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Cow genome map

           
Conread name:
           
Ss1.1-rspc005_m16.5
        

               
Conread position:
               
1658-1979
               

               
Cow position:
               
chr10:55371657-55371983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr10:17160569-17160258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
257, 17
               

               
Conread position:
               
1658-1985
               

               
Cow position:
               
chr10:32271993-32271659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr10:38465096-38465420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
1664-1982
               

               
Cow position:
               
chr10:18724266-18724590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
1665-1983
               

               
Cow position:
               
chr10:41615820-41615489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 147
               

               
Conread position:
               
1686-1989
               

               
Cow position:
               
chr10:24671188-24671504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
1687-1938
               

               
Cow position:
               
chr10:19080382-19080127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
1687-1975
               

               
Cow position:
               
chr10:42889534-42889241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
1687-1983
               

               
Cow position:
               
chr10:10210557-10210864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
1706-1983
               

               
Cow position:
               
chr10:60043335-60043616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
1708-1983
               

               
Cow position:
               
chr10:17121559-17121839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr10:15411137-15411419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr10:18576655-18576933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr10:49992298-49992024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 116
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr10:68317330-68317606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
1724-1983
               

               
Cow position:
               
chr10:68067127-68066864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
1736-1981
               

               
Cow position:
               
chr10:54534748-54534990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
1654-1818
               

               
Cow position:
               
chr11:66129981-66129815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 34
               

               
Conread position:
               
1656-1840
               

               
Cow position:
               
chr11:53746039-53745849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 28
               

               
Conread position:
               
1658-1812
               

               
Cow position:
               
chr11:20516335-20516179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
1658-1893
               

               
Cow position:
               
chr11:56555692-56555932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
1658-1981
               

               
Cow position:
               
chr11:21577269-21577606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr11:81327079-81327395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
1664-1847
               

               
Cow position:
               
chr11:65405014-65404832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
1664-1973
               

               
Cow position:
               
chr11:2799442-2799108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
1664-1975
               

               
Cow position:
               
chr11:55796798-55796475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
154, 17
               

               
Conread position:
               
1664-1983
               

               
Cow position:
               
chr11:52268096-52267759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 155
               

               
Conread position:
               
1667-1982
               

               
Cow position:
               
chr11:58047335-58047659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
1675-1983
               

               
Cow position:
               
chr11:21835399-21835079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
63, 124
               

               
Conread position:
               
1677-1974
               

               
Cow position:
               
chr11:56004070-56003782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
1686-1984
               

               
Cow position:
               
chr11:28639060-28639371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
1714-1965
               

               
Cow position:
               
chr11:71003363-71003627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 147
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr11:11487215-11487482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr11:44024028-44024306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr11:51479754-51480031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr11:75457950-75457671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
1716-1983
               

               
Cow position:
               
chr11:16999768-17000044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
1737-1983
               

               
Cow position:
               
chr11:10170687-10170944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
1738-1983
               

               
Cow position:
               
chr11:15098502-15098748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
97, 75
               

               
Conread position:
               
1740-1983
               

               
Cow position:
               
chr11:5335897-5336143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 115
               

               
Conread position:
               
1744-1983
               

               
Cow position:
               
chr11:80411622-80411379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
1746-1983
               

               
Cow position:
               
chr11:59956106-59956349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 40
               

               
Conread position:
               
1752-1983
               

               
Cow position:
               
chr11:46034601-46034371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
1646-1982
               

               
Cow position:
               
chr12:15523469-15523815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
1657-1983
               

               
Cow position:
               
chr12:33608386-33608040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr12:45008587-45008929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
1661-1980
               

               
Cow position:
               
chr12:8148277-8147941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
1661-1981
               

               
Cow position:
               
chr12:12022513-12022179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr12:30342633-30342336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
1697-1822
               

               
Cow position:
               
chr12:29003783-29003655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1709-1982
               

               
Cow position:
               
chr12:15311808-15312096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr12:37844567-37844838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
1738-1981
               

               
Cow position:
               
chr12:38557341-38557094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
1751-1977
               

               
Cow position:
               
chr12:9759243-9759474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
62, 97
               

               
Conread position:
               
1810-1982
               

               
Cow position:
               
chr12:38554329-38554151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 44
               

               
Conread position:
               
1644-1937
               

               
Cow position:
               
chr13:60595185-60594882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
1658-1822
               

               
Cow position:
               
chr13:17632104-17631946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr13:48087720-48087384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
1661-1991
               

               
Cow position:
               
chr13:20129558-20129902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
1665-1975
               

               
Cow position:
               
chr13:4930206-4930517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
1686-1970
               

               
Cow position:
               
chr13:5036164-5035865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 158
               

               
Conread position:
               
1686-1981
               

               
Cow position:
               
chr13:19475049-19474753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
1708-1982
               

               
Cow position:
               
chr13:16955029-16955307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
1714-1980
               

               
Cow position:
               
chr13:15620104-15619838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
1716-1973
               

               
Cow position:
               
chr13:55797764-55798023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
1716-1980
               

               
Cow position:
               
chr13:42899812-42900078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
1753-1983
               

               
Cow position:
               
chr13:25926041-25925805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
1630-1980
               

               
Cow position:
               
chr14:1687216-1687577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
28, 235
               

               
Conread position:
               
1648-1983
               

               
Cow position:
               
chr14:19912138-19911795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
1655-1981
               

               
Cow position:
               
chr14:46428160-46428468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
1658-1982
               

               
Cow position:
               
chr14:5047496-5047173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr14:15788952-15788614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
1668-1981
               

               
Cow position:
               
chr14:14271833-14272154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
1674-1981
               

               
Cow position:
               
chr14:27089960-27089647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
1686-1814
               

               
Cow position:
               
chr14:40135636-40135504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
1693-1983
               

               
Cow position:
               
chr14:8574726-8575024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
1702-1983
               

               
Cow position:
               
chr14:36399651-36399361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 78
               

               
Conread position:
               
1713-1983
               

               
Cow position:
               
chr14:42134984-42135258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr14:2268337-2268621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr14:34934438-34934167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
1715-1983
               

               
Cow position:
               
chr14:18961289-18961017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
1734-1983
               

               
Cow position:
               
chr14:10444095-10444349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
1752-1980
               

               
Cow position:
               
chr14:8107613-8107845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
1652-1983
               

               
Cow position:
               
chr15:20366913-20367258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 29
               

               
Conread position:
               
1652-1983
               

               
Cow position:
               
chr15:45335843-45335496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
1655-1983
               

               
Cow position:
               
chr15:15252073-15252409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
1655-1983
               

               
Cow position:
               
chr15:41132323-41131983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
1661-1984
               

               
Cow position:
               
chr15:37059808-37059474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
1664-1822
               

               
Cow position:
               
chr15:10624830-10624668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
1664-1983
               

               
Cow position:
               
chr15:9343946-9344265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
1664-1983
               

               
Cow position:
               
chr15:15899884-15899561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
1664-1983
               

               
Cow position:
               
chr15:19903473-19903147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
150, 20
               

               
Conread position:
               
1675-1983
               

               
Cow position:
               
chr15:42770515-42770836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
1686-1901
               

               
Cow position:
               
chr15:46223402-46223192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
1694-1983
               

               
Cow position:
               
chr15:38378355-38378059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
1698-1982
               

               
Cow position:
               
chr15:24468228-24467933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
1706-1983
               

               
Cow position:
               
chr15:37862127-37861849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
1736-1982
               

               
Cow position:
               
chr15:19310893-19310645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
1737-1983
               

               
Cow position:
               
chr15:11608102-11608339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 118
               

               
Conread position:
               
1640-1983
               

               
Cow position:
               
chr16:18093002-18093346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 15
               

               
Conread position:
               
1654-1971
               

               
Cow position:
               
chr16:14719156-14718833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 177
               

               
Conread position:
               
1655-1980
               

               
Cow position:
               
chr16:7916461-7916793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
81, 176
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr16:17939419-17939082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr16:21966528-21966198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
1664-1812
               

               
Cow position:
               
chr16:391703-391550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1665-1981
               

               
Cow position:
               
chr16:41583591-41583908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
1666-1974
               

               
Cow position:
               
chr16:30300540-30300844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
1690-1983
               

               
Cow position:
               
chr16:31476068-31475770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
49, 74
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr16:20680902-20681168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
191, 25
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr16:50800862-50800586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
1714-1984
               

               
Cow position:
               
chr16:20211742-20212007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
1714-1988
               

               
Cow position:
               
chr16:43360096-43360374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
1740-1983
               

               
Cow position:
               
chr16:16316790-16316543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
1653-1803
               

               
Cow position:
               
chr17:19532897-19533051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
1656-1983
               

               
Cow position:
               
chr17:8599192-8598849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
1658-1982
               

               
Cow position:
               
chr17:1539866-1540195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
1664-1981
               

               
Cow position:
               
chr17:33121107-33120795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
1667-1838
               

               
Cow position:
               
chr17:26731556-26731383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
69, 120
               

               
Conread position:
               
1681-1976
               

               
Cow position:
               
chr17:37428273-37427968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 103
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr17:11167397-11167703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr17:20891814-20891507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 39
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr17:27109557-27109861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
1687-1981
               

               
Cow position:
               
chr17:32919823-32919525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 138
               

               
Conread position:
               
1688-1983
               

               
Cow position:
               
chr17:7791375-7791086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
85, 47
               

               
Conread position:
               
1688-1983
               

               
Cow position:
               
chr17:12021412-12021720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
1703-1964
               

               
Cow position:
               
chr17:31588058-31588335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
1712-1982
               

               
Cow position:
               
chr17:34631746-34631460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
1713-1977
               

               
Cow position:
               
chr17:39583569-39583298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
1748-1981
               

               
Cow position:
               
chr17:29637490-29637252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
1758-1980
               

               
Cow position:
               
chr17:37832520-37832750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 90
               

               
Conread position:
               
1660-1961
               

               
Cow position:
               
chr18:43454511-43454814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
1661-1810
               

               
Cow position:
               
chr18:19347904-19347756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
1674-1979
               

               
Cow position:
               
chr18:19170837-19171135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 75
               

               
Conread position:
               
1680-1999
               

               
Cow position:
               
chr18:33344976-33345308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr18:15908565-15908271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 148
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr18:26304074-26304385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1713-1966
               

               
Cow position:
               
chr18:32726882-32726620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
1716-1961
               

               
Cow position:
               
chr18:37964953-37964708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 69
               

               
Conread position:
               
1717-1977
               

               
Cow position:
               
chr18:43208978-43208710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
1721-1963
               

               
Cow position:
               
chr18:48109739-48109499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 13
               

               
Conread position:
               
1737-1981
               

               
Cow position:
               
chr18:35765791-35765545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
173, 43
               

               
Conread position:
               
1737-1983
               

               
Cow position:
               
chr18:25682698-25682950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
1742-1983
               

               
Cow position:
               
chr18:41283047-41282805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
1651-1832
               

               
Cow position:
               
chr19:43252027-43251845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
1658-1975
               

               
Cow position:
               
chr19:35290146-35289822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
1658-1979
               

               
Cow position:
               
chr19:7470466-7470137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
77, 131
               

               
Conread position:
               
1658-1982
               

               
Cow position:
               
chr19:16855264-16854940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
1658-1982
               

               
Cow position:
               
chr19:25096701-25096351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr19:39337523-39337177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
1668-1979
               

               
Cow position:
               
chr19:23564975-23564656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
1695-1981
               

               
Cow position:
               
chr19:34023961-34024250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
1737-1982
               

               
Cow position:
               
chr19:7545592-7545835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
1738-1982
               

               
Cow position:
               
chr19:23336408-23336654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
165, 47
               

               
Conread position:
               
1751-1983
               

               
Cow position:
               
chr19:27206582-27206343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
1752-1982
               

               
Cow position:
               
chr19:44502676-44502917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 108
               

               
Conread position:
               
1655-1822
               

               
Cow position:
               
chr20:891159-891331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
1657-1812
               

               
Cow position:
               
chr20:23001135-23000979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
1657-1982
               

               
Cow position:
               
chr20:38003276-38002945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
1661-1984
               

               
Cow position:
               
chr20:28906282-28906613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 18
               

               
Conread position:
               
1664-1983
               

               
Cow position:
               
chr20:19872455-19872138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
1675-1983
               

               
Cow position:
               
chr20:4252313-4252630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 85
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr20:22033041-22032730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 34
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr20:35836020-35836329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 252
               

               
Conread position:
               
1714-1979
               

               
Cow position:
               
chr20:19308102-19308364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
1714-1981
               

               
Cow position:
               
chr20:13423213-13423476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr20:12007135-12006859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr20:31101171-31101446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
1737-1972
               

               
Cow position:
               
chr20:8072370-8072608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 43
               

               
Conread position:
               
1746-1982
               

               
Cow position:
               
chr20:35873042-35873287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
1771-1983
               

               
Cow position:
               
chr20:36074423-36074201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
1639-1812
               

               
Cow position:
               
chr21:14763149-14762972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1655-1822
               

               
Cow position:
               
chr21:36690414-36690588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1655-1983
               

               
Cow position:
               
chr21:19288143-19288471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
1713-1983
               

               
Cow position:
               
chr21:2436204-2436481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
1738-1981
               

               
Cow position:
               
chr21:36816702-36816946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
1757-1983
               

               
Cow position:
               
chr21:26532285-26532514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
1657-1981
               

               
Cow position:
               
chr22:6361806-6361495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
1686-1890
               

               
Cow position:
               
chr22:7238367-7238578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
54, 166
               

               
Conread position:
               
1689-1983
               

               
Cow position:
               
chr22:27505603-27505904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
1691-1983
               

               
Cow position:
               
chr22:38252503-38252204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 147
               

               
Conread position:
               
1697-1983
               

               
Cow position:
               
chr22:35610596-35610887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
1706-1980
               

               
Cow position:
               
chr22:15331447-15331722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr22:41962299-41962027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
1737-1983
               

               
Cow position:
               
chr22:17355513-17355754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 109
               

               
Conread position:
               
1751-1981
               

               
Cow position:
               
chr22:32475804-32476038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 89
               

               
Conread position:
               
1641-1983
               

               
Cow position:
               
chr23:27887544-27887884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
183, 12
               

               
Conread position:
               
1645-1982
               

               
Cow position:
               
chr23:12469326-12469657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
207, 75
               

               
Conread position:
               
1656-1983
               

               
Cow position:
               
chr23:30302466-30302810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
1658-1980
               

               
Cow position:
               
chr23:37144540-37144866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr23:41114142-41113815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
1665-1977
               

               
Cow position:
               
chr23:9261199-9260882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
1688-1983
               

               
Cow position:
               
chr23:38481927-38481623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
1714-1970
               

               
Cow position:
               
chr23:29634068-29633811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
1714-1980
               

               
Cow position:
               
chr23:11461006-11460730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 135
               

               
Conread position:
               
1714-1980
               

               
Cow position:
               
chr23:24758763-24759037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 76
               

               
Conread position:
               
1719-1980
               

               
Cow position:
               
chr23:37392119-37392384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
1720-1981
               

               
Cow position:
               
chr23:24843899-24843633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
1751-1982
               

               
Cow position:
               
chr23:37624517-37624297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 29
               

               
Conread position:
               
1658-1822
               

               
Cow position:
               
chr24:23236943-23237110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr24:15894571-15894249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr24:32117999-32117655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
1675-1995
               

               
Cow position:
               
chr24:36075231-36074913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
1687-1983
               

               
Cow position:
               
chr24:21797482-21797793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
137, 57
               

               
Conread position:
               
1714-1977
               

               
Cow position:
               
chr24:32412548-32412285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
1715-1980
               

               
Cow position:
               
chr24:38330030-38329769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 34
               

               
Conread position:
               
1735-1981
               

               
Cow position:
               
chr24:23112180-23111937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
1777-1983
               

               
Cow position:
               
chr24:34530761-34530967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 47
               

               
Conread position:
               
1791-1983
               

               
Cow position:
               
chr24:17823261-17823458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 38
               

               
Conread position:
               
1657-1828
               

               
Cow position:
               
chr25:26314790-26314961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
1661-1812
               

               
Cow position:
               
chr25:6748178-6748026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
1667-1983
               

               
Cow position:
               
chr25:35200973-35201288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
1686-1971
               

               
Cow position:
               
chr25:18227158-18227456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
1688-1822
               

               
Cow position:
               
chr25:30354166-30354027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1688-1983
               

               
Cow position:
               
chr25:16905663-16905356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
48, 196
               

               
Conread position:
               
1695-1980
               

               
Cow position:
               
chr25:24408497-24408201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
1697-1979
               

               
Cow position:
               
chr25:17527751-17527466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
1709-1912
               

               
Cow position:
               
chr25:36257650-36257860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
1714-1982
               

               
Cow position:
               
chr25:37396785-37397062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
1718-1983
               

               
Cow position:
               
chr25:8888556-8888828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 109
               

               
Conread position:
               
1737-1980
               

               
Cow position:
               
chr25:40742238-40742001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
174, 48
               

               
Conread position:
               
1737-1983
               

               
Cow position:
               
chr25:28040018-28039775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
166, 10
               

               
Conread position:
               
1785-1971
               

               
Cow position:
               
chr25:29152954-29153146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
1661-1821
               

               
Cow position:
               
chr26:18011331-18011173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1661-1892
               

               
Cow position:
               
chr26:2208294-2208529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr26:10104615-10104271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
1688-1983
               

               
Cow position:
               
chr26:17206164-17205858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 157
               

               
Conread position:
               
1714-1980
               

               
Cow position:
               
chr26:24579741-24579470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 76
               

               
Conread position:
               
1657-1983
               

               
Cow position:
               
chr27:12756857-12756521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
1694-1983
               

               
Cow position:
               
chr27:20863208-20863508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 180
               

               
Conread position:
               
1715-1982
               

               
Cow position:
               
chr27:22227374-22227641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
1636-1983
               

               
Cow position:
               
chr28:26234606-26234966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
1640-1913
               

               
Cow position:
               
chr28:5226265-5226548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
1655-1983
               

               
Cow position:
               
chr28:2852834-2852491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
1658-1812
               

               
Cow position:
               
chr28:27137490-27137334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 26
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr28:32711905-32712225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
1664-1982
               

               
Cow position:
               
chr28:33952793-33952462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
1671-1822
               

               
Cow position:
               
chr28:19881311-19881461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr28:4011081-4011394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
1692-1980
               

               
Cow position:
               
chr28:4106841-4107135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
1697-1937
               

               
Cow position:
               
chr28:7552637-7552383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
1711-1937
               

               
Cow position:
               
chr28:7768145-7768367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
1714-1982
               

               
Cow position:
               
chr28:33065048-33065315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr28:1511693-1511967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr28:26155430-26155703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
1759-1983
               

               
Cow position:
               
chr28:12987133-12986906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 96
               

               
Conread position:
               
1657-1982
               

               
Cow position:
               
chr29:20492784-20492439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
167, 24
               

               
Conread position:
               
1661-1981
               

               
Cow position:
               
chr29:19406259-19406581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
1665-1982
               

               
Cow position:
               
chr29:42546624-42546941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
1666-1983
               

               
Cow position:
               
chr29:19214191-19213859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
1689-1983
               

               
Cow position:
               
chr29:17374614-17374322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
215, 10
               

               
Conread position:
               
1695-1981
               

               
Cow position:
               
chr29:43006144-43006433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
1698-1983
               

               
Cow position:
               
chr29:29505206-29505483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
1703-1982
               

               
Cow position:
               
chr29:41363405-41363689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 86
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chr29:19493964-19493697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
189, 62
               

               
Conread position:
               
1738-1983
               

               
Cow position:
               
chr29:25251938-25251698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
192, 47
               

               
Conread position:
               
1781-1983
               

               
Cow position:
               
chr29:25968725-25968519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
122, 63
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr9:48190379-48190638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
247-436
               

               
Cow position:
               
chr9:48197295-48197484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
434-775
               

               
Cow position:
               
chr9:48202260-48202601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
774-986
               

               
Cow position:
               
chr9:48204182-48204394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
984-1180
               

               
Cow position:
               
chr9:48204596-48204792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1177-1288
               

               
Cow position:
               
chr9:48207361-48207472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1285-1722
               

               
Cow position:
               
chr9:48209603-48210032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 164
               

               
Conread position:
               
1648-1983
               

               
Cow position:
               
chr9:35207466-35207821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
31, 182
               

               
Conread position:
               
1652-1983
               

               
Cow position:
               
chr9:64107292-64107642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
1653-1987
               

               
Cow position:
               
chr9:23126517-23126840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
1658-1812
               

               
Cow position:
               
chr9:11219695-11219536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1658-1982
               

               
Cow position:
               
chr9:40406004-40405668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
1658-1983
               

               
Cow position:
               
chr9:55254084-55254417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
1661-1973
               

               
Cow position:
               
chr9:33805608-33805929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 189
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr9:18640345-18640680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr9:33090798-33090469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr9:50724709-50725043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
1661-1983
               

               
Cow position:
               
chr9:60075180-60074851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
1669-1983
               

               
Cow position:
               
chr9:38030669-38031001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
1686-1979
               

               
Cow position:
               
chr9:44825753-44825443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr9:11044907-11045214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr9:39135112-39135418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 132
               

               
Conread position:
               
1686-1983
               

               
Cow position:
               
chr9:47714550-47714235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
1714-1981
               

               
Cow position:
               
chr9:28118863-28119134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
1715-1994
               

               
Cow position:
               
chr9:44356793-44357076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
1725-1981
               

               
Cow position:
               
chr9:48210125-48210374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1741-1983
               

               
Cow position:
               
chr9:50193116-50193364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
1787-1981
               

               
Cow position:
               
chr9:34077717-34077922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1657-1938
               

               
Cow position:
               
chrX:33965780-33966066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
1657-1983
               

               
Cow position:
               
chrX:31286256-31286607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
1658-1982
               

               
Cow position:
               
chrX:37379920-37379594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
1664-1916
               

               
Cow position:
               
chrX:31916105-31915840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 113
               

               
Conread position:
               
1666-1983
               

               
Cow position:
               
chrX:37176091-37176420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 233
               

               
Conread position:
               
1669-1974
               

               
Cow position:
               
chrX:33014286-33013972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
1714-1983
               

               
Cow position:
               
chrX:26362429-26362700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
1714-1987
               

               
Cow position:
               
chrX:9477105-9477387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
1837-1997
               

               
Cow position:
               
chrX:2811921-2811763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 85