               Conread position:56-414
               
               
               Cow position:chr22:12385688-12385328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:56-414
               
               
               Cow position:chr22:12399444-12399086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:56-414
               
               
               Cow position:chr22:12476157-12475799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-284
               
               
               Cow position:chr22:12419315-12419088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-414
               
               
               Cow position:chr22:12458627-12458270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-368
               
               
               Cow position:chr22:46654005-46654305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 78

               
               
               Conread position:68-414
               
               
               Cow position:chr22:14430478-14430824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 76

               
               
               Conread position:69-367
               
               
               Cow position:chr22:12385337-12385039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:70-385
               
               
               Cow position:chr22:14429640-14429955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 74

               
               
               Conread position:73-414
               
               
               Cow position:chr22:12432499-12432158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-378
               
               
               Cow position:chr22:12385416-12385112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-400
               
               
               Cow position:chr22:12476391-12476065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-414
               
               
               Cow position:chr22:12498868-12499208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-406
               
               
               Cow position:chr22:12419023-12418697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:130-376
               
               
               Cow position:chr22:14467945-14468191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:140-414
               
               
               Cow position:chr22:12476409-12476135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:140-414
               
               
               Cow position:chr22:12498850-12499124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-380
               
               
               Cow position:chr22:12419305-12419076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-411
               
               
               Cow position:chr22:12419305-12419129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-230
               
               
               Cow position:chr23:24546901-24546672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-335
               
               
               Cow position:chr23:25660412-25660746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-353
               
               
               Cow position:chr23:24639729-24640081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:1-410
               
               
               Cow position:chr23:24639645-24640054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 189

               
               
               Conread position:1-414
               
               
               Cow position:chr23:24560629-24560216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr23:24639225-24639638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:1-414
               
               
               Cow position:chr23:24639561-24639974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr23:25660244-25660657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 119

               
               
               Conread position:2-263
               
               
               Cow position:chr23:24654127-24654388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-333
               
               
               Cow position:chr23:24535783-24535452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):143, 152

               
               
               Conread position:2-334
               
               
               Cow position:chr23:25626709-25627041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 67

               
               
               Conread position:2-341
               
               
               Cow position:chr23:24626402-24626741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):306, 300

               
               
               Conread position:2-346
               
               
               Cow position:chr23:25698562-25698218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):222, 205

               
               
               Conread position:2-370
               
               
               Cow position:chr23:24522558-24522190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):315, 320

               
               
               Conread position:2-370
               
               
               Cow position:chr23:24560460-24560093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):223, 216

               
               
               Conread position:2-405
               
               
               Cow position:chr23:24535867-24535464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:2-405
               
               
               Cow position:chr23:25698478-25698075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):140, 124

               
               
               Conread position:2-406
               
               
               Cow position:chr23:25626544-25626945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:2-413
               
               
               Cow position:chr23:25660329-25660740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:2-414
               
               
               Cow position:chr23:24547236-24546824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr23:24560544-24560132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr23:24560712-24560300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:2-414
               
               
               Cow position:chr23:24560796-24560384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr23:24639310-24639722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:2-414
               
               
               Cow position:chr23:25626208-25626617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):312, 317

               
               
               Conread position:2-414
               
               
               Cow position:chr23:25626460-25626869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 75

               
               
               Conread position:2-432
               
               
               Cow position:chr23:24547068-24546637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):423, 0

               
               
               Conread position:3-405
               
               
               Cow position:chr23:24626319-24626721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-414
               
               
               Cow position:chr23:24560879-24560468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 300

               
               
               Conread position:3-414
               
               
               Cow position:chr23:24639395-24639806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 124

               
               
               Conread position:3-414
               
               
               Cow position:chr23:25698645-25698234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:4-322
               
               
               Cow position:chr23:25698392-25698074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 46

               
               
               Conread position:5-414
               
               
               Cow position:chr23:24536116-24535707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:6-400
               
               
               Cow position:chr23:24536031-24535637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-411
               
               
               Cow position:chr23:25626046-25626449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):115, 145

               
               
               Conread position:13-260
               
               
               Cow position:chr23:24626497-24626744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):135, 130

               
               
               Conread position:13-405
               
               
               Cow position:chr23:25626135-25626527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):390, 386

               
               
               Conread position:14-414
               
               
               Cow position:chr23:24547140-24546740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr23:25660173-25660573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:17-414
               
               
               Cow position:chr23:24535936-24535539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:56-414
               
               
               Cow position:chr23:24547266-24546908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-406
               
               
               Cow position:chr23:24654021-24654363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:67-405
               
               
               Cow position:chr23:25724052-25723714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-414
               
               
               Cow position:chr23:24560897-24560552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):242, 22

               
               
               Conread position:68-414
               
               
               Cow position:chr23:24522576-24522230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):331, 337

               
               
               Conread position:70-414
               
               
               Cow position:chr23:24626302-24626646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):239, 232

               
               
               Conread position:70-421
               
               
               Cow position:chr23:25660145-25660496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):245, 241

               
               
               Conread position:72-414
               
               
               Cow position:chr23:24547334-24546992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):150, 141

               
               
               Conread position:147-414
               
               
               Cow position:chr23:24654018-24654287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:150-427
               
               
               Cow position:chr23:25724053-25723776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:156-405
               
               
               Cow position:chr23:24521982-24521732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:156-414
               
               
               Cow position:chr23:25626026-25626284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:176-414
               
               
               Cow position:chr23:25724111-25723873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:1-414
               
               
               Cow position:chr24:17036034-17035621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):207, 202

               
               
               Conread position:1-414
               
               
               Cow position:chr24:17036118-17035705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-417
               
               
               Cow position:chr24:17035362-17034946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):386, 392

               
               
               Conread position:2-369
               
               
               Cow position:chr24:17035445-17035078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-410
               
               
               Cow position:chr24:17077916-17077508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr24:17035697-17035285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr24:17035865-17035453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr24:17035949-17035537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 301

               
               
               Conread position:2-414
               
               
               Cow position:chr24:17036285-17035873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr24:17036537-17036125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr24:17070468-17070880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):223, 216

               
               
               Conread position:8-324
               
               
               Cow position:chr24:17070726-17071042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):216, 205

               
               
               Conread position:8-335
               
               
               Cow position:chr24:17013179-17013506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-414
               
               
               Cow position:chr24:17036363-17035957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 295

               
               
               Conread position:8-414
               
               
               Cow position:chr24:17036612-17036209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:8-414
               
               
               Cow position:chr24:17070558-17070964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-400
               
               
               Cow position:chr24:17070648-17071034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:14-414
               
               
               Cow position:chr24:17035601-17035201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-425
               
               
               Cow position:chr24:17077988-17077577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-414
               
               
               Cow position:chr24:17035768-17035369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr24:17078153-17077756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:255
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-417
               
               
               Cow position:chr24:17078069-17077669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:23-405
               
               
               Cow position:chr24:17035508-17035126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 83

               
               
               Conread position:23-414
               
               
               Cow position:chr24:17036432-17036041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr24:17036147-17035789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 247

               
               
               Conread position:70-414
               
               
               Cow position:chr24:17070368-17070712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-294
               
               
               Cow position:chr24:16986428-16986647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-400
               
               
               Cow position:chr24:17013162-17013487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 143

               
               
               Conread position:80-414
               
               
               Cow position:chr24:17070462-17070796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:155-414
               
               
               Cow position:chr24:17078351-17078092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:159-386
               
               
               Cow position:chr24:16986428-16986655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 114

               
               
               Conread position:159-414
               
               
               Cow position:chr24:17013162-17013417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-414
               
               
               Cow position:chr24:16986425-16986599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr25:33144941-33145351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:2-247
               
               
               Cow position:chr25:33145191-33145436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-279
               
               
               Cow position:chr25:33157044-33156766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 124

               
               
               Conread position:2-300
               
               
               Cow position:chr25:23420560-23420858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-302
               
               
               Cow position:chr25:4657372-4657072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 42

               
               
               Conread position:2-326
               
               
               Cow position:chr25:33145107-33145431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:2-361
               
               
               Cow position:chr25:36800976-36801335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):207, 203

               
               
               Conread position:2-367
               
               
               Cow position:chr25:33298572-33298937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):119, 139

               
               
               Conread position:2-367
               
               
               Cow position:chr25:33299160-33299525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-378
               
               
               Cow position:chr25:34447199-34447575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 193

               
               
               Conread position:2-386
               
               
               Cow position:chr25:23420392-23420776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-394
               
               
               Cow position:chr25:36800808-36801200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:2-397
               
               
               Cow position:chr25:33305310-33304918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):143, 152

               
               
               Conread position:2-397
               
               
               Cow position:chr25:34762922-34763314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:2-405
               
               
               Cow position:chr25:33127811-33128214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-405
               
               
               Cow position:chr25:36801552-36801955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):385, 378

               
               
               Conread position:2-406
               
               
               Cow position:chr25:34447283-34447687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):313, 319

               
               
               Conread position:2-414
               
               
               Cow position:chr25:33157212-33156800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:2-414
               
               
               Cow position:chr25:33157380-33156968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 211

               
               
               Conread position:2-414
               
               
               Cow position:chr25:33298824-33299236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:2-414
               
               
               Cow position:chr25:33299076-33299488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr25:34447115-34447527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:2-414
               
               
               Cow position:chr25:34769611-34769202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):378, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr25:34769695-34769283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr25:34769779-34769367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr25:36800892-36801304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:2-414
               
               
               Cow position:chr25:36801384-36801796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):145, 151

               
               
               Conread position:2-427
               
               
               Cow position:chr25:34769863-34769438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:3-300
               
               
               Cow position:chr25:326507-326804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-324
               
               
               Cow position:chr25:33127896-33128217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:3-361
               
               
               Cow position:chr25:34732598-34732239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):120, 138

               
               
               Conread position:3-414
               
               
               Cow position:chr25:33157463-33157052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:5-374
               
               
               Cow position:chr25:34473519-34473885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 67

               
               
               Conread position:6-323
               
               
               Cow position:chr25:36801640-36801957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-357
               
               
               Cow position:chr25:34732343-34731992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):145, 139

               
               
               Conread position:6-368
               
               
               Cow position:chr25:22235842-22236204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:6-375
               
               
               Cow position:chr25:25652957-25653324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:6-414
               
               
               Cow position:chr25:34447035-34447443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-414
               
               
               Cow position:chr25:34769943-34769535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-339
               
               
               Cow position:chr25:34473687-34474018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:7-379
               
               
               Cow position:chr25:34763344-34763713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:7-400
               
               
               Cow position:chr25:34763260-34763650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:7-405
               
               
               Cow position:chr25:34763011-34763406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:8-237
               
               
               Cow position:chr25:427344-427573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 30

               
               
               Conread position:8-295
               
               
               Cow position:chr25:22236012-22236299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:8-400
               
               
               Cow position:chr25:34770025-34769633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 210

               
               
               Conread position:8-400
               
               
               Cow position:chr25:36800730-36801122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:8-405
               
               
               Cow position:chr25:33127733-33128130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:8-414
               
               
               Cow position:chr25:33144864-33145267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:8-414
               
               
               Cow position:chr25:33305387-33304985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):342, 69

               
               
               Conread position:9-397
               
               
               Cow position:chr25:34714132-34714522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 218

               
               
               Conread position:9-407
               
               
               Cow position:chr25:326429-326827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):126, 132

               
               
               Conread position:12-368
               
               
               Cow position:chr25:414756-414407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):141, 59

               
               
               Conread position:14-286
               
               
               Cow position:chr25:366746-367018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):139, 129

               
               
               Conread position:14-356
               
               
               Cow position:chr25:33157116-33156775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:14-361
               
               
               Cow position:chr25:33298920-33299267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-367
               
               
               Cow position:chr25:33299004-33299357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:14-369
               
               
               Cow position:chr25:23420488-23420843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:14-378
               
               
               Cow position:chr25:22235934-22236298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:14-379
               
               
               Cow position:chr25:34447379-34447742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):210, 203

               
               
               Conread position:14-386
               
               
               Cow position:chr25:23420320-23420692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):210, 200

               
               
               Conread position:14-389
               
               
               Cow position:chr25:33299508-33299878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):363, 311

               
               
               Conread position:14-400
               
               
               Cow position:chr25:33305943-33305563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:14-405
               
               
               Cow position:chr25:346469-346860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):139, 129

               
               
               Conread position:14-414
               
               
               Cow position:chr25:33157284-33156884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:14-414
               
               
               Cow position:chr25:34770103-34769703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-426
               
               
               Cow position:chr25:36800652-36801064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:15-367
               
               
               Cow position:chr25:33298669-33299021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:15-405
               
               
               Cow position:chr25:33145036-33145426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):112, 126

               
               
               Conread position:17-338
               
               
               Cow position:chr25:326947-327268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):258, 264

               
               
               Conread position:17-405
               
               
               Cow position:chr25:34446962-34447350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:17-414
               
               
               Cow position:chr25:33157532-33157136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:20-414
               
               
               Cow position:chr25:33127661-33128055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:41-386
               
               
               Cow position:chr25:18642207-18641860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 103

               
               
               Conread position:53-366
               
               
               Cow position:chr25:34732632-34732319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-323
               
               
               Cow position:chr25:34763474-34763741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):165, 156

               
               
               Conread position:56-361
               
               
               Cow position:chr25:34763141-34763446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):165, 156

               
               
               Conread position:56-367
               
               
               Cow position:chr25:36801522-36801833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):214, 208

               
               
               Conread position:56-379
               
               
               Cow position:chr25:33299382-33299705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr25:33299298-33299656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:58-337
               
               
               Cow position:chr25:34762810-34763088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):163, 150

               
               
               Conread position:73-414
               
               
               Cow position:chr25:36801371-36801712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):72, 82

               
               
               Conread position:74-414
               
               
               Cow position:chr25:33144846-33145183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):171, 165

               
               
               Conread position:76-406
               
               
               Cow position:chr25:366724-367054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-330
               
               
               Cow position:chr25:427330-427582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):147, 135

               
               
               Conread position:78-411
               
               
               Cow position:chr25:326924-327257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:79-366
               
               
               Cow position:chr25:33298565-33298852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 74

               
               
               Conread position:79-414
               
               
               Cow position:chr25:36800633-36800968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 134

               
               
               Conread position:98-414
               
               
               Cow position:chr25:23420320-23420636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):210, 200

               
               
               Conread position:125-414
               
               
               Cow position:chr25:18642207-18641915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:150-414
               
               
               Cow position:chr25:34447011-34447275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-414
               
               
               Cow position:chr25:22235819-22236082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:159-410
               
               
               Cow position:chr25:414698-414448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):219, 226

               
               
               Conread position:160-397
               
               
               Cow position:chr25:34446937-34447174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-391
               
               
               Cow position:chr25:34433020-34433251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:162-385
               
               
               Cow position:chr25:427330-427553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:224-414
               
               
               Cow position:chr25:427308-427498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr27:21615930-21615519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):366, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr27:21616013-21615602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):197, 67

               
               
               Conread position:14-366
               
               
               Cow position:chr27:21615750-21615399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:74-376
               
               
               Cow position:chr27:21615774-21615473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:1-397
               
               
               Cow position:chr28:11333877-11333481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):221, 213

               
               
               Conread position:2-237
               
               
               Cow position:chr28:34696341-34696576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-323
               
               
               Cow position:chr28:7758013-7758334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):128, 136

               
               
               Conread position:2-345
               
               
               Cow position:chr28:7758417-7758760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-369
               
               
               Cow position:chr28:7757761-7758128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):151, 143

               
               
               Conread position:2-397
               
               
               Cow position:chr28:9253112-9253507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-397
               
               
               Cow position:chr28:9290181-9290570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:2-400
               
               
               Cow position:chr28:7757677-7758075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):283, 307

               
               
               Conread position:2-405
               
               
               Cow position:chr28:9253196-9253599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr28:7810357-7810760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr28:34696005-34696417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr28:34696089-34696501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 68

               
               
               Conread position:3-400
               
               
               Cow position:chr28:7758334-7758731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):127, 138

               
               
               Conread position:4-397
               
               
               Cow position:chr28:7757511-7757904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-323
               
               
               Cow position:chr28:34696261-34696578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 125

               
               
               Conread position:6-336
               
               
               Cow position:chr28:33210325-33210656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:6-367
               
               
               Cow position:chr28:34673452-34673813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-405
               
               
               Cow position:chr28:34696177-34696576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-396
               
               
               Cow position:chr28:9253033-9253422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:8-393
               
               
               Cow position:chr28:34695927-34696312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 60

               
               
               Conread position:8-414
               
               
               Cow position:chr28:9298749-9299152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:14-250
               
               
               Cow position:chr28:9253376-9253612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):131, 139

               
               
               Conread position:14-360
               
               
               Cow position:chr28:7757605-7757951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):268, 262

               
               
               Conread position:14-414
               
               
               Cow position:chr28:7757437-7757837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:15-419
               
               
               Cow position:chr28:34695850-34696253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):401, 0

               
               
               Conread position:16-414
               
               
               Cow position:chr28:11334114-11333716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):116, 125

               
               
               Conread position:39-414
               
               
               Cow position:chr28:11333923-11333548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-414
               
               
               Cow position:chr28:11333997-11333632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):339, 9

               
               
               Conread position:56-334
               
               
               Cow position:chr28:9253334-9253612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-367
               
               
               Cow position:chr28:7757983-7758294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-367
               
               
               Cow position:chr28:7810327-7810629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):168, 157

               
               
               Conread position:56-405
               
               
               Cow position:chr28:34673418-34673767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:56-414
               
               
               Cow position:chr28:9298713-9299068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:68-360
               
               
               Cow position:chr28:7757407-7757699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:68-400
               
               
               Cow position:chr28:9253010-9253342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-414
               
               
               Cow position:chr28:9299218-9299558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-414
               
               
               Cow position:chr28:34695829-34696165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:161-414
               
               
               Cow position:chr28:33210228-33210481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:246-427
               
               
               Cow position:chr28:34695829-34696010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:2-410
               
               
               Cow position:chr29:39627331-39626926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):385, 75

               
               
               Conread position:2-414
               
               
               Cow position:chr29:39627415-39627006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 39

               
               
               Conread position:67-323
               
               
               Cow position:chr29:39627101-39626845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-405
               
               
               Cow position:chr29:39627177-39626847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:150-411
               
               
               Cow position:chr29:39627519-39627258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):238, 244

               
               
               Conread position:1-427
               
               
               Cow position:chr3:62722065-62721639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:2-414
               
               
               Cow position:chr3:62722148-62721736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 49

               
               
               Conread position:4-414
               
               
               Cow position:chr3:68045695-68046106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):5, 209

               
               
               Conread position:7-367
               
               
               Cow position:chr3:20194904-20195264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):217, 205

               
               
               Conread position:8-411
               
               
               Cow position:chr3:68045784-68046187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-369
               
               
               Cow position:chr3:68045958-68046313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr3:62722220-62721820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):127, 122

               
               
               Conread position:14-414
               
               
               Cow position:chr3:62722304-62721904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):294, 288

               
               
               Conread position:14-419
               
               
               Cow position:chr3:62743034-62743434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:56-294
               
               
               Cow position:chr3:68027491-68027729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:68-369
               
               
               Cow position:chr3:68045676-68045977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):240, 226

               
               
               Conread position:69-414
               
               
               Cow position:chr3:68045593-68045938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 72

               
               
               Conread position:79-409
               
               
               Cow position:chr3:62722323-62721993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):230, 224

               
               
               Conread position:83-414
               
               
               Cow position:chr3:20194728-20195059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-387
               
               
               Cow position:chr3:68027503-68027738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-407
               
               
               Cow position:chr3:68027083-68027338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:175-414
               
               
               Cow position:chr3:62722311-62722072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:185-369
               
               
               Cow position:chr3:68027032-68027216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-414
               
               
               Cow position:chr4:42314291-42313944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:1-166
               
               
               Cow position:chr6:49396805-49396970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-261
               
               
               Cow position:chr6:49396722-49396983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):250, 0

               
               
               Conread position:2-360
               
               
               Cow position:chr6:49341085-49341443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-400
               
               
               Cow position:chr6:49340497-49340895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr6:49396056-49396462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr6:49396386-49396798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-415
               
               
               Cow position:chr6:49396554-49396967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:3-414
               
               
               Cow position:chr6:49395889-49396294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):340, 0

               
               
               Conread position:6-286
               
               
               Cow position:chr6:49429249-49429527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:6-406
               
               
               Cow position:chr6:49362436-49362824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:6-411
               
               
               Cow position:chr6:49429081-49429486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-414
               
               
               Cow position:chr6:49428661-49429069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 64

               
               
               Conread position:6-414
               
               
               Cow position:chr6:49428913-49429321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:6-419
               
               
               Cow position:chr6:49428997-49429409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 374

               
               
               Conread position:6-427
               
               
               Cow position:chr6:49428493-49428914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 374

               
               
               Conread position:8-363
               
               
               Cow position:chr6:49396644-49396999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-414
               
               
               Cow position:chr6:49396476-49396882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-425
               
               
               Cow position:chr6:49362198-49362603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:13-397
               
               
               Cow position:chr6:49362035-49362407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):289, 0

               
               
               Conread position:13-414
               
               
               Cow position:chr6:49428415-49428817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 131

               
               
               Conread position:14-397
               
               
               Cow position:chr6:49341013-49341396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr6:49428753-49429153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:14-414
               
               
               Cow position:chr6:49428837-49429237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 56

               
               
               Conread position:14-427
               
               
               Cow position:chr6:49428333-49428746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-378
               
               
               Cow position:chr6:49340594-49340957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):267, 258

               
               
               Conread position:15-414
               
               
               Cow position:chr6:49340426-49340825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 258

               
               
               Conread position:15-414
               
               
               Cow position:chr6:49340678-49341077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:15-414
               
               
               Cow position:chr6:49340930-49341329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:16-405
               
               
               Cow position:chr6:49396232-49396621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:16-428
               
               
               Cow position:chr6:49395818-49396230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:17-385
               
               
               Cow position:chr6:49429176-49429542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):329, 0

               
               
               Conread position:17-405
               
               
               Cow position:chr6:49396155-49396537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:17-405
               
               
               Cow position:chr6:49396317-49396705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr6:49340764-49341161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):367, 360

               
               
               Conread position:21-414
               
               
               Cow position:chr6:49340851-49341245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:37-358
               
               
               Cow position:chr6:49362623-49362948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):243, 0

               
               
               Conread position:41-405
               
               
               Cow position:chr6:49395678-49396039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:49-405
               
               
               Cow position:chr6:49361904-49362259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:63-368
               
               
               Cow position:chr6:49428213-49428519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:67-367
               
               
               Cow position:chr6:49362329-49362629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-393
               
               
               Cow position:chr6:49362005-49362331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):220, 232

               
               
               Conread position:76-414
               
               
               Cow position:chr6:49340403-49340741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-427
               
               
               Cow position:chr6:49428213-49428494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):254, 249

               
               
               Conread position:160-427
               
               
               Cow position:chr6:49340403-49340670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):224, 219

               
               
               Conread position:203-414
               
               
               Cow position:chr6:49340362-49340573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-372
               
               
               Cow position:chr7:8277352-8277723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 120

               
               
               Conread position:1-379
               
               
               Cow position:chr7:3180125-3180503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr7:3180461-3180873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):44, 48

               
               
               Conread position:1-414
               
               
               Cow position:chr7:18390254-18390667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:1-414
               
               
               Cow position:chr7:42879016-42878603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr7:42879184-42878771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-300
               
               
               Cow position:chr7:18390507-18390805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):146, 126

               
               
               Conread position:2-334
               
               
               Cow position:chr7:8278109-8278441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):219, 204

               
               
               Conread position:2-343
               
               
               Cow position:chr7:1015116-1015457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:2-360
               
               
               Cow position:chr7:8277689-8278047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:2-367
               
               
               Cow position:chr7:8277941-8278306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:2-367
               
               
               Cow position:chr7:18390423-18390788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 118

               
               
               Conread position:2-367
               
               
               Cow position:chr7:42878847-42878482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-368
               
               
               Cow position:chr7:8242808-8243174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:2-369
               
               
               Cow position:chr7:8277773-8278140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):235, 193

               
               
               Conread position:2-370
               
               
               Cow position:chr7:8277857-8278225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:2-370
               
               
               Cow position:chr7:18390171-18390539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:2-371
               
               
               Cow position:chr7:8277605-8277974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:2-371
               
               
               Cow position:chr7:8324826-8325195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:2-371
               
               
               Cow position:chr7:8325246-8325615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:2-373
               
               
               Cow position:chr7:8325750-8326121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:2-380
               
               
               Cow position:chr7:8243563-8243941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:2-385
               
               
               Cow position:chr7:8277437-8277820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:2-406
               
               
               Cow position:chr7:42878679-42878275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr7:1014696-1015108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:2-414
               
               
               Cow position:chr7:1014948-1015360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 46

               
               
               Conread position:2-414
               
               
               Cow position:chr7:3179790-3180202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr7:3179958-3180370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr7:3180042-3180454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 139

               
               
               Conread position:2-414
               
               
               Cow position:chr7:8324742-8325154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 121

               
               
               Conread position:2-414
               
               
               Cow position:chr7:8325078-8325490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 110

               
               
               Conread position:2-414
               
               
               Cow position:chr7:8325582-8325994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:2-414
               
               
               Cow position:chr7:11601094-11600682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):139, 118

               
               
               Conread position:2-414
               
               
               Cow position:chr7:42878931-42878519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):207, 201

               
               
               Conread position:2-414
               
               
               Cow position:chr7:42879099-42878687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-239
               
               
               Cow position:chr7:42878505-42878274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-369
               
               
               Cow position:chr7:28846690-28847051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):117, 111

               
               
               Conread position:8-371
               
               
               Cow position:chr7:8243401-8243764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:8-414
               
               
               Cow position:chr7:1014786-1015192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):122, 133

               
               
               Conread position:8-414
               
               
               Cow position:chr7:3180300-3180706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-414
               
               
               Cow position:chr7:42878757-42878351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-378
               
               
               Cow position:chr7:18390095-18390463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:13-394
               
               
               Cow position:chr7:1015043-1015424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:14-359
               
               
               Cow position:chr7:1014876-1015221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):210, 198

               
               
               Conread position:14-370
               
               
               Cow position:chr7:28846612-28846968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):209, 203

               
               
               Conread position:14-371
               
               
               Cow position:chr7:8243491-8243848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):302, 307

               
               
               Conread position:14-397
               
               
               Cow position:chr7:18390351-18390734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):219, 204

               
               
               Conread position:14-414
               
               
               Cow position:chr7:3180222-3180622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):299, 305

               
               
               Conread position:14-414
               
               
               Cow position:chr7:3180390-3180790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 199

               
               
               Conread position:15-360
               
               
               Cow position:chr7:11600829-11600484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):192, 188

               
               
               Conread position:15-372
               
               
               Cow position:chr7:8325511-8325868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:17-342
               
               
               Cow position:chr7:1014297-1014622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr7:42879252-42878855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-414
               
               
               Cow position:chr7:11600873-11600514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:56-414
               
               
               Cow position:chr7:3179760-3180118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-372
               
               
               Cow position:chr7:8325228-8325532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:71-371
               
               
               Cow position:chr7:8243045-8243345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 72

               
               
               Conread position:71-409
               
               
               Cow position:chr7:1014267-1014605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-406
               
               
               Cow position:chr7:11601190-11600858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):133, 129

               
               
               Conread position:82-386
               
               
               Cow position:chr7:8242804-8243108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:105-369
               
               
               Cow position:chr7:1014217-1014481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:150-414
               
               
               Cow position:chr7:18390151-18390415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 60

               
               
               Conread position:152-370
               
               
               Cow position:chr7:11434496-11434278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):154, 145

               
               
               Conread position:156-414
               
               
               Cow position:chr7:1014682-1014940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:158-379
               
               
               Cow position:chr7:8277257-8277478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:158-414
               
               
               Cow position:chr7:11601190-11600934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:180-414
               
               
               Cow position:chr7:3179716-3179950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-414
               
               
               Cow position:chr8:45201362-45201775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:1-414
               
               
               Cow position:chr8:46816137-46816550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-393
               
               
               Cow position:chr8:45201615-45202006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-405
               
               
               Cow position:chr8:48407201-48406798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-408
               
               
               Cow position:chr8:48406697-48406291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):370, 379

               
               
               Conread position:2-409
               
               
               Cow position:chr8:46816894-46817301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):222, 213

               
               
               Conread position:2-413
               
               
               Cow position:chr8:55581083-55581494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr8:45201111-45201523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-414
               
               
               Cow position:chr8:45201447-45201859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 48

               
               
               Conread position:2-414
               
               
               Cow position:chr8:48406949-48406537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):210, 199

               
               
               Conread position:2-414
               
               
               Cow position:chr8:48407453-48407041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-420
               
               
               Cow position:chr8:55581251-55581668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):198, 207

               
               
               Conread position:3-333
               
               
               Cow position:chr8:48407116-48406786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-370
               
               
               Cow position:chr8:48407284-48406917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-414
               
               
               Cow position:chr8:48407620-48407209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:3-415
               
               
               Cow position:chr8:48406864-48406452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 110

               
               
               Conread position:5-414
               
               
               Cow position:chr8:48407534-48407125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:6-414
               
               
               Cow position:chr8:55581003-55581411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-331
               
               
               Cow position:chr8:46817068-46817391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-414
               
               
               Cow position:chr8:46816312-46816718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 118

               
               
               Conread position:8-414
               
               
               Cow position:chr8:46816816-46817222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:8-414
               
               
               Cow position:chr8:55580919-55581327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:14-414
               
               
               Cow position:chr8:45201207-45201607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr8:46816066-46816466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chr8:46816486-46816886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:14-414
               
               
               Cow position:chr8:46816570-46816970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):391, 386

               
               
               Conread position:14-414
               
               
               Cow position:chr8:46816654-46817054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):184, 176

               
               
               Conread position:14-414
               
               
               Cow position:chr8:46816738-46817138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):111, 96

               
               
               Conread position:17-411
               
               
               Cow position:chr8:45201546-45201940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr8:45201042-45201439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr8:55581182-55581579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):291, 285

               
               
               Conread position:56-374
               
               
               Cow position:chr8:46817032-46817350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-405
               
               
               Cow position:chr8:55581389-55581738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:56-414
               
               
               Cow position:chr8:45201333-45201691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-414
               
               
               Cow position:chr8:48407315-48406957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-414
               
               
               Cow position:chr8:45200999-45201355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-414
               
               
               Cow position:chr8:55580897-55581243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-414
               
               
               Cow position:chr8:48407635-48407293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:77-414
               
               
               Cow position:chr8:48406706-48406369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:152-414
               
               
               Cow position:chr8:55580897-55581159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:229-414
               
               
               Cow position:chr8:55580890-55581075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-410
               
               
               Cow position:chr8:6958005-6957831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 67

               
               
               Conread position:1-368
               
               
               Cow position:chrX:25324991-25324624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):144, 152

               
               
               Conread position:2-335
               
               
               Cow position:chrX:25310235-25310568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:2-370
               
               
               Cow position:chrX:25310151-25310519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-405
               
               
               Cow position:chrX:13826687-13826284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:2-414
               
               
               Cow position:chrX:25309815-25310227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):119, 108

               
               
               Conread position:2-414
               
               
               Cow position:chrX:25309983-25310395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:2-414
               
               
               Cow position:chrX:25310067-25310479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):137, 114

               
               
               Conread position:2-414
               
               
               Cow position:chrX:29045167-29044755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:2-414
               
               
               Cow position:chrX:29045251-29044839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 94

               
               
               Conread position:8-367
               
               
               Cow position:chrX:13826597-13826238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:8-384
               
               
               Cow position:chrX:13826765-13826389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:8-397
               
               
               Cow position:chrX:25324732-25324343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 39

               
               
               Conread position:8-414
               
               
               Cow position:chrX:25309905-25310311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:8-414
               
               
               Cow position:chrX:25325740-25325334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-397
               
               
               Cow position:chrX:29045077-29044688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):7, 190

               
               
               Conread position:12-368
               
               
               Cow position:chrX:25325064-25324708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-344
               
               
               Cow position:chrX:29044987-29044657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 100

               
               
               Conread position:14-360
               
               
               Cow position:chrX:25309743-25310089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):192, 176

               
               
               Conread position:14-414
               
               
               Cow position:chrX:25324810-25324410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 36

               
               
               Conread position:14-414
               
               
               Cow position:chrX:25325146-25324746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chrX:25325230-25324830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-414
               
               
               Cow position:chrX:25325314-25324914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:14-414
               
               
               Cow position:chrX:25325398-25324998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:17-414
               
               
               Cow position:chrX:25325563-25325166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):292, 286

               
               
               Conread position:19-414
               
               
               Cow position:chrX:25325645-25325250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):199, 205

               
               
               Conread position:19-414
               
               
               Cow position:chrX:29045318-29044923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:21-414
               
               
               Cow position:chrX:25324888-25324494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:55-414
               
               
               Cow position:chrX:14181496-14181137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:55-414
               
               
               Cow position:chrX:25325777-25325418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-411
               
               
               Cow position:chrX:14181411-14181056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:68-400
               
               
               Cow position:chrX:25309713-25310045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):241, 234

               
               
               Conread position:68-414
               
               
               Cow position:chrX:25325428-25325082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:74-356
               
               
               Cow position:chrX:29045746-29045464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:158-414
               
               
               Cow position:chrX:29045746-29045490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0
Conread position:	17-378
Cow position:	chr1:2000230-1999869 (view UCSC Genome Browser custom track)
Alignm length:	363
Alignm identity:	221
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	40, 27
Conread position:	1-287
Cow position:	chr10:9010146-9009860 (view UCSC Genome Browser custom track)
Alignm length:	290
Alignm identity:	186
Alignm E-value:	7e-25
Alignm gaps (pig, cow):	142, 119
Conread position:	2-337
Cow position:	chr10:8996333-8995997 (view UCSC Genome Browser custom track)
Alignm length:	337
Alignm identity:	214
Alignm E-value:	6e-33
Alignm gaps (pig, cow):	327, 0
Conread position:	2-367
Cow position:	chr10:9010397-9010032 (view UCSC Genome Browser custom track)
Alignm length:	368
Alignm identity:	223
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	133, 139
Conread position:	2-399
Cow position:	chr10:9010229-9009832 (view UCSC Genome Browser custom track)
Alignm length:	399
Alignm identity:	240
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	301, 306
Conread position:	2-411
Cow position:	chr10:8996417-8996008 (view UCSC Genome Browser custom track)
Alignm length:	411
Alignm identity:	265
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	55, 44
Conread position:	2-414
Cow position:	chr10:9010481-9010069 (view UCSC Genome Browser custom track)
Alignm length:	415
Alignm identity:	259
Alignm E-value:	8e-36
Alignm gaps (pig, cow):	55, 42
Conread position:	2-419
Cow position:	chr10:8996753-8996337 (view UCSC Genome Browser custom track)
Alignm length:	419
Alignm identity:	281
Alignm E-value:	0
Alignm gaps (pig, cow):	223, 216
Conread position:	6-414
Cow position:	chr10:8996497-8996089 (view UCSC Genome Browser custom track)
Alignm length:	409
Alignm identity:	259
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	0, 0
Conread position:	14-386
Cow position:	chr10:21939057-21938687 (view UCSC Genome Browser custom track)
Alignm length:	378
Alignm identity:	240
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	16, 6
Conread position:	14-410
Cow position:	chr10:9031268-9031664 (view UCSC Genome Browser custom track)
Alignm length:	397
Alignm identity:	219
Alignm E-value:	6e-34
Alignm gaps (pig, cow):	0, 0
Conread position:	14-414
Cow position:	chr10:8996657-8996257 (view UCSC Genome Browser custom track)
Alignm length:	401
Alignm identity:	253
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	0, 0
Conread position:	14-427
Cow position:	chr10:8996573-8996160 (view UCSC Genome Browser custom track)
Alignm length:	416
Alignm identity:	265
Alignm E-value:	4.00001e-41
Alignm gaps (pig, cow):	43, 36
Conread position:	15-384
Cow position:	chr10:21939140-21938771 (view UCSC Genome Browser custom track)
Alignm length:	374
Alignm identity:	244
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	18, 28
Conread position:	58-414
Cow position:	chr10:9031228-9031584 (view UCSC Genome Browser custom track)
Alignm length:	358
Alignm identity:	221
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	87, 96
Conread position:	72-414
Cow position:	chr10:8996851-8996509 (view UCSC Genome Browser custom track)
Alignm length:	343
Alignm identity:	230
Alignm E-value:	0
Alignm gaps (pig, cow):	0, 0
Conread position:	1-414
Cow position:	chr11:74555013-74554600 (view UCSC Genome Browser custom track)
Alignm length:	414
Alignm identity:	254
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	0, 0
Conread position:	6-335
Cow position:	chr11:74554504-74554175 (view UCSC Genome Browser custom track)
Alignm length:	330
Alignm identity:	209
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	0, 0
Conread position:	7-399
Cow position:	chr11:74555091-74554699 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	251
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	0, 0
Conread position:	8-396
Cow position:	chr11:74554838-74554450 (view UCSC Genome Browser custom track)
Alignm length:	392
Alignm identity:	258
Alignm E-value:	7.00649e-44
Alignm gaps (pig, cow):	137, 146