Cow genome map
| Conread name: | Ss1.1-rpty621b_e14.5.5 |
| Conread position: | 1-258 |
| Cow position: | chr1:43452272-43452022 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 40-252 |
| Cow position: | chr1:72999882-73000091 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 112, 54 |
| Conread position: | 58-221 |
| Cow position: | chr1:57268576-57268736 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 1-251 |
| Cow position: | chr10:49576954-49577187 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 2-226 |
| Cow position: | chr10:27427646-27427876 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 126, 15 |
| Conread position: | 97-267 |
| Cow position: | chr10:63810599-63810433 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-266 |
| Cow position: | chr11:8088511-8088250 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 1-309 |
| Cow position: | chr12:36190820-36190517 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 125 |
| Conread position: | 1-268 |
| Cow position: | chr13:57445913-57446173 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 3-147 |
| Cow position: | chr13:30335051-30335195 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-264 |
| Cow position: | chr14:40766210-40765952 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 93-266 |
| Cow position: | chr14:47646099-47646264 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-268 |
| Cow position: | chr16:42015687-42015424 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 2-308 |
| Cow position: | chr16:4810857-4810555 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 3-253 |
| Cow position: | chr17:14362794-14363051 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 109, 139 |
| Conread position: | 1-190 |
| Cow position: | chr18:48797155-48796960 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 137 |
| Conread position: | 1-264 |
| Cow position: | chr18:28964991-28965264 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 76, 146 |
| Conread position: | 3-243 |
| Cow position: | chr18:48134365-48134600 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 30-265 |
| Cow position: | chr2:50813926-50814166 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 101-265 |
| Cow position: | chr2:15272101-15272263 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 3-260 |
| Cow position: | chr20:31843896-31844151 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 124, 134 |
| Conread position: | 50-257 |
| Cow position: | chr20:39632214-39632415 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-225 |
| Cow position: | chr21:31307603-31307823 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-265 |
| Cow position: | chr21:47002918-47002660 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 4-202 |
| Cow position: | chr22:26291978-26292174 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 137-246 |
| Cow position: | chr22:37736951-37737058 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-255 |
| Cow position: | chr23:22236084-22236333 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-124 |
| Cow position: | chr24:38465419-38465296 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-262 |
| Cow position: | chr24:40278198-40277946 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 5-262 |
| Cow position: | chr24:27204289-27204543 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 131 |
| Conread position: | 8-258 |
| Cow position: | chr24:39172644-39172401 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-309 |
| Cow position: | chr28:17516696-17517000 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-309 |
| Cow position: | chr28:25598518-25598218 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-258 |
| Cow position: | chr29:25664760-25665013 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 125 |
| Conread position: | 1-255 |
| Cow position: | chr3:27171754-27171505 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 125 |
| Conread position: | 1-256 |
| Cow position: | chr3:8194253-8193992 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 181 |
| Conread position: | 4-243 |
| Cow position: | chr3:43331295-43331065 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 132-260 |
| Cow position: | chr3:16292668-16292792 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 1-312 |
| Cow position: | chr4:44408906-44408601 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-264 |
| Cow position: | chr5:39888487-39888758 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 1-268 |
| Cow position: | chr5:62642942-62643202 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 2-262 |
| Cow position: | chr5:43892130-43891874 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 120-257 |
| Cow position: | chr5:44765942-44765809 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 122-257 |
| Cow position: | chr6:6780607-6780475 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-256 |
| Cow position: | chr7:56670172-56669904 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 80, 116 |
| Conread position: | 5-257 |
| Cow position: | chr7:44480873-44481118 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 105-266 |
| Cow position: | chr7:40162659-40162817 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-244 |
| Cow position: | chr8:26863287-26863524 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 1-263 |
| Cow position: | chr9:51908813-51908558 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-263 |
| Cow position: | chrX:20170608-20170854 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 86, 0 |