Cow genome map

Conread name: Ss1.1-rptbr0134_l9.5

Conread position: 580-770
Cow position: chr1:10647587-10647775 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 106

Conread position: 625-794
Cow position: chr1:43225938-43226116 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 634-807
Cow position: chr1:57007785-57007957 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 90, 41

Conread position: 639-789
Cow position: chr1:70660861-70661014 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 132, 0

Conread position: 503-888
Cow position: chr10:53810548-53810931 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 69

Conread position: 608-810
Cow position: chr10:39400283-39400482 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 61

Conread position: 621-810
Cow position: chr10:6565588-6565397 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 13, 153

Conread position: 623-737
Cow position: chr10:55616045-55616162 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 624-798
Cow position: chr10:66466344-66466167 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 624-805
Cow position: chr10:37244156-37244338 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 147, 0

Conread position: 633-794
Cow position: chr10:14418039-14417877 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 130, 74

Conread position: 634-813
Cow position: chr10:27747614-27747801 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 22, 100

Conread position: 700-813
Cow position: chr10:20931948-20931834 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 618-805
Cow position: chr11:78189753-78189564 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 112

Conread position: 623-810
Cow position: chr11:7625883-7625691 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 139, 118

Conread position: 578-797
Cow position: chr12:33815277-33815492 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 147

Conread position: 625-813
Cow position: chr12:23997107-23996917 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 16, 113

Conread position: 625-812
Cow position: chr13:28772511-28772698 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 132, 68

Conread position: 625-813
Cow position: chr13:33498571-33498761 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 12, 171

Conread position: 635-803
Cow position: chr14:32266768-32266929 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 623-801
Cow position: chr15:9643227-9643045 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 625-810
Cow position: chr15:9270828-9271022 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 11, 114

Conread position: 626-804
Cow position: chr15:27448339-27448512 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 60

Conread position: 669-794
Cow position: chr15:28991862-28991736 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 607-791
Cow position: chr16:47793369-47793549 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 131

Conread position: 623-771
Cow position: chr16:4711207-4711355 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 114

Conread position: 638-811
Cow position: chr16:47985189-47985018 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 28

Conread position: 570-746
Cow position: chr17:2510037-2509856 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 172

Conread position: 570-746
Cow position: chr17:2514430-2514611 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 172

Conread position: 584-797
Cow position: chr17:28394636-28394852 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 181

Conread position: 619-768
Cow position: chr17:28161170-28161316 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 95

Conread position: 625-809
Cow position: chr17:9050823-9051013 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 117

Conread position: 636-779
Cow position: chr17:29122767-29122624 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 135, 29

Conread position: 636-810
Cow position: chr17:27556430-27556605 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 131, 0

Conread position: 623-798
Cow position: chr18:5440411-5440586 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 10, 53

Conread position: 625-769
Cow position: chr18:16355150-16355007 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 112

Conread position: 625-793
Cow position: chr18:39878635-39878474 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 62

Conread position: 627-808
Cow position: chr18:11793314-11793499 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 629-812
Cow position: chr18:44040919-44041106 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 109

Conread position: 623-810
Cow position: chr19:47455197-47455385 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 18, 129

Conread position: 635-759
Cow position: chr19:17458417-17458292 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 573-789
Cow position: chr2:60891951-60892159 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 113

Conread position: 573-799
Cow position: chr2:48776277-48776047 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 137

Conread position: 623-801
Cow position: chr2:72198995-72199178 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 573-769
Cow position: chr22:29570541-29570346 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 15

Conread position: 625-810
Cow position: chr22:42967211-42967401 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 169

Conread position: 634-827
Cow position: chr22:42617756-42617941 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 92, 36

Conread position: 539-796
Cow position: chr23:511849-512102 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 21

Conread position: 636-808
Cow position: chr23:28769754-28769580 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 127, 0

Conread position: 623-810
Cow position: chr24:17094269-17094074 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 61

Conread position: 570-808
Cow position: chr25:21301584-21301343 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 55

Conread position: 597-810
Cow position: chr25:10901063-10901284 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 15

Conread position: 624-801
Cow position: chr25:23841318-23841136 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 115

Conread position: 636-801
Cow position: chr25:9608987-9609159 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 8

Conread position: 638-805
Cow position: chr25:16133351-16133522 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 128, 0

Conread position: 573-770
Cow position: chr26:14415324-14415137 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 638-810
Cow position: chr26:26936137-26935964 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 37

Conread position: 625-805
Cow position: chr27:6145286-6145102 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 627-802
Cow position: chr27:30276789-30276971 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 573-761
Cow position: chr28:4203325-4203509 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 141

Conread position: 628-813
Cow position: chr28:2833933-2834118 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 9, 75

Conread position: 629-791
Cow position: chr28:13830319-13830149 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 559-806
Cow position: chr29:36588628-36588387 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 48

Conread position: 578-812
Cow position: chr29:5199375-5199608 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 135

Conread position: 624-801
Cow position: chr29:40353792-40353615 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 81

Conread position: 622-807
Cow position: chr3:48401226-48401042 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 12, 40

Conread position: 625-758
Cow position: chr3:43383713-43383579 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 10, 114

Conread position: 625-792
Cow position: chr3:24784552-24784718 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 44

Conread position: 625-801
Cow position: chr3:26883139-26883315 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 13, 100

Conread position: 627-800
Cow position: chr3:46354540-46354711 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 63

Conread position: 567-750
Cow position: chr4:36724158-36723974 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 573-804
Cow position: chr4:41072793-41072555 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 28, 56

Conread position: 589-816
Cow position: chr4:55367909-55368134 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 11

Conread position: 624-798
Cow position: chr4:30952938-30953122 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 625-807
Cow position: chr4:36424208-36424022 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 13, 40

Conread position: 640-792
Cow position: chr4:43986062-43986218 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 53

Conread position: 585-812
Cow position: chr5:71395051-71394826 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 50, 123

Conread position: 588-803
Cow position: chr5:49007589-49007375 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 46

Conread position: 625-808
Cow position: chr5:16068906-16068720 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 113

Conread position: 626-791
Cow position: chr5:67295925-67296090 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 8, 62

Conread position: 570-805
Cow position: chr6:37434973-37435215 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 53

Conread position: 623-808
Cow position: chr6:29730183-29729995 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 9, 90

Conread position: 625-801
Cow position: chr6:32730997-32730828 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 47

Conread position: 630-812
Cow position: chr6:11166132-11166316 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 127, 107

Conread position: 631-797
Cow position: chr6:56611654-56611821 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 123, 76

Conread position: 635-816
Cow position: chr6:2056658-2056475 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 164

Conread position: 538-735
Cow position: chr7:23625087-23625283 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 95, 22

Conread position: 584-801
Cow position: chr7:38402349-38402572 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 625-805
Cow position: chr7:50764040-50763854 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 561-776
Cow position: chr8:54935786-54935568 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 13, 55

Conread position: 640-806
Cow position: chr8:48192004-48191836 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 126, 92

Conread position: 625-813
Cow position: chr9:20933821-20933628 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 56

Conread position: 627-808
Cow position: chr9:24696150-24695968 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 36

Conread position: 625-769
Cow position: chrX:22142364-22142218 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 634-747
Cow position: chrX:32753711-32753824 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 103