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Cow genome map

           
Conread name:
           
Ss1.1-rspc033_l13.5
        

               
Conread position:
               
2-588
               

               
Cow position:
               
chr1:81841325-81840740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
4-564
               

               
Cow position:
               
chr1:38399172-38399698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
5, 21
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr1:82912009-82911571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
5-601
               

               
Cow position:
               
chr1:56164688-56165299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
7-632
               

               
Cow position:
               
chr1:80358028-80357353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
7-638
               

               
Cow position:
               
chr1:31364956-31364280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 359
               

               
Conread position:
               
8-383
               

               
Cow position:
               
chr1:23052904-23053283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
12-455
               

               
Cow position:
               
chr1:89481982-89482438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 126
               

               
Conread position:
               
12-643
               

               
Cow position:
               
chr1:42737593-42738254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 242
               

               
Conread position:
               
12-643
               

               
Cow position:
               
chr1:72984630-72985277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 135
               

               
Conread position:
               
15-588
               

               
Cow position:
               
chr1:102781149-102780580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
15-603
               

               
Cow position:
               
chr1:57658038-57658671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 362
               

               
Conread position:
               
16-371
               

               
Cow position:
               
chr1:41519600-41519241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
16-418
               

               
Cow position:
               
chr1:72038414-72037986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 305
               

               
Conread position:
               
16-514
               

               
Cow position:
               
chr1:29039192-29039711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 304
               

               
Conread position:
               
16-564
               

               
Cow position:
               
chr1:63502965-63503519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
16-575
               

               
Cow position:
               
chr1:73197873-73197290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 336
               

               
Conread position:
               
16-580
               

               
Cow position:
               
chr1:31417347-31416762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
16-598
               

               
Cow position:
               
chr1:13581829-13581225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
16-601
               

               
Cow position:
               
chr1:47162479-47161855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
16-601
               

               
Cow position:
               
chr1:56193015-56192389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 355
               

               
Conread position:
               
16-601
               

               
Cow position:
               
chr1:68606391-68605767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
16-638
               

               
Cow position:
               
chr1:79635825-79635176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
16-642
               

               
Cow position:
               
chr1:56724307-56724972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
16-642
               

               
Cow position:
               
chr1:82653815-82654480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 303
               

               
Conread position:
               
17-292
               

               
Cow position:
               
chr1:58338113-58338421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chr1:81777586-81777925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 47
               

               
Conread position:
               
17-600
               

               
Cow position:
               
chr1:85779292-85778681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 247
               

               
Conread position:
               
17-601
               

               
Cow position:
               
chr1:26517735-26517114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 350
               

               
Conread position:
               
17-601
               

               
Cow position:
               
chr1:99914578-99915210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 383
               

               
Conread position:
               
17-632
               

               
Cow position:
               
chr1:62243493-62242836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
17-632
               

               
Cow position:
               
chr1:76750814-76750155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:3934106-3933432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 350
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:28874233-28874896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 235
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:30533869-30533194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 348
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:32566770-32566103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 200
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:33552079-33552765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 354
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:62805019-62804351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 248
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:69404158-69404828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 251
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:72185730-72185048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 351
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:82923002-82922336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 305
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:91891969-91891293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 351
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:93855668-93856340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 252
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr1:102433889-102433206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
17-644
               

               
Cow position:
               
chr1:79455802-79455127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 211
               

               
Conread position:
               
18-564
               

               
Cow position:
               
chr1:40575369-40575938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
18-632
               

               
Cow position:
               
chr1:72081929-72082573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 274
               

               
Conread position:
               
18-638
               

               
Cow position:
               
chr1:33713222-33713904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 343
               

               
Conread position:
               
18-642
               

               
Cow position:
               
chr1:39544945-39545612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 143
               

               
Conread position:
               
19-643
               

               
Cow position:
               
chr1:5503122-5503791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 317
               

               
Conread position:
               
20-537
               

               
Cow position:
               
chr1:78923398-78923921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 33
               

               
Conread position:
               
53-336
               

               
Cow position:
               
chr1:85668001-85667728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
53-601
               

               
Cow position:
               
chr1:81927442-81926900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
115, 16
               

               
Conread position:
               
65-215
               

               
Cow position:
               
chr1:27541931-27542083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 5
               

               
Conread position:
               
67-269
               

               
Cow position:
               
chr1:57569177-57569399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
67-305
               

               
Cow position:
               
chr1:11860034-11859784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 238
               

               
Conread position:
               
67-545
               

               
Cow position:
               
chr1:86595283-86594783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
67-601
               

               
Cow position:
               
chr1:17940563-17939996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 294
               

               
Conread position:
               
67-602
               

               
Cow position:
               
chr1:18241007-18240457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 236
               

               
Conread position:
               
67-602
               

               
Cow position:
               
chr1:98658698-98658146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 80
               

               
Conread position:
               
67-642
               

               
Cow position:
               
chr1:82477185-82477804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 295
               

               
Conread position:
               
67-643
               

               
Cow position:
               
chr1:56143124-56142530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 281
               

               
Conread position:
               
68-578
               

               
Cow position:
               
chr1:38419884-38420388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 179
               

               
Conread position:
               
69-325
               

               
Cow position:
               
chr1:44972530-44972796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
69-387
               

               
Cow position:
               
chr1:59934599-59934948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
69-387
               

               
Cow position:
               
chr1:86611349-86611679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
69-423
               

               
Cow position:
               
chr1:67292841-67293206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
69-465
               

               
Cow position:
               
chr1:5356339-5356759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 290
               

               
Conread position:
               
69-502
               

               
Cow position:
               
chr1:20525690-20526148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 293
               

               
Conread position:
               
69-525
               

               
Cow position:
               
chr1:32909040-32909498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 50
               

               
Conread position:
               
69-570
               

               
Cow position:
               
chr1:4209419-4209952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 293
               

               
Conread position:
               
69-575
               

               
Cow position:
               
chr1:58177900-58177383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
69-585
               

               
Cow position:
               
chr1:38417350-38417879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 134
               

               
Conread position:
               
69-601
               

               
Cow position:
               
chr1:79111700-79112226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 248
               

               
Conread position:
               
69-601
               

               
Cow position:
               
chr1:91529428-91528886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 54
               

               
Conread position:
               
69-632
               

               
Cow position:
               
chr1:53199756-53200360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
69-642
               

               
Cow position:
               
chr1:20830104-20830722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 292
               

               
Conread position:
               
69-642
               

               
Cow position:
               
chr1:77922918-77923536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 291
               

               
Conread position:
               
69-643
               

               
Cow position:
               
chr1:63604559-63603943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 289
               

               
Conread position:
               
69-643
               

               
Cow position:
               
chr1:65387533-65388140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 289
               

               
Conread position:
               
69-643
               

               
Cow position:
               
chr1:94660887-94661497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
69-644
               

               
Cow position:
               
chr1:29363511-29364123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 81
               

               
Conread position:
               
69-644
               

               
Cow position:
               
chr1:43570173-43569607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 99
               

               
Conread position:
               
71-601
               

               
Cow position:
               
chr1:55275818-55275256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 289
               

               
Conread position:
               
72-642
               

               
Cow position:
               
chr1:29412941-29412375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
73-312
               

               
Cow position:
               
chr1:30519815-30520070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
73-423
               

               
Cow position:
               
chr1:18193111-18193484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
73-430
               

               
Cow position:
               
chr1:66486938-66487312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
73-514
               

               
Cow position:
               
chr1:30063582-30064060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
106, 40
               

               
Conread position:
               
73-563
               

               
Cow position:
               
chr1:77110848-77110357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
98, 39
               

               
Conread position:
               
73-564
               

               
Cow position:
               
chr1:89733275-89732784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
73-587
               

               
Cow position:
               
chr1:85532144-85531604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
73-598
               

               
Cow position:
               
chr1:34693899-34694458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
73-599
               

               
Cow position:
               
chr1:51965493-51966050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:8826262-8826829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 267
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:17035370-17034820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:21088648-21089206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 288
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:46836837-46837399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:76703065-76702559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:81288350-81288910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:85792896-85793456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 289
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:86546920-86546362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 294
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr1:91900241-91900797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 247
               

               
Conread position:
               
73-602
               

               
Cow position:
               
chr1:99315462-99315983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
73-603
               

               
Cow position:
               
chr1:24443146-24442583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 136
               

               
Conread position:
               
73-619
               

               
Cow position:
               
chr1:22905991-22906542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
73-632
               

               
Cow position:
               
chr1:40683525-40682925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr1:9259700-9260313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 289
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr1:17011517-17010910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 286
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr1:33897475-33898088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr1:57423617-57423004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 289
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr1:67833914-67833305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 308
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr1:69767795-69768407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 289
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr1:3384727-3384111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr1:24652495-24653092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 59
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr1:52358042-52357431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 183
               

               
Conread position:
               
74-408
               

               
Cow position:
               
chr1:57972487-57972142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
74-514
               

               
Cow position:
               
chr1:24206438-24206034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
342, 8
               

               
Conread position:
               
74-601
               

               
Cow position:
               
chr1:73069848-73069285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
74-642
               

               
Cow position:
               
chr1:33852494-33853097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 279
               

               
Conread position:
               
74-643
               

               
Cow position:
               
chr1:55155781-55155195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
76-501
               

               
Cow position:
               
chr1:29976330-29975932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
76-643
               

               
Cow position:
               
chr1:88131994-88132604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 303
               

               
Conread position:
               
77-434
               

               
Cow position:
               
chr1:57696939-57696572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
19, 188
               

               
Conread position:
               
78-514
               

               
Cow position:
               
chr1:53364796-53365218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
78-575
               

               
Cow position:
               
chr1:40511795-40511274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 268
               

               
Conread position:
               
78-643
               

               
Cow position:
               
chr1:25551184-25551798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 221
               

               
Conread position:
               
79-378
               

               
Cow position:
               
chr1:91446685-91446980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
79-642
               

               
Cow position:
               
chr1:40056325-40056932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
86-599
               

               
Cow position:
               
chr1:91597477-91596939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
30, 170
               

               
Conread position:
               
89-601
               

               
Cow position:
               
chr1:76620230-76619704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
93-474
               

               
Cow position:
               
chr1:7141403-7141001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
50, 228
               

               
Conread position:
               
96-495
               

               
Cow position:
               
chr1:93235939-93236353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
49, 164
               

               
Conread position:
               
96-601
               

               
Cow position:
               
chr1:89494973-89494455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 168
               

               
Conread position:
               
96-637
               

               
Cow position:
               
chr1:88387495-88388038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 86
               

               
Conread position:
               
99-643
               

               
Cow position:
               
chr1:22619407-22618845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
108-609
               

               
Cow position:
               
chr1:61590929-61590408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
123-423
               

               
Cow position:
               
chr1:77613708-77614001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
123-586
               

               
Cow position:
               
chr1:72945038-72945493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
126-601
               

               
Cow position:
               
chr1:34683184-34683673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 81
               

               
Conread position:
               
130-601
               

               
Cow position:
               
chr1:87969598-87970083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 219
               

               
Conread position:
               
137-641
               

               
Cow position:
               
chr1:12060906-12060381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 72
               

               
Conread position:
               
141-637
               

               
Cow position:
               
chr1:18026464-18025923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
151-644
               

               
Cow position:
               
chr1:74285376-74284851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 200
               

               
Conread position:
               
153-502
               

               
Cow position:
               
chr1:5319689-5320042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
153-642
               

               
Cow position:
               
chr1:10723890-10724406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
156-599
               

               
Cow position:
               
chr1:34912283-34912746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 146
               

               
Conread position:
               
157-501
               

               
Cow position:
               
chr1:80445463-80445819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 192
               

               
Conread position:
               
157-601
               

               
Cow position:
               
chr1:26584412-26584874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 192
               

               
Conread position:
               
157-604
               

               
Cow position:
               
chr1:9379203-9378740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
157-642
               

               
Cow position:
               
chr1:67002470-67002981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 189
               

               
Conread position:
               
157-643
               

               
Cow position:
               
chr1:30074187-30074698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
157-643
               

               
Cow position:
               
chr1:59207763-59207251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 188
               

               
Conread position:
               
158-601
               

               
Cow position:
               
chr1:71561432-71560970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 191
               

               
Conread position:
               
159-643
               

               
Cow position:
               
chr1:49972855-49972345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
161-598
               

               
Cow position:
               
chr1:50988953-50988525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
232, 70
               

               
Conread position:
               
162-410
               

               
Cow position:
               
chr1:45018319-45018067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 98
               

               
Conread position:
               
163-583
               

               
Cow position:
               
chr1:51978503-51978909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
214, 68
               

               
Conread position:
               
163-601
               

               
Cow position:
               
chr1:67909871-67910322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 177
               

               
Conread position:
               
164-601
               

               
Cow position:
               
chr1:50941962-50941521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
51, 138
               

               
Conread position:
               
164-643
               

               
Cow position:
               
chr1:55777910-55778414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
165-580
               

               
Cow position:
               
chr1:31402122-31401720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
167-643
               

               
Cow position:
               
chr1:55320750-55320262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 178
               

               
Conread position:
               
167-644
               

               
Cow position:
               
chr1:81862660-81862155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 135
               

               
Conread position:
               
169-642
               

               
Cow position:
               
chr1:50210518-50210014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 180
               

               
Conread position:
               
171-477
               

               
Cow position:
               
chr1:21998090-21997773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 167
               

               
Conread position:
               
174-602
               

               
Cow position:
               
chr1:53563353-53563770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
176-361
               

               
Cow position:
               
chr1:91079558-91079370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 167
               

               
Conread position:
               
179-475
               

               
Cow position:
               
chr1:67316148-67316430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
179-602
               

               
Cow position:
               
chr1:23091990-23092408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
181-643
               

               
Cow position:
               
chr1:57365006-57364515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
186-579
               

               
Cow position:
               
chr1:52939444-52939839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
187-642
               

               
Cow position:
               
chr1:76095719-76095265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
188-643
               

               
Cow position:
               
chr1:31193192-31192746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
189-642
               

               
Cow position:
               
chr1:101794644-101795073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
239, 30
               

               
Conread position:
               
192-580
               

               
Cow position:
               
chr1:22345352-22345751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
194-504
               

               
Cow position:
               
chr1:77115310-77114992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
194-600
               

               
Cow position:
               
chr1:71740787-71740369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
197-564
               

               
Cow position:
               
chr1:50248343-50247972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
197-599
               

               
Cow position:
               
chr1:40748885-40748493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 122
               

               
Conread position:
               
197-643
               

               
Cow position:
               
chr1:90607526-90607037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 152
               

               
Conread position:
               
198-601
               

               
Cow position:
               
chr1:61541653-61542050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
208-632
               

               
Cow position:
               
chr1:89769169-89768725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
215-601
               

               
Cow position:
               
chr1:21116466-21116062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 126
               

               
Conread position:
               
216-384
               

               
Cow position:
               
chr1:84152282-84152448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
216-601
               

               
Cow position:
               
chr1:57746019-57745621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
216-601
               

               
Cow position:
               
chr1:88268708-88268323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
216-631
               

               
Cow position:
               
chr1:29035679-29036114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
216-643
               

               
Cow position:
               
chr1:48248285-48248731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
216-644
               

               
Cow position:
               
chr1:34507803-34508237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
174, 140
               

               
Conread position:
               
235-541
               

               
Cow position:
               
chr1:27187698-27188000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
185, 60
               

               
Conread position:
               
241-392
               

               
Cow position:
               
chr1:30282405-30282257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
241-601
               

               
Cow position:
               
chr1:69416878-69416520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
241-601
               

               
Cow position:
               
chr1:82565517-82565888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 10
               

               
Conread position:
               
241-643
               

               
Cow position:
               
chr1:86508506-86508077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 102
               

               
Conread position:
               
245-601
               

               
Cow position:
               
chr1:33350987-33351344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
172, 78
               

               
Conread position:
               
256-444
               

               
Cow position:
               
chr1:101013051-101012857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
256-601
               

               
Cow position:
               
chr1:82367194-82367535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
137, 86
               

               
Conread position:
               
259-472
               

               
Cow position:
               
chr1:2180756-2180968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
272-643
               

               
Cow position:
               
chr1:25053728-25054115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 70
               

               
Conread position:
               
277-554
               

               
Cow position:
               
chr1:11859318-11859035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
280-601
               

               
Cow position:
               
chr1:1828862-1828535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
284-601
               

               
Cow position:
               
chr1:72137440-72137762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
285-638
               

               
Cow position:
               
chr1:76741783-76741428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 31
               

               
Conread position:
               
290-599
               

               
Cow position:
               
chr1:98786391-98786710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
300-601
               

               
Cow position:
               
chr1:29607600-29607289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
300-642
               

               
Cow position:
               
chr1:21592052-21592416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
313-601
               

               
Cow position:
               
chr1:18964894-18964593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
318-603
               

               
Cow position:
               
chr1:30520271-30520566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
118, 133
               

               
Conread position:
               
323-601
               

               
Cow position:
               
chr1:39107070-39107353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
105, 37
               

               
Conread position:
               
332-601
               

               
Cow position:
               
chr1:73020434-73020160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
336-601
               

               
Cow position:
               
chr1:27112934-27112661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
336-643
               

               
Cow position:
               
chr1:77105521-77105199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
351-641
               

               
Cow position:
               
chr1:57569351-57569656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
75, 5
               

               
Conread position:
               
361-595
               

               
Cow position:
               
chr1:40436296-40436053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
362-602
               

               
Cow position:
               
chr1:72112529-72112782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 206
               

               
Conread position:
               
368-599
               

               
Cow position:
               
chr1:38386902-38386666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
378-642
               

               
Cow position:
               
chr1:30282308-30282013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
383-601
               

               
Cow position:
               
chr1:45003746-45003969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
383-601
               

               
Cow position:
               
chr1:102550056-102550270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
389-539
               

               
Cow position:
               
chr1:65021251-65021091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
396-601
               

               
Cow position:
               
chr1:40966857-40966642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
396-643
               

               
Cow position:
               
chr1:26813512-26813245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
399-603
               

               
Cow position:
               
chr1:57972033-57971817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
403-608
               

               
Cow position:
               
chr1:62921126-62921341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
419-642
               

               
Cow position:
               
chr1:82911243-82911001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
419-643
               

               
Cow position:
               
chr1:58338426-58338668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
420-638
               

               
Cow position:
               
chr1:89482537-89482771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 156
               

               
Conread position:
               
425-643
               

               
Cow position:
               
chr1:72037958-72037726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 102
               

               
Conread position:
               
428-637
               

               
Cow position:
               
chr1:18194105-18194332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
432-601
               

               
Cow position:
               
chr1:57696353-57696177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
433-643
               

               
Cow position:
               
chr1:6198698-6198465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
435-642
               

               
Cow position:
               
chr1:101012582-101012357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
71, 215
               

               
Conread position:
               
438-643
               

               
Cow position:
               
chr1:98617184-98616961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
444-601
               

               
Cow position:
               
chr1:19184710-19184540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
450-601
               

               
Cow position:
               
chr1:87435863-87436021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
459-642
               

               
Cow position:
               
chr1:5355310-5355108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
462-601
               

               
Cow position:
               
chr1:38476937-38477083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-642
               

               
Cow position:
               
chr10:54931043-54930374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 308
               

               
Conread position:
               
7-271
               

               
Cow position:
               
chr10:27664099-27663811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
7-379
               

               
Cow position:
               
chr10:14862846-14863217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
7-418
               

               
Cow position:
               
chr10:14842948-14843362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
7-599
               

               
Cow position:
               
chr10:39878266-39877626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 374
               

               
Conread position:
               
7-599
               

               
Cow position:
               
chr10:40641125-40641738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
11-410
               

               
Cow position:
               
chr10:19512747-19513172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 375
               

               
Conread position:
               
12-164
               

               
Cow position:
               
chr10:6405-6562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
12-362
               

               
Cow position:
               
chr10:40151085-40150723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 247
               

               
Conread position:
               
14-504
               

               
Cow position:
               
chr10:39180968-39181489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 354
               

               
Conread position:
               
15-601
               

               
Cow position:
               
chr10:17433527-17434147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 392
               

               
Conread position:
               
16-165
               

               
Cow position:
               
chr10:42752305-42752468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
16-325
               

               
Cow position:
               
chr10:51774034-51773706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 249
               

               
Conread position:
               
16-385
               

               
Cow position:
               
chr10:36469276-36468899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
16-504
               

               
Cow position:
               
chr10:20382838-20382342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 57
               

               
Conread position:
               
16-514
               

               
Cow position:
               
chr10:24976599-24976104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
16-573
               

               
Cow position:
               
chr10:11821917-11822517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 354
               

               
Conread position:
               
16-601
               

               
Cow position:
               
chr10:39778938-39778335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 319
               

               
Conread position:
               
16-601
               

               
Cow position:
               
chr10:55094442-55095062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 86
               

               
Conread position:
               
17-260
               

               
Cow position:
               
chr10:16926705-16926979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
17-271
               

               
Cow position:
               
chr10:29109967-29109702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
17-392
               

               
Cow position:
               
chr10:126460-126859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
17-601
               

               
Cow position:
               
chr10:38849463-38850063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 294
               

               
Conread position:
               
17-601
               

               
Cow position:
               
chr10:57988819-57988198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 356
               

               
Conread position:
               
17-602
               

               
Cow position:
               
chr10:7280930-7280307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 126
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr10:14334673-14333996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 365
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr10:30684321-30683641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 372
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr10:38344184-38343516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 350
               

               
Conread position:
               
17-644
               

               
Cow position:
               
chr10:1378678-1379346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
17-644
               

               
Cow position:
               
chr10:29845472-29844808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 246
               

               
Conread position:
               
18-445
               

               
Cow position:
               
chr10:42641766-42642203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
41, 199
               

               
Conread position:
               
18-564
               

               
Cow position:
               
chr10:21078807-21079372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 79
               

               
Conread position:
               
18-578
               

               
Cow position:
               
chr10:37307772-37308346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 12
               

               
Conread position:
               
18-601
               

               
Cow position:
               
chr10:20369901-20369316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
49-637
               

               
Cow position:
               
chr10:29109755-29109141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 152
               

               
Conread position:
               
65-601
               

               
Cow position:
               
chr10:22677199-22677732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
65-601
               

               
Cow position:
               
chr10:31524998-31525525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 118
               

               
Conread position:
               
67-418
               

               
Cow position:
               
chr10:21399447-21399079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
67-601
               

               
Cow position:
               
chr10:29011421-29010873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 184
               

               
Conread position:
               
67-601
               

               
Cow position:
               
chr10:33870516-33871082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 295
               

               
Conread position:
               
67-642
               

               
Cow position:
               
chr10:28256185-28255558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 295
               

               
Conread position:
               
69-314
               

               
Cow position:
               
chr10:1665298-1665034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 239
               

               
Conread position:
               
69-337
               

               
Cow position:
               
chr10:64146162-64146447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
21, 235
               

               
Conread position:
               
69-423
               

               
Cow position:
               
chr10:28642770-28643149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 293
               

               
Conread position:
               
69-496
               

               
Cow position:
               
chr10:62585424-62585862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
77, 43
               

               
Conread position:
               
69-514
               

               
Cow position:
               
chr10:7319602-7319161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
77, 43
               

               
Conread position:
               
69-514
               

               
Cow position:
               
chr10:38722356-38722794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
69-569
               

               
Cow position:
               
chr10:10583350-10583886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 298
               

               
Conread position:
               
69-594
               

               
Cow position:
               
chr10:21898853-21898340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
69-599
               

               
Cow position:
               
chr10:51782177-51781646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
69-599
               

               
Cow position:
               
chr10:53485978-53485447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
69-605
               

               
Cow position:
               
chr10:7897249-7896680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 311
               

               
Conread position:
               
69-642
               

               
Cow position:
               
chr10:57556102-57555485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 293
               

               
Conread position:
               
69-643
               

               
Cow position:
               
chr10:21739514-21738906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 189
               

               
Conread position:
               
69-644
               

               
Cow position:
               
chr10:19840916-19841529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 286
               

               
Conread position:
               
70-577
               

               
Cow position:
               
chr10:60361132-60361647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 207
               

               
Conread position:
               
70-638
               

               
Cow position:
               
chr10:48397864-48397274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 240
               

               
Conread position:
               
72-538
               

               
Cow position:
               
chr10:35225197-35224727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
74, 128
               

               
Conread position:
               
72-601
               

               
Cow position:
               
chr10:64221166-64220655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
73-291
               

               
Cow position:
               
chr10:55285199-55285434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
70, 185
               

               
Conread position:
               
73-308
               

               
Cow position:
               
chr10:38544688-38544444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 211
               

               
Conread position:
               
73-321
               

               
Cow position:
               
chr10:32701965-32702228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
66, 241
               

               
Conread position:
               
73-385
               

               
Cow position:
               
chr10:11684394-11684061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 198
               

               
Conread position:
               
73-407
               

               
Cow position:
               
chr10:32429968-32430307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
93, 77
               

               
Conread position:
               
73-422
               

               
Cow position:
               
chr10:20375595-20375237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 236
               

               
Conread position:
               
73-426
               

               
Cow position:
               
chr10:58597610-58597962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
73-433
               

               
Cow position:
               
chr10:28530212-28529864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
74, 137
               

               
Conread position:
               
73-482
               

               
Cow position:
               
chr10:57502047-57502472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
73-504
               

               
Cow position:
               
chr10:24311126-24310697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 116
               

               
Conread position:
               
73-504
               

               
Cow position:
               
chr10:53321157-53320710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 294
               

               
Conread position:
               
73-573
               

               
Cow position:
               
chr10:22575897-22575392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
73-599
               

               
Cow position:
               
chr10:28946722-28947254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 23
               

               
Conread position:
               
73-599
               

               
Cow position:
               
chr10:29722807-29722257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 124
               

               
Conread position:
               
73-600
               

               
Cow position:
               
chr10:16477999-16478535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
73-600
               

               
Cow position:
               
chr10:21488203-21488752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 278
               

               
Conread position:
               
73-600
               

               
Cow position:
               
chr10:24784867-24784335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 182
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr10:37771123-37771681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 284
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr10:47908171-47908724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 311
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr10:62407540-62406985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 285
               

               
Conread position:
               
73-603
               

               
Cow position:
               
chr10:19495051-19494488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
73-631
               

               
Cow position:
               
chr10:14805083-14805681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 289
               

               
Conread position:
               
73-632
               

               
Cow position:
               
chr10:41158684-41159252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 144
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr10:39815161-39814549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr10:41878160-41878774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 290
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr10:22102474-22103082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 251
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr10:29631561-29630945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 274
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr10:39040058-39039466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 243
               

               
Conread position:
               
74-352
               

               
Cow position:
               
chr10:42111659-42111952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
74-475
               

               
Cow position:
               
chr10:21637863-21637471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 38
               

               
Conread position:
               
74-514
               

               
Cow position:
               
chr10:58812513-58812062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
74-600
               

               
Cow position:
               
chr10:44708373-44707821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 306
               

               
Conread position:
               
74-602
               

               
Cow position:
               
chr10:41387708-41387187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
74-642
               

               
Cow position:
               
chr10:41568339-41568951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 288
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chr10:50135812-50136239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 279
               

               
Conread position:
               
76-388
               

               
Cow position:
               
chr10:44262590-44262275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
76-462
               

               
Cow position:
               
chr10:40398239-40398639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 220
               

               
Conread position:
               
76-581
               

               
Cow position:
               
chr10:58096785-58096275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 204
               

               
Conread position:
               
77-588
               

               
Cow position:
               
chr10:47787930-47788449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
78-354
               

               
Cow position:
               
chr10:28148957-28148678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
79-344
               

               
Cow position:
               
chr10:20118373-20118098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
89-334
               

               
Cow position:
               
chr10:6538640-6538912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
89-597
               

               
Cow position:
               
chr10:69510997-69510507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 41
               

               
Conread position:
               
96-310
               

               
Cow position:
               
chr10:8326072-8325874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
129, 46
               

               
Conread position:
               
97-602
               

               
Cow position:
               
chr10:22583748-22583255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 43
               

               
Conread position:
               
123-601
               

               
Cow position:
               
chr10:29101430-29100929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
123-601
               

               
Cow position:
               
chr10:41774319-41773820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 164
               

               
Conread position:
               
156-644
               

               
Cow position:
               
chr10:46196407-46196898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
157-642
               

               
Cow position:
               
chr10:10172068-10172585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 193
               

               
Conread position:
               
157-642
               

               
Cow position:
               
chr10:25652095-25651579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 192
               

               
Conread position:
               
158-575
               

               
Cow position:
               
chr10:44102476-44102908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
227, 198
               

               
Conread position:
               
158-631
               

               
Cow position:
               
chr10:68160301-68159802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 108
               

               
Conread position:
               
161-504
               

               
Cow position:
               
chr10:40462423-40462766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
163-601
               

               
Cow position:
               
chr10:32317123-32317569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 130
               

               
Conread position:
               
170-642
               

               
Cow position:
               
chr10:21517618-21517164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 21
               

               
Conread position:
               
171-601
               

               
Cow position:
               
chr10:14853211-14853648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
171-616
               

               
Cow position:
               
chr10:2119653-2119198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
174-643
               

               
Cow position:
               
chr10:8291399-8291890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
179-578
               

               
Cow position:
               
chr10:19706280-19705852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 157
               

               
Conread position:
               
181-599
               

               
Cow position:
               
chr10:22346320-22346754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 182
               

               
Conread position:
               
187-585
               

               
Cow position:
               
chr10:58376933-58376533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
197-600
               

               
Cow position:
               
chr10:56394649-56394240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
198-354
               

               
Cow position:
               
chr10:37491286-37491131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
199-580
               

               
Cow position:
               
chr10:20537752-20538126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 24
               

               
Conread position:
               
199-603
               

               
Cow position:
               
chr10:41634795-41635190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
203-463
               

               
Cow position:
               
chr10:50614924-50615180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
179, 11
               

               
Conread position:
               
220-614
               

               
Cow position:
               
chr10:39439554-39439962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 121
               

               
Conread position:
               
223-642
               

               
Cow position:
               
chr10:25339512-25339946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 122
               

               
Conread position:
               
244-602
               

               
Cow position:
               
chr10:10242369-10242730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
256-434
               

               
Cow position:
               
chr10:36512022-36512200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
256-643
               

               
Cow position:
               
chr10:16927103-16927520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 109
               

               
Conread position:
               
261-593
               

               
Cow position:
               
chr10:22909018-22908676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 77
               

               
Conread position:
               
276-608
               

               
Cow position:
               
chr10:38544430-38544095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 71
               

               
Conread position:
               
287-489
               

               
Cow position:
               
chr10:5256594-5256387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
295-571
               

               
Cow position:
               
chr10:39444801-39444512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
303-643
               

               
Cow position:
               
chr10:8325615-8325263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
202, 39
               

               
Conread position:
               
308-638
               

               
Cow position:
               
chr10:22644493-22644843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
324-643
               

               
Cow position:
               
chr10:23409731-23409400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 18
               

               
Conread position:
               
327-643
               

               
Cow position:
               
chr10:32702267-32702606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
336-564
               

               
Cow position:
               
chr10:46183965-46184191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
342-601
               

               
Cow position:
               
chr10:31539656-31539926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 227
               

               
Conread position:
               
342-643
               

               
Cow position:
               
chr10:41151209-41150885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
350-566
               

               
Cow position:
               
chr10:19513151-19513369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
350-642
               

               
Cow position:
               
chr10:19143083-19142767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
355-603
               

               
Cow position:
               
chr10:42114062-42114310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
356-600
               

               
Cow position:
               
chr10:58598051-58598308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
365-642
               

               
Cow position:
               
chr10:40150638-40150348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
388-601
               

               
Cow position:
               
chr10:29732315-29732536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 144
               

               
Conread position:
               
389-644
               

               
Cow position:
               
chr10:22343052-22343314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
392-642
               

               
Cow position:
               
chr10:22619505-22619242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 70
               

               
Conread position:
               
396-642
               

               
Cow position:
               
chr10:34666160-34665891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
397-637
               

               
Cow position:
               
chr10:20515016-20515274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
399-643
               

               
Cow position:
               
chr10:32828458-32828722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
404-504
               

               
Cow position:
               
chr10:1664983-1664880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
421-571
               

               
Cow position:
               
chr10:20374955-20374798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
424-642
               

               
Cow position:
               
chr10:6556146-6556382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
426-588
               

               
Cow position:
               
chr10:36512424-36512595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
435-601
               

               
Cow position:
               
chr10:14844382-14844555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
439-601
               

               
Cow position:
               
chr10:53981520-53981682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
450-643
               

               
Cow position:
               
chr10:39209391-39209599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
452-601
               

               
Cow position:
               
chr10:48375974-48375819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 133
               

               
Conread position:
               
502-601
               

               
Cow position:
               
chr10:21451116-21451215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-642
               

               
Cow position:
               
chr11:61400277-61399615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 207
               

               
Conread position:
               
7-643
               

               
Cow position:
               
chr11:23880833-23881511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
16-166
               

               
Cow position:
               
chr11:44490802-44490648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
16-173
               

               
Cow position:
               
chr11:28064905-28065071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
16-239
               

               
Cow position:
               
chr11:4034534-4034290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
16-314
               

               
Cow position:
               
chr11:74424408-74424733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 306
               

               
Conread position:
               
16-328
               

               
Cow position:
               
chr11:9601502-9601178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
16-414
               

               
Cow position:
               
chr11:49558866-49558448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
16-416
               

               
Cow position:
               
chr11:21899031-21898617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
16-579
               

               
Cow position:
               
chr11:13065153-13064571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
16-591
               

               
Cow position:
               
chr11:3856033-3856625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 345
               

               
Conread position:
               
16-601
               

               
Cow position:
               
chr11:30253047-30253660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 276
               

               
Conread position:
               
16-601
               

               
Cow position:
               
chr11:40775185-40774591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 294
               

               
Conread position:
               
16-637
               

               
Cow position:
               
chr11:87142392-87143065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
16-642
               

               
Cow position:
               
chr11:3493806-3494479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 349
               

               
Conread position:
               
16-643
               

               
Cow position:
               
chr11:26070237-26069556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
16-643
               

               
Cow position:
               
chr11:58135208-58135878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
16-644
               

               
Cow position:
               
chr11:30123027-30122374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 356
               

               
Conread position:
               
17-392
               

               
Cow position:
               
chr11:4269589-4269187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 351
               

               
Conread position:
               
17-423
               

               
Cow position:
               
chr11:44156434-44156013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 244
               

               
Conread position:
               
17-436
               

               
Cow position:
               
chr11:44252610-44253068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 300
               

               
Conread position:
               
17-601
               

               
Cow position:
               
chr11:41169881-41169256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 348
               

               
Conread position:
               
17-614
               

               
Cow position:
               
chr11:29667793-29667145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 563
               

               
Conread position:
               
17-626
               

               
Cow position:
               
chr11:71330408-71331060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 343
               

               
Conread position:
               
17-632
               

               
Cow position:
               
chr11:26124114-26123440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 353
               

               
Conread position:
               
17-641
               

               
Cow position:
               
chr11:38834622-38833960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 184
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr11:10848263-10848928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 352
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr11:12357601-12356912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 381
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr11:24394126-24394803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 240
               

               
Conread position:
               
17-643
               

               
Cow position:
               
chr11:72310221-72309550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 212
               

               
Conread position:
               
18-426
               

               
Cow position:
               
chr11:28053801-28053390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
18-601
               

               
Cow position:
               
chr11:20733422-20732797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 370
               

               
Conread position:
               
18-643
               

               
Cow position:
               
chr11:66729909-66730575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
19-314
               

               
Cow position:
               
chr11:21444307-21444599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
19-643
               

               
Cow position:
               
chr11:44582520-44581853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 344
               

               
Conread position:
               
20-421
               

               
Cow position:
               
chr11:81851892-81851495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
20-599
               

               
Cow position:
               
chr11:31926980-31927590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
24-642
               

               
Cow position:
               
chr11:47759457-47758789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
41-379
               

               
Cow position:
               
chr11:35504358-35504010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
49-573
               

               
Cow position:
               
chr11:26074114-26073561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 333
               

               
Conread position:
               
53-385
               

               
Cow position:
               
chr11:26564232-26563899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
115, 12
               

               
Conread position:
               
66-601
               

               
Cow position:
               
chr11:10883177-10883724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
67-290
               

               
Cow position:
               
chr11:24336334-24336107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
67-601
               

               
Cow position:
               
chr11:50026876-50026311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
67-601
               

               
Cow position:
               
chr11:67451366-67451929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
67-603
               

               
Cow position:
               
chr11:64355694-64356238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 54
               

               
Conread position:
               
67-643
               

               
Cow position:
               
chr11:1489279-1488688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 28
               

               
Conread position:
               
68-600
               

               
Cow position:
               
chr11:2727609-2728155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
69-468
               

               
Cow position:
               
chr11:14728174-14727766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
99, 250
               

               
Conread position:
               
69-468
               

               
Cow position:
               
chr11:29613120-29612698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 201
               

               
Conread position:
               
69-601
               

               
Cow position:
               
chr11:39804612-39805171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 60
               

               
Conread position:
               
69-601
               

               
Cow position:
               
chr11:57627179-57626616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 290
               

               
Conread position:
               
69-632
               

               
Cow position:
               
chr11:17106809-17106204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 293
               

               
Conread position:
               
69-642
               

               
Cow position:
               
chr11:44517991-44517376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
69-643
               

               
Cow position:
               
chr11:67845697-67845082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 266
               

               
Conread position:
               
69-644
               

               
Cow position:
               
chr11:32452701-32453321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 313
               

               
Conread position:
               
72-601
               

               
Cow position:
               
chr11:4062997-4062476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
72-602
               

               
Cow position:
               
chr11:35254378-35253863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
73-229
               

               
Cow position:
               
chr11:37476104-37475937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 155
               

               
Conread position:
               
73-392
               

               
Cow position:
               
chr11:36324272-36324590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 69
               

               
Conread position:
               
73-422
               

               
Cow position:
               
chr11:54216381-54216012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 286
               

               
Conread position:
               
73-477
               

               
Cow position:
               
chr11:9975016-9974601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
77, 253
               

               
Conread position:
               
73-499
               

               
Cow position:
               
chr11:1495153-1494716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 46
               

               
Conread position:
               
73-504
               

               
Cow position:
               
chr11:80473396-80472957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 82
               

               
Conread position:
               
73-564
               

               
Cow position:
               
chr11:42311563-42311051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 268
               

               
Conread position:
               
73-581
               

               
Cow position:
               
chr11:9224668-9224171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 57
               

               
Conread position:
               
73-584
               

               
Cow position:
               
chr11:18070060-18069523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
73-599
               

               
Cow position:
               
chr11:18887730-18888254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:9156270-9155721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 195
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:17547040-17547594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 284
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:19063195-19062640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:28228888-28228331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 282
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:28391846-28392402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 199
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:35264753-35265292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:53286290-53285736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 212
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:63654456-63653896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 288
               

               
Conread position:
               
73-601
               

               
Cow position:
               
chr11:75554121-75553579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
9, 229
               

               
Conread position:
               
73-642
               

               
Cow position:
               
chr11:43513753-43513140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr11:4026732-4026122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr11:19101609-19101000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr11:26548403-26549015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 308
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr11:73134167-73134786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 299
               

               
Conread position:
               
73-643
               

               
Cow position:
               
chr11:85392948-85392344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 177
               

               
Conread position:
               
73-644
               

               
Cow position:
               
chr11:15943468-15942891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 101
               

               
Conread position:
               
74-603
               

               
Cow position:
               
chr11:26784138-26784690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 281
               

               
Conread position:
               
74-608
               

               
Cow position:
               
chr11:63275521-63274972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
75-315
               

               
Cow position:
               
chr11:9215892-9215655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
75-387
               

               
Cow position:
               
chr11:21928306-21927989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 93
               

               
Conread position:
               
75-475
               

               
Cow position:
               
chr11:6682732-6683151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 239
               

               
Conread position:
               
75-571
               

               
Cow position:
               
chr11:11989012-11989536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 283
               

               
Conread position:
               
75-643
               

               
Cow position:
               
chr11:67154568-67155166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 234
               

               
Conread position:
               
77-453
               

               
Cow position:
               
chr11:30278477-30278868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
52, 75
               

               
Conread position:
               
77-601
               

               
Cow position:
               
chr11:52420285-52420828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 216
               

               
Conread position:
               
77-608
               

               
Cow position:
               
chr11:9733796-9733239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 280
               

               
Conread position:
               
77-644
               

               
Cow position:
               
chr11:32685778-32686349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
79-338
               

               
Cow position:
               
chr11:28421020-28421278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
88-642
               

               
Cow position:
               
chr11:27657338-27657927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 85
               

               
Conread position:
               
89-636
               

               
Cow position:
               
chr11:76373104-76372549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
90-587
               

               
Cow position:
               
chr11:9204941-9204440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
97-296
               

               
Cow position:
               
chr11:4056595-4056383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
120-479
               

               
Cow position:
               
chr11:25865911-25865537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 225
               

               
Conread position:
               
123-602
               

               
Cow position:
               
chr11:28740370-28739871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
59, 167
               

               
Conread position:
               
125-336
               

               
Cow position:
               
chr11:31932374-31932606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
126-601
               

               
Cow position:
               
chr11:49239028-49238520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 240
               
130-514UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr11:40507165-40506776 (view  custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 81
               
130-601UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:23126699-23126234 (view  custom track)

               
               
               
Alignm length:
492

               
               
               
Alignm identity:
336

               
               
               
Alignm E-value:
1.96182e-44

               
               
               
Alignm gaps (pig, cow):
19, 140
139-643UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:53431079-53430543 (view  custom track)

               
               
               
Alignm length:
545

               
               
               
Alignm identity:
388

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
61, 19

               
               
               Conread position:148-601
               
               
               Cow position:chr11:31163659-31164114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:153-497
               
               
               Cow position:chr11:37285573-37285918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:161-433
               
               
               Cow position:chr11:54484299-54484023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:161-575
               
               
               Cow position:chr11:50949357-50948915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 128

               
               
               Conread position:161-601
               
               
               Cow position:chr11:3261481-3261924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 188

               
               
               Conread position:162-602
               
               
               Cow position:chr11:73462162-73461701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:164-614
               
               
               Cow position:chr11:23249485-23249020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:166-599
               
               
               Cow position:chr11:27669007-27668560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 52

               
               
               Conread position:166-602
               
               
               Cow position:chr11:29232001-29231544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 227

               
               
               Conread position:167-601
               
               
               Cow position:chr11:2833312-2833725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 168

               
               
               Conread position:167-626
               
               
               Cow position:chr11:54254432-54254916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:318
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 175

               
               
               Conread position:170-601
               
               
               Cow position:chr11:10056496-10056936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:171-475
               
               
               Cow position:chr11:20511605-20511908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 162

               
               
               Conread position:171-600
               
               
               Cow position:chr11:49039389-49038945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:171-601
               
               
               Cow position:chr11:20506229-20506693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:319
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):42, 162

               
               
               Conread position:177-562
               
               
               Cow position:chr11:30208129-30208526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:209-586
               
               
               Cow position:chr11:54467208-54467565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:216-503
               
               
               Cow position:chr11:40329948-40329652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 150

               
               
               Conread position:216-608
               
               
               Cow position:chr11:35894868-35894462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:218-603
               
               
               Cow position:chr11:21475165-21475559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:220-583
               
               
               Cow position:chr11:31754999-31754643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:220-621
               
               
               Cow position:chr11:22028077-22027680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:221-600
               
               
               Cow position:chr11:12387471-12387848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:222-417
               
               
               Cow position:chr11:81341222-81341030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:223-514
               
               
               Cow position:chr11:5908484-5908189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:232-642
               
               
               Cow position:chr11:17119288-17118859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 110

               
               
               Conread position:241-585
               
               
               Cow position:chr11:9302372-9302018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):13, 234

               
               
               Conread position:241-642
               
               
               Cow position:chr11:50836602-50836178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 10

               
               
               Conread position:244-644
               
               
               Cow position:chr11:3104380-3103958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):145, 163

               
               
               Conread position:251-642
               
               
               Cow position:chr11:15986324-15986732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:256-642
               
               
               Cow position:chr11:47738460-47738058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:261-601
               
               
               Cow position:chr11:17281395-17281042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:273-502
               
               
               Cow position:chr11:52808456-52808683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:280-603
               
               
               Cow position:chr11:25393297-25393628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:285-602
               
               
               Cow position:chr11:4034287-4033972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:288-602
               
               
               Cow position:chr11:13048653-13048330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:307-489
               
               
               Cow position:chr11:9215377-9215191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:315-643
               
               
               Cow position:chr11:4055187-4054847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:327-569
               
               
               Cow position:chr11:41234165-41234419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:327-601
               
               
               Cow position:chr11:11590117-11590403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:331-642
               
               
               Cow position:chr11:86876730-86876394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:351-501
               
               
               Cow position:chr11:12372663-12372507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:351-603
               
               
               Cow position:chr11:37802238-37802501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:351-604
               
               
               Cow position:chr11:31863258-31863526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:351-614
               
               
               Cow position:chr11:7117584-7117861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:351-643
               
               
               Cow position:chr11:32079614-32079298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:360-503
               
               
               Cow position:chr11:33976893-33976745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:360-603
               
               
               Cow position:chr11:49552970-49552714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):33, 241

               
               
               Conread position:368-601
               
               
               Cow position:chr11:63647251-63647498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:373-642
               
               
               Cow position:chr11:10957018-10957305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 24

               
               
               Conread position:397-642
               
               
               Cow position:chr11:34018226-34018494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):19, 169

               
               
               Conread position:410-643
               
               
               Cow position:chr11:44155761-44155511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 84

               
               
               Conread position:419-643
               
               
               Cow position:chr11:4268930-4268688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:430-643
               
               
               Cow position:chr11:40405794-40405563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:432-644
               
               
               Cow position:chr11:11578479-11578252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):72, 139

               
               
               Conread position:436-642
               
               
               Cow position:chr11:44041972-44042197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:448-625
               
               
               Cow position:chr11:21470090-21470274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:453-643
               
               
               Cow position:chr11:12318745-12318537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:459-602
               
               
               Cow position:chr11:47728404-47728254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:474-601
               
               
               Cow position:chr11:42371115-42371249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-601
               
               
               Cow position:chr12:8139032-8138435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:406
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):6, 31

               
               
               Conread position:12-642
               
               
               Cow position:chr12:35345645-35346302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:12-643
               
               
               Cow position:chr12:28005004-28005648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:16-643
               
               
               Cow position:chr12:48471779-48471121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 126

               
               
               Conread position:17-423
               
               
               Cow position:chr12:25099973-25099533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 195

               
               
               Conread position:17-643
               
               
               Cow position:chr12:6405542-6404862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 314

               
               
               Conread position:17-643
               
               
               Cow position:chr12:11099322-11100011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 354

               
               
               Conread position:17-643
               
               
               Cow position:chr12:27854864-27854188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr12:27931804-27931131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 248

               
               
               Conread position:17-643
               
               
               Cow position:chr12:42858437-42857758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-644
               
               
               Cow position:chr12:8676996-8676312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 251

               
               
               Conread position:18-601
               
               
               Cow position:chr12:18465066-18465604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:385
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):151, 39

               
               
               Conread position:19-600
               
               
               Cow position:chr12:19222125-19222695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:383
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:24-493
               
               
               Cow position:chr12:21199089-21199589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 307

               
               
               Conread position:52-593
               
               
               Cow position:chr12:7863728-7863162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:357
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 17

               
               
               Conread position:67-601
               
               
               Cow position:chr12:1776808-1776241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 264

               
               
               Conread position:67-601
               
               
               Cow position:chr12:32654706-32655274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 303

               
               
               Conread position:69-302
               
               
               Cow position:chr12:21387082-21386830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):74, 246

               
               
               Conread position:69-362
               
               
               Cow position:chr12:31202328-31202016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-364
               
               
               Cow position:chr12:349563-349876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 125

               
               
               Conread position:69-423
               
               
               Cow position:chr12:11580974-11581307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:69-601
               
               
               Cow position:chr12:42607105-42606527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 189

               
               
               Conread position:69-626
               
               
               Cow position:chr12:20996921-20996341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 285

               
               
               Conread position:69-634
               
               
               Cow position:chr12:18993498-18992915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:381
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 154

               
               
               Conread position:69-640
               
               
               Cow position:chr12:3362100-3362707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 291

               
               
               Conread position:69-644
               
               
               Cow position:chr12:21482289-21482864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:73-421
               
               
               Cow position:chr12:600199-599842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:73-435
               
               
               Cow position:chr12:33119323-33119714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:73-482
               
               
               Cow position:chr12:20843782-20844189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 172

               
               
               Conread position:73-571
               
               
               Cow position:chr12:24977652-24977149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:351
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:73-601
               
               
               Cow position:chr12:1403657-1404221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 295

               
               
               Conread position:73-608
               
               
               Cow position:chr12:23141028-23140440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 153

               
               
               Conread position:73-637
               
               
               Cow position:chr12:5144852-5145427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:73-642
               
               
               Cow position:chr12:1888395-1887791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 289

               
               
               Conread position:74-601
               
               
               Cow position:chr12:14661184-14660626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 287

               
               
               Conread position:77-573
               
               
               Cow position:chr12:21942910-21943432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 211

               
               
               Conread position:77-642
               
               
               Cow position:chr12:37560178-37560780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 304

               
               
               Conread position:78-388
               
               
               Cow position:chr12:3209124-3209445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 272

               
               
               Conread position:84-602
               
               
               Cow position:chr12:19870091-19870608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:115-601
               
               
               Cow position:chr12:21209869-21210387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 248

               
               
               Conread position:130-387
               
               
               Cow position:chr12:6861270-6861526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:142-599
               
               
               Cow position:chr12:24433847-24433364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 216

               
               
               Conread position:158-642
               
               
               Cow position:chr12:21429270-21429785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 191

               
               
               Conread position:161-596
               
               
               Cow position:chr12:34174382-34174830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 188

               
               
               Conread position:164-643
               
               
               Cow position:chr12:22204445-22203936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:188-361
               
               
               Cow position:chr12:20461775-20461948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:209-600
               
               
               Cow position:chr12:29445071-29445452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:216-601
               
               
               Cow position:chr12:21092384-21092003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 25

               
               
               Conread position:216-642
               
               
               Cow position:chr12:24994638-24994186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:244-643
               
               
               Cow position:chr12:17967167-17967583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 94

               
               
               Conread position:254-643
               
               
               Cow position:chr12:22568390-22567980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 72

               
               
               Conread position:266-432
               
               
               Cow position:chr12:11192993-11193159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):154, 90

               
               
               Conread position:266-432
               
               
               Cow position:chr12:11204264-11204430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):154, 90

               
               
               Conread position:266-601
               
               
               Cow position:chr12:21253214-21252862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:277-601
               
               
               Cow position:chr12:30677025-30677361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:308-601
               
               
               Cow position:chr12:35634088-35633798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:328-601
               
               
               Cow position:chr12:30685184-30685457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:328-643
               
               
               Cow position:chr12:25262072-25261743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):88, 200

               
               
               Conread position:337-614
               
               
               Cow position:chr12:43913286-43913575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:342-642
               
               
               Cow position:chr12:34174794-34175120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:349-632
               
               
               Cow position:chr12:20461771-20461464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:355-601
               
               
               Cow position:chr12:3209438-3209693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:360-643
               
               
               Cow position:chr12:25099000-25098699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:385-628
               
               
               Cow position:chr12:15950309-15950058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):35, 192

               
               
               Conread position:390-642
               
               
               Cow position:chr12:33042863-33043129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 226

               
               
               Conread position:396-601
               
               
               Cow position:chr12:39038957-39038744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:399-632
               
               
               Cow position:chr12:756699-756938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):108, 81

               
               
               Conread position:419-573
               
               
               Cow position:chr12:11581536-11581695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 140

               
               
               Conread position:419-601
               
               
               Cow position:chr12:21897358-21897545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:419-601
               
               
               Cow position:chr12:22519445-22519256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:440-632
               
               
               Cow position:chr12:21428037-21427827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr13:43982237-43981956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 202

               
               
               Conread position:1-603
               
               
               Cow position:chr13:11794182-11793572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:7-264
               
               
               Cow position:chr13:30304164-30304450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 276

               
               
               Conread position:7-580
               
               
               Cow position:chr13:30276440-30275853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:375
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:7-599
               
               
               Cow position:chr13:34049613-34050208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:403
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 257

               
               
               Conread position:7-643
               
               
               Cow position:chr13:6667261-6666582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 346

               
               
               Conread position:12-641
               
               
               Cow position:chr13:34938327-34938992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 115

               
               
               Conread position:16-344
               
               
               Cow position:chr13:21908214-21907885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 145

               
               
               Conread position:16-566
               
               
               Cow position:chr13:34324675-34324109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:16-601
               
               
               Cow position:chr13:11797839-11797203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 311

               
               
               Conread position:16-601
               
               
               Cow position:chr13:43590210-43590814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 200

               
               
               Conread position:16-603
               
               
               Cow position:chr13:32984463-32983838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 352

               
               
               Conread position:17-216
               
               
               Cow position:chr13:1592273-1592059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:17-354
               
               
               Cow position:chr13:15519625-15519282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:17-387
               
               
               Cow position:chr13:15923498-15923103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 349

               
               
               Conread position:17-423
               
               
               Cow position:chr13:32546271-32546696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:17-440
               
               
               Cow position:chr13:5625106-5624656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 298

               
               
               Conread position:17-504
               
               
               Cow position:chr13:15543422-15543940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 283

               
               
               Conread position:17-591
               
               
               Cow position:chr13:4484676-4485277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:17-638
               
               
               Cow position:chr13:3653438-3652756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 355

               
               
               Conread position:17-643
               
               
               Cow position:chr13:4942264-4942942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr13:13900749-13901422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 124

               
               
               Conread position:17-643
               
               
               Cow position:chr13:31611426-31610760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr13:35758164-35758837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:18-333
               
               
               Cow position:chr13:57024582-57024909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:18-422
               
               
               Cow position:chr13:8796909-8796498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:18-636
               
               
               Cow position:chr13:34019832-34019208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:392
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:18-642
               
               
               Cow position:chr13:50661184-50661808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 203

               
               
               Conread position:19-375
               
               
               Cow position:chr13:30654496-30654122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):120, 67

               
               
               Conread position:24-644
               
               
               Cow position:chr13:48358535-48359183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 199

               
               
               Conread position:64-601
               
               
               Cow position:chr13:44652881-44652350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 189

               
               
               Conread position:67-543
               
               
               Cow position:chr13:31555802-31555311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:67-601
               
               
               Cow position:chr13:31732949-31732391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:68-621
               
               
               Cow position:chr13:14177902-14177328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 221

               
               
               Conread position:69-340
               
               
               Cow position:chr13:17998499-17998790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:69-504
               
               
               Cow position:chr13:28860105-28860563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 289

               
               
               Conread position:69-514
               
               
               Cow position:chr13:49974606-49975076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-554
               
               
               Cow position:chr13:2387866-2387348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 301

               
               
               Conread position:69-642
               
               
               Cow position:chr13:21697194-21697821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 303

               
               
               Conread position:69-642
               
               
               Cow position:chr13:31729953-31729348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 294

               
               
               Conread position:69-644
               
               
               Cow position:chr13:678691-679305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-647
               
               
               Cow position:chr13:17309410-17310013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:70-504
               
               
               Cow position:chr13:25692620-25693074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 49

               
               
               Conread position:70-601
               
               
               Cow position:chr13:26590336-26589818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:346
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:73-331
               
               
               Cow position:chr13:47229054-47228775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:73-332
               
               
               Cow position:chr13:28670270-28670011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:73-392
               
               
               Cow position:chr13:23002062-23001731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 240

               
               
               Conread position:73-474
               
               
               Cow position:chr13:30239263-30239697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 311

               
               
               Conread position:73-494
               
               
               Cow position:chr13:34909077-34908649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 230

               
               
               Conread position:73-601
               
               
               Cow position:chr13:5627885-5627346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:73-601
               
               
               Cow position:chr13:13325874-13326430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 284

               
               
               Conread position:73-602
               
               
               Cow position:chr13:37835379-37834821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:368
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 51

               
               
               Conread position:73-614
               
               
               Cow position:chr13:50110398-50110975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 288

               
               
               Conread position:73-642
               
               
               Cow position:chr13:21839248-21838650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 246

               
               
               Conread position:73-643
               
               
               Cow position:chr13:9045712-9046305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 244

               
               
               Conread position:73-643
               
               
               Cow position:chr13:32924178-32923577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 67

               
               
               Conread position:73-643
               
               
               Cow position:chr13:34041392-34040776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 288

               
               
               Conread position:73-643
               
               
               Cow position:chr13:34342851-34343463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 288

               
               
               Conread position:73-644
               
               
               Cow position:chr13:15450174-15449606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 161

               
               
               Conread position:75-594
               
               
               Cow position:chr13:61052073-61051555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:347
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:75-644
               
               
               Cow position:chr13:14402149-14401551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 176

               
               
               Conread position:76-504
               
               
               Cow position:chr13:17330813-17330382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:76-601
               
               
               Cow position:chr13:34030567-34031100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 43

               
               
               Conread position:76-626
               
               
               Cow position:chr13:26845235-26845748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:78-642
               
               
               Cow position:chr13:31507866-31508463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 277

               
               
               Conread position:79-642
               
               
               Cow position:chr13:6358074-6358681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 280

               
               
               Conread position:89-634
               
               
               Cow position:chr13:3482859-3482293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 240

               
               
               Conread position:102-550
               
               
               Cow position:chr13:60699593-60699137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 122

               
               
               Conread position:106-601
               
               
               Cow position:chr13:5501021-5500495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 245

               
               
               Conread position:108-588
               
               
               Cow position:chr13:19441443-19441923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 155

               
               
               Conread position:126-601
               
               
               Cow position:chr13:43982062-43981581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:145-644
               
               
               Cow position:chr13:33335278-33334763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:146-601
               
               
               Cow position:chr13:44752012-44752464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):195, 17

               
               
               Conread position:147-603
               
               
               Cow position:chr13:11071223-11070787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:157-601
               
               
               Cow position:chr13:42090646-42090189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:157-603
               
               
               Cow position:chr13:42217640-42217176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 42

               
               
               Conread position:159-585
               
               
               Cow position:chr13:60468469-60468915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 190

               
               
               Conread position:161-489
               
               
               Cow position:chr13:21720932-21721257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:161-586
               
               
               Cow position:chr13:56833123-56833548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:161-643
               
               
               Cow position:chr13:60648757-60648250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:164-501
               
               
               Cow position:chr13:36958540-36958206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:167-503
               
               
               Cow position:chr13:19123955-19123632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:174-601
               
               
               Cow position:chr13:16816161-16816585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:176-614
               
               
               Cow position:chr13:47955401-47955850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:301
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:180-642
               
               
               Cow position:chr13:16253452-16252960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:189-643
               
               
               Cow position:chr13:47575160-47575650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:190-642
               
               
               Cow position:chr13:33524877-33524399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:194-469
               
               
               Cow position:chr13:61083514-61083788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 169

               
               
               Conread position:194-626
               
               
               Cow position:chr13:11141829-11141382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:194-642
               
               
               Cow position:chr13:50193318-50192841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 156

               
               
               Conread position:197-601
               
               
               Cow position:chr13:46527536-46527947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:202-572
               
               
               Cow position:chr13:20541171-20540779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:221-489
               
               
               Cow position:chr13:14858684-14858415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:222-475
               
               
               Cow position:chr13:27599261-27599008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:223-642
               
               
               Cow position:chr13:34377743-34377337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:240-601
               
               
               Cow position:chr13:60423884-60424252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 120

               
               
               Conread position:253-643
               
               
               Cow position:chr13:32736026-32735635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 94

               
               
               Conread position:256-600
               
               
               Cow position:chr13:30278720-30279063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:259-601
               
               
               Cow position:chr13:49495026-49494674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):117, 136

               
               
               Conread position:262-601
               
               
               Cow position:chr13:14186153-14186504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 99

               
               
               Conread position:273-642
               
               
               Cow position:chr13:728382-728790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:279-601
               
               
               Cow position:chr13:3534710-3534386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):141, 13

               
               
               Conread position:318-601
               
               
               Cow position:chr13:11388207-11388501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:350-601
               
               
               Cow position:chr13:30654185-30653922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:358-643
               
               
               Cow position:chr13:9298695-9299003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:362-602
               
               
               Cow position:chr13:7725190-7724947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 202

               
               
               Conread position:362-643
               
               
               Cow position:chr13:30304448-30304754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:389-601
               
               
               Cow position:chr13:34869254-34869476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:391-602
               
               
               Cow position:chr13:11763346-11763128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:399-642
               
               
               Cow position:chr13:5624451-5624192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:419-629
               
               
               Cow position:chr13:36348821-36348597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 198

               
               
               Conread position:426-642
               
               
               Cow position:chr13:32547827-32548043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):78, 173

               
               
               Conread position:462-642
               
               
               Cow position:chr13:3760271-3760072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-434
               
               
               Cow position:chr14:40341798-40342262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:7-383
               
               
               Cow position:chr14:46391785-46391393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 161

               
               
               Conread position:7-450
               
               
               Cow position:chr14:44689816-44690286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 360

               
               
               Conread position:7-485
               
               
               Cow position:chr14:13274356-13274862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:7-601
               
               
               Cow position:chr14:48601587-48600973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:7-642
               
               
               Cow position:chr14:13863344-13862670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 353

               
               
               Conread position:12-378
               
               
               Cow position:chr14:40168981-40168597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:12-643
               
               
               Cow position:chr14:20783206-20783899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 370

               
               
               Conread position:16-573
               
               
               Cow position:chr14:45207061-45207631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:16-601
               
               
               Cow position:chr14:7473115-7473731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:16-601
               
               
               Cow position:chr14:45678324-45677705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 254

               
               
               Conread position:16-608
               
               
               Cow position:chr14:13303714-13304341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 193

               
               
               Conread position:16-638
               
               
               Cow position:chr14:46466439-46467084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 143

               
               
               Conread position:16-642
               
               
               Cow position:chr14:12611190-12611830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:16-643
               
               
               Cow position:chr14:5529828-5530490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 30

               
               
               Conread position:16-643
               
               
               Cow position:chr14:37224946-37225588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:17-269
               
               
               Cow position:chr14:13620385-13620106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:17-276
               
               
               Cow position:chr14:12742312-12742028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 269

               
               
               Conread position:17-392
               
               
               Cow position:chr14:45081810-45082211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 319

               
               
               Conread position:17-643
               
               
               Cow position:chr14:17000303-16999619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr14:45710967-45710306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:17-644
               
               
               Cow position:chr14:16272536-16271894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 349

               
               
               Conread position:18-601
               
               
               Cow position:chr14:16918961-16918342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 371

               
               
               Conread position:18-642
               
               
               Cow position:chr14:43558993-43559668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 276

               
               
               Conread position:18-643
               
               
               Cow position:chr14:5513694-5514359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 345

               
               
               Conread position:41-586
               
               
               Cow position:chr14:13833942-13834504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:374
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:41-586
               
               
               Cow position:chr14:30661269-30660706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:372
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:46-632
               
               
               Cow position:chr14:44255961-44255369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:64-371
               
               
               Cow position:chr14:2951748-2951439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):53, 67

               
               
               Conread position:65-642
               
               
               Cow position:chr14:751378-751997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 294

               
               
               Conread position:67-421
               
               
               Cow position:chr14:35384999-35384640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 75

               
               
               Conread position:67-643
               
               
               Cow position:chr14:22030630-22030020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 286

               
               
               Conread position:69-418
               
               
               Cow position:chr14:17490642-17490273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-501
               
               
               Cow position:chr14:10147690-10148147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-601
               
               
               Cow position:chr14:18105263-18105801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:69-632
               
               
               Cow position:chr14:29046868-29046259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 321

               
               
               Conread position:69-642
               
               
               Cow position:chr14:45671230-45670599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 303

               
               
               Conread position:70-514
               
               
               Cow position:chr14:33402509-33402966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 220

               
               
               Conread position:70-538
               
               
               Cow position:chr14:34042216-34041766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:70-580
               
               
               Cow position:chr14:12124366-12123824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 289

               
               
               Conread position:70-601
               
               
               Cow position:chr14:45086059-45086599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 276

               
               
               Conread position:70-642
               
               
               Cow position:chr14:17760062-17759467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 236

               
               
               Conread position:72-319
               
               
               Cow position:chr14:13462339-13462607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):74, 129

               
               
               Conread position:73-260
               
               
               Cow position:chr14:12899917-12900123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:73-338
               
               
               Cow position:chr14:34861288-34861552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:73-446
               
               
               Cow position:chr14:50111615-50112021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 313

               
               
               Conread position:73-477
               
               
               Cow position:chr14:50139384-50139816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 306

               
               
               Conread position:73-482
               
               
               Cow position:chr14:33689030-33689443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 266

               
               
               Conread position:73-510
               
               
               Cow position:chr14:44227196-44227659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 147

               
               
               Conread position:73-562
               
               
               Cow position:chr14:21744921-21745418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:344
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:73-577
               
               
               Cow position:chr14:38814660-38814135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:349
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:73-588
               
               
               Cow position:chr14:43555800-43556347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:73-601
               
               
               Cow position:chr14:5074774-5075321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 208

               
               
               Conread position:73-601
               
               
               Cow position:chr14:27978181-27978735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 283

               
               
               Conread position:73-601
               
               
               Cow position:chr14:45028171-45027623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:73-601
               
               
               Cow position:chr14:48826107-48826654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 182

               
               
               Conread position:73-603
               
               
               Cow position:chr14:24996763-24996236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:73-603
               
               
               Cow position:chr14:25692770-25693321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 186

               
               
               Conread position:73-604
               
               
               Cow position:chr14:2295110-2295650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 36

               
               
               Conread position:73-635
               
               
               Cow position:chr14:37455092-37454522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 92

               
               
               Conread position:73-638
               
               
               Cow position:chr14:15275029-15274414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 296

               
               
               Conread position:73-642
               
               
               Cow position:chr14:13579214-13579789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 275

               
               
               Conread position:73-642
               
               
               Cow position:chr14:17687325-17687927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:73-642
               
               
               Cow position:chr14:23256534-23255929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 297

               
               
               Conread position:73-642
               
               
               Cow position:chr14:29775260-29774690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:73-643
               
               
               Cow position:chr14:190865-191482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 221

               
               
               Conread position:73-643
               
               
               Cow position:chr14:13779769-13780384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:73-643
               
               
               Cow position:chr14:19327441-19326830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 288

               
               
               Conread position:74-504
               
               
               Cow position:chr14:23932434-23932864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 99

               
               
               Conread position:74-586
               
               
               Cow position:chr14:38147826-38148353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 242

               
               
               Conread position:74-636
               
               
               Cow position:chr14:44552674-44553256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:74-642
               
               
               Cow position:chr14:11153330-11152721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 285

               
               
               Conread position:74-643
               
               
               Cow position:chr14:48253492-48252895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 218

               
               
               Conread position:77-337
               
               
               Cow position:chr14:30735997-30736274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:77-581
               
               
               Cow position:chr14:9046402-9046939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 303

               
               
               Conread position:77-601
               
               
               Cow position:chr14:9514462-9513954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 177

               
               
               Conread position:77-601
               
               
               Cow position:chr14:33677893-33678441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 47

               
               
               Conread position:77-606
               
               
               Cow position:chr14:46637376-46637920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:77-607
               
               
               Cow position:chr14:44775213-44774688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:77-642
               
               
               Cow position:chr14:1659280-1659887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:80-468
               
               
               Cow position:chr14:33240292-33240676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 207

               
               
               Conread position:89-554
               
               
               Cow position:chr14:27990766-27990296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 166

               
               
               Conread position:97-601
               
               
               Cow position:chr14:25365642-25365140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:103-642
               
               
               Cow position:chr14:32447813-32448386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 247

               
               
               Conread position:107-601
               
               
               Cow position:chr14:45188939-45188433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:110-601
               
               
               Cow position:chr14:44289925-44290443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 254

               
               
               Conread position:118-601
               
               
               Cow position:chr14:29224227-29223702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:353
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):27, 284

               
               
               Conread position:126-513
               
               
               Cow position:chr14:26090189-26090578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:131-595
               
               
               Cow position:chr14:28124113-28123650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:142-333
               
               
               Cow position:chr14:28244778-28244576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:157-392
               
               
               Cow position:chr14:31882375-31882615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 189

               
               
               Conread position:158-600
               
               
               Cow position:chr14:13089777-13090219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:293
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:161-422
               
               
               Cow position:chr14:30583674-30583408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):47, 181

               
               
               Conread position:161-472
               
               
               Cow position:chr14:10475179-10474871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:161-601
               
               
               Cow position:chr14:18417427-18417883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:161-601
               
               
               Cow position:chr14:30595432-30594975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:161-601
               
               
               Cow position:chr14:47643221-47643666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:163-478
               
               
               Cow position:chr14:33798401-33798726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:171-601
               
               
               Cow position:chr14:11654920-11654499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:194-602
               
               
               Cow position:chr14:44380296-44380726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:197-600
               
               
               Cow position:chr14:17965284-17965684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:198-601
               
               
               Cow position:chr14:19056589-19056194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:198-601
               
               
               Cow position:chr14:20564653-20564268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:212-446
               
               
               Cow position:chr14:44582357-44582583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 9

               
               
               Conread position:216-602
               
               
               Cow position:chr14:49217105-49217493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:216-642
               
               
               Cow position:chr14:2287247-2287697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:231-614
               
               
               Cow position:chr14:16342901-16342509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 159

               
               
               Conread position:241-553
               
               
               Cow position:chr14:9521709-9521389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:257-601
               
               
               Cow position:chr14:47939949-47939584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):159, 82

               
               
               Conread position:259-608
               
               
               Cow position:chr14:16808297-16807936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 83

               
               
               Conread position:262-643
               
               
               Cow position:chr14:12742010-12741614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:264-600
               
               
               Cow position:chr14:9102562-9102905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:266-571
               
               
               Cow position:chr14:33605886-33605567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):108, 73

               
               
               Conread position:274-626
               
               
               Cow position:chr14:35425162-35425521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):142, 73

               
               
               Conread position:277-601
               
               
               Cow position:chr14:35930640-35930965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:281-643
               
               
               Cow position:chr14:11476240-11475858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:299-643
               
               
               Cow position:chr14:17490273-17489908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:330-586
               
               
               Cow position:chr14:41410851-41411112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:348-601
               
               
               Cow position:chr14:30583282-30583021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:360-626
               
               
               Cow position:chr14:40167549-40167275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:360-642
               
               
               Cow position:chr14:33392794-33392492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:361-602
               
               
               Cow position:chr14:46403085-46403341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:390-564
               
               
               Cow position:chr14:33402999-33403179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:400-602
               
               
               Cow position:chr14:45082284-45082495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:415-601
               
               
               Cow position:chr14:47656572-47656758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:419-601
               
               
               Cow position:chr14:46390439-46390252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 134

               
               
               Conread position:432-603
               
               
               Cow position:chr14:35384420-35384244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:440-643
               
               
               Cow position:chr14:44690391-44690607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:449-644
               
               
               Cow position:chr14:13462677-13462876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 94

               
               
               Conread position:458-604
               
               
               Cow position:chr14:46502931-46503084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:458-643
               
               
               Cow position:chr14:50142205-50142407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:459-644
               
               
               Cow position:chr14:50112589-50112791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 192

               
               
               Conread position:3-381
               
               
               Cow position:chr15:7235005-7235399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 66

               
               
               Conread position:6-601
               
               
               Cow position:chr15:21914740-21915379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:406
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 305

               
               
               Conread position:6-643
               
               
               Cow position:chr15:5981098-5981788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:7-392
               
               
               Cow position:chr15:38981475-38981887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):59, 98

               
               
               Conread position:7-569
               
               
               Cow position:chr15:51675464-51676066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 201

               
               
               Conread position:7-601
               
               
               Cow position:chr15:32711972-32712614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 258

               
               
               Conread position:7-602
               
               
               Cow position:chr15:35736541-35737173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:7-603
               
               
               Cow position:chr15:4915940-4916552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:8-602
               
               
               Cow position:chr15:53313490-53314076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:375
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):11, 169

               
               
               Conread position:8-643
               
               
               Cow position:chr15:14581615-14580929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 261

               
               
               Conread position:12-601
               
               
               Cow position:chr15:24295838-24296464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 348

               
               
               Conread position:16-166
               
               
               Cow position:chr15:36392385-36392234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):127, 57

               
               
               Conread position:16-375
               
               
               Cow position:chr15:6067421-6067048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:16-566
               
               
               Cow position:chr15:4679015-4679619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 519

               
               
               Conread position:16-594
               
               
               Cow position:chr15:2013322-2013932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:16-601
               
               
               Cow position:chr15:4927130-4927758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:407
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 332

               
               
               Conread position:16-601
               
               
               Cow position:chr15:8100225-8100828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 246

               
               
               Conread position:16-601
               
               
               Cow position:chr15:28489387-28488777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 278

               
               
               Conread position:16-601
               
               
               Cow position:chr15:53409672-53410284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:16-639
               
               
               Cow position:chr15:36668506-36669121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 48

               
               
               Conread position:16-642
               
               
               Cow position:chr15:17293806-17294479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:16-643
               
               
               Cow position:chr15:35752562-35751875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 363

               
               
               Conread position:17-601
               
               
               Cow position:chr15:2926066-2926668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 349

               
               
               Conread position:17-601
               
               
               Cow position:chr15:3260561-3259944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:17-601
               
               
               Cow position:chr15:15346354-15345731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:17-631
               
               
               Cow position:chr15:4922903-4923563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:17-642
               
               
               Cow position:chr15:4765943-4766622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 351

               
               
               Conread position:17-642
               
               
               Cow position:chr15:18577470-18578144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr15:2077416-2078079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:17-643
               
               
               Cow position:chr15:18332071-18331403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 294

               
               
               Conread position:17-643
               
               
               Cow position:chr15:19737297-19736625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 98

               
               
               Conread position:17-643
               
               
               Cow position:chr15:35646919-35646253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:18-410
               
               
               Cow position:chr15:41357928-41358327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:18-489
               
               
               Cow position:chr15:1318205-1318669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 94

               
               
               Conread position:18-561
               
               
               Cow position:chr15:13677292-13677821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:375
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):127, 30

               
               
               Conread position:18-585
               
               
               Cow position:chr15:7261367-7261962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 361

               
               
               Conread position:18-586
               
               
               Cow position:chr15:7965188-7964586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:18-643
               
               
               Cow position:chr15:31359638-31360297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 269

               
               
               Conread position:19-601
               
               
               Cow position:chr15:4813360-4813967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:19-643
               
               
               Cow position:chr15:21664983-21664312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 258

               
               
               Conread position:20-408
               
               
               Cow position:chr15:6368046-6367617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):45, 360

               
               
               Conread position:22-601
               
               
               Cow position:chr15:4823242-4823809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 14

               
               
               Conread position:36-643
               
               
               Cow position:chr15:2901479-2900830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:64-568
               
               
               Cow position:chr15:42530725-42531256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 58

               
               
               Conread position:65-614
               
               
               Cow position:chr15:4672254-4672823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:67-588
               
               
               Cow position:chr15:329145-329697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:69-320
               
               
               Cow position:chr15:4950886-4951146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:69-387
               
               
               Cow position:chr15:50056848-50057175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):76, 287

               
               
               Conread position:69-392
               
               
               Cow position:chr15:20750209-20750545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):34, 272

               
               
               Conread position:69-499
               
               
               Cow position:chr15:29866904-29866450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:307
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):63, 290

               
               
               Conread position:69-504
               
               
               Cow position:chr15:1773317-1773773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-544
               
               
               Cow position:chr15:44071407-44071918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 305

               
               
               Conread position:69-556
               
               
               Cow position:chr15:6079571-6080075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 71

               
               
               Conread position:69-567
               
               
               Cow position:chr15:3009024-3008501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:69-599
               
               
               Cow position:chr15:11293616-11293069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 160

               
               
               Conread position:69-601
               
               
               Cow position:chr15:2646836-2646276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-601
               
               
               Cow position:chr15:3182247-3181689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:69-601
               
               
               Cow position:chr15:4197281-4197844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 145

               
               
               Conread position:69-612
               
               
               Cow position:chr15:2763621-2764185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 166

               
               
               Conread position:69-637
               
               
               Cow position:chr15:12454051-12454624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:380
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 232

               
               
               Conread position:70-551
               
               
               Cow position:chr15:7550962-7551470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 276

               
               
               Conread position:70-643
               
               
               Cow position:chr15:53299291-53299886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 19

               
               
               Conread position:71-334
               
               
               Cow position:chr15:36625441-36625182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):97, 123

               
               
               Conread position:72-504
               
               
               Cow position:chr15:1851615-1851193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:72-601
               
               
               Cow position:chr15:9430761-9431314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:388
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:72-601
               
               
               Cow position:chr15:17217306-17216776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:370
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:73-313
               
               
               Cow position:chr15:445437-445693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 69

               
               
               Conread position:73-381
               
               
               Cow position:chr15:51715737-51716056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:73-385
               
               
               Cow position:chr15:1783059-1783390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 287

               
               
               Conread position:73-427
               
               
               Cow position:chr15:50253649-50254017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 275

               
               
               Conread position:73-482
               
               
               Cow position:chr15:1299736-1299296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 205

               
               
               Conread position:73-492
               
               
               Cow position:chr15:6552999-6552556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:73-560
               
               
               Cow position:chr15:7892508-7892011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:73-564
               
               
               Cow position:chr15:11626509-11626995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:337
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):142, 60

               
               
               Conread position:73-600
               
               
               Cow position:chr15:5010813-5010256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 288

               
               
               Conread position:73-601
               
               
               Cow position:chr15:580253-580792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:73-601
               
               
               Cow position:chr15:4962458-4962991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 145

               
               
               Conread position:73-601
               
               
               Cow position:chr15:17148945-17149488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 185

               
               
               Conread position:73-608
               
               
               Cow position:chr15:25654251-25653675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 288

               
               
               Conread position:73-632
               
               
               Cow position:chr15:8751226-8751807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:73-642
               
               
               Cow position:chr15:9912407-9911806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 279

               
               
               Conread position:73-643
               
               
               Cow position:chr15:4386575-4387187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 151

               
               
               Conread position:73-643
               
               
               Cow position:chr15:24794646-24795248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 251

               
               
               Conread position:73-643
               
               
               Cow position:chr15:50123111-50122508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 186

               
               
               Conread position:73-644
               
               
               Cow position:chr15:7838084-7838699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 298

               
               
               Conread position:74-557
               
               
               Cow position:chr15:50147899-50148419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 288

               
               
               Conread position:74-569
               
               
               Cow position:chr15:32479775-32479252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:341
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):90, 187

               
               
               Conread position:74-613
               
               
               Cow position:chr15:31846297-31846835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:74-643
               
               
               Cow position:chr15:32493051-32492453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 208

               
               
               Conread position:75-423
               
               
               Cow position:chr15:31860394-31860008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 319

               
               
               Conread position:76-504
               
               
               Cow position:chr15:611475-611029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 189

               
               
               Conread position:76-573
               
               
               Cow position:chr15:25319479-25318992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:77-485
               
               
               Cow position:chr15:6485407-6485833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 180

               
               
               Conread position:77-580
               
               
               Cow position:chr15:4652200-4652729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 193

               
               
               Conread position:78-642
               
               
               Cow position:chr15:2588624-2588017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:79-642
               
               
               Cow position:chr15:58484-59082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 40

               
               
               Conread position:80-600
               
               
               Cow position:chr15:41956675-41957183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:345
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):146, 66

               
               
               Conread position:85-642
               
               
               Cow position:chr15:7563826-7564428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 274

               
               
               Conread position:87-353
               
               
               Cow position:chr15:7938284-7938561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):59, 224

               
               
               Conread position:87-594
               
               
               Cow position:chr15:24718177-24718694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 174

               
               
               Conread position:87-602
               
               
               Cow position:chr15:16287111-16286570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:359
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:88-601
               
               
               Cow position:chr15:21450517-21451072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 227

               
               
               Conread position:88-643
               
               
               Cow position:chr15:4686564-4687160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:89-601
               
               
               Cow position:chr15:18266938-18266388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 266

               
               
               Conread position:96-601
               
               
               Cow position:chr15:13074872-13075373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:333
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:97-603
               
               
               Cow position:chr15:7545691-7546252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 296

               
               
               Conread position:102-608
               
               
               Cow position:chr15:4108451-4107923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:108-643
               
               
               Cow position:chr15:20411452-20412026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 249

               
               
               Conread position:142-601
               
               
               Cow position:chr15:2412549-2412082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:144-643
               
               
               Cow position:chr15:17036770-17036227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 217

               
               
               Conread position:157-504
               
               
               Cow position:chr15:1238601-1238958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:157-504
               
               
               Cow position:chr15:20361172-20360820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:158-644
               
               
               Cow position:chr15:4726123-4726633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:162-614
               
               
               Cow position:chr15:9003286-9002832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:163-423
               
               
               Cow position:chr15:6625937-6626194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):68, 181

               
               
               Conread position:164-638
               
               
               Cow position:chr15:51218643-51219149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 183

               
               
               Conread position:165-642
               
               
               Cow position:chr15:3889852-3890334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:170-502
               
               
               Cow position:chr15:21964919-21965259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:171-643
               
               
               Cow position:chr15:6154999-6154497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:172-600
               
               
               Cow position:chr15:8058900-8059344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 165

               
               
               Conread position:181-599
               
               
               Cow position:chr15:32067667-32067234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:185-601
               
               
               Cow position:chr15:6591171-6590738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 149

               
               
               Conread position:186-474
               
               
               Cow position:chr15:22240044-22239747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 142

               
               
               Conread position:187-436
               
               
               Cow position:chr15:523876-523615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):30, 180

               
               
               Conread position:188-440
               
               
               Cow position:chr15:49520498-49520248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 54

               
               
               Conread position:189-601
               
               
               Cow position:chr15:1765269-1765693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:197-601
               
               
               Cow position:chr15:20355631-20355221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:199-563
               
               
               Cow position:chr15:500140-500510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:200-599
               
               
               Cow position:chr15:6279445-6279849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:202-599
               
               
               Cow position:chr15:6383183-6382786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 29

               
               
               Conread position:209-587
               
               
               Cow position:chr15:44302120-44301743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:215-602
               
               
               Cow position:chr15:7929556-7929947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:216-514
               
               
               Cow position:chr15:22529770-22529473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:216-579
               
               
               Cow position:chr15:24288489-24288120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:216-581
               
               
               Cow position:chr15:4141756-4141380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:216-601
               
               
               Cow position:chr15:33122356-33122755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:216-638
               
               
               Cow position:chr15:53339202-53339648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:222-645
               
               
               Cow position:chr15:17077574-17077133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 9

               
               
               Conread position:224-601
               
               
               Cow position:chr15:35898790-35898399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 120

               
               
               Conread position:232-642
               
               
               Cow position:chr15:6561584-6562017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:241-601
               
               
               Cow position:chr15:51613129-51613514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 56

               
               
               Conread position:241-642
               
               
               Cow position:chr15:107007-107431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 10

               
               
               Conread position:241-642
               
               
               Cow position:chr15:41659174-41659598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 10

               
               
               Conread position:244-599
               
               
               Cow position:chr15:10478516-10478151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:253-564
               
               
               Cow position:chr15:12419920-12419621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):130, 85

               
               
               Conread position:256-577
               
               
               Cow position:chr15:8410128-8410446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):137, 62

               
               
               Conread position:256-642
               
               
               Cow position:chr15:25205983-25205576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:256-642
               
               
               Cow position:chr15:32719640-32719250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):133, 35

               
               
               Conread position:259-579
               
               
               Cow position:chr15:7783406-7783102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:277-601
               
               
               Cow position:chr15:1833597-1833262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:281-601
               
               
               Cow position:chr15:1767887-1768205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:285-574
               
               
               Cow position:chr15:1830534-1830251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:293-602
               
               
               Cow position:chr15:6114648-6114966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 49

               
               
               Conread position:300-555
               
               
               Cow position:chr15:4951162-4951431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:304-646
               
               
               Cow position:chr15:6613790-6614153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:307-599
               
               
               Cow position:chr15:41219938-41219650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:320-581
               
               
               Cow position:chr15:50869423-50869695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:325-601
               
               
               Cow position:chr15:36624759-36624480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:328-602
               
               
               Cow position:chr15:9737828-9737548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:341-601
               
               
               Cow position:chr15:368543-368276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:342-504
               
               
               Cow position:chr15:1879139-1878974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:343-601
               
               
               Cow position:chr15:8698820-8698557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):169, 17

               
               
               Conread position:350-642
               
               
               Cow position:chr15:7939551-7939864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 195

               
               
               Conread position:351-601
               
               
               Cow position:chr15:7235442-7235703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:355-601
               
               
               Cow position:chr15:13390204-13389947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:366-642
               
               
               Cow position:chr15:12364571-12364857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:398-643
               
               
               Cow position:chr15:6329222-6329471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:419-600
               
               
               Cow position:chr15:6552593-6552404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:419-643
               
               
               Cow position:chr15:8811116-8810887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:428-643
               
               
               Cow position:chr15:31859759-31859526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:429-569
               
               
               Cow position:chr15:51716618-51716765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:429-601
               
               
               Cow position:chr15:32695363-32695536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:430-601
               
               
               Cow position:chr15:4081036-4080858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:433-599
               
               
               Cow position:chr15:1783533-1783706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:433-603
               
               
               Cow position:chr15:29970112-29969943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:440-633
               
               
               Cow position:chr15:19395749-19395544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 183

               
               
               Conread position:459-638
               
               
               Cow position:chr15:42685-42877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:1-603
               
               
               Cow position:chr16:6716195-6715575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:405
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 164

               
               
               Conread position:7-601
               
               
               Cow position:chr16:25086021-25086646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 304

               
               
               Conread position:7-641
               
               
               Cow position:chr16:43896870-43896176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 369

               
               
               Conread position:12-601
               
               
               Cow position:chr16:5890406-5891031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:12-643
               
               
               Cow position:chr16:25457064-25456393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:15-637
               
               
               Cow position:chr16:49221465-49220836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:16-251
               
               
               Cow position:chr16:42735978-42735732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:16-260
               
               
               Cow position:chr16:56916654-56916386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:16-292
               
               
               Cow position:chr16:49234218-49233918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:16-372
               
               
               Cow position:chr16:26105648-26105256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 361

               
               
               Conread position:16-392
               
               
               Cow position:chr16:15477254-15477656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:16-434
               
               
               Cow position:chr16:17056557-17056114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:16-478
               
               
               Cow position:chr16:406626-406132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 350

               
               
               Conread position:16-485
               
               
               Cow position:chr16:41166232-41165760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:16-504
               
               
               Cow position:chr16:49255807-49255302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:16-601
               
               
               Cow position:chr16:18497871-18497281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:16-635
               
               
               Cow position:chr16:26978553-26979182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 68

               
               
               Conread position:16-642
               
               
               Cow position:chr16:51084574-51085244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:17-423
               
               
               Cow position:chr16:23252023-23251577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 360

               
               
               Conread position:17-601
               
               
               Cow position:chr16:15185486-15186113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 373

               
               
               Conread position:17-608
               
               
               Cow position:chr16:12537513-12536910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 24

               
               
               Conread position:17-643
               
               
               Cow position:chr16:1432605-1433272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 122

               
               
               Conread position:17-643
               
               
               Cow position:chr16:1567038-1566376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 346

               
               
               Conread position:17-643
               
               
               Cow position:chr16:7676043-7675370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 355

               
               
               Conread position:17-643
               
               
               Cow position:chr16:8815690-8815020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 306

               
               
               Conread position:17-643
               
               
               Cow position:chr16:23983710-23984390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr16:25442045-25442717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 71

               
               
               Conread position:17-643
               
               
               Cow position:chr16:26664167-26664814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 349

               
               
               Conread position:17-643
               
               
               Cow position:chr16:40295760-40295079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 344

               
               
               Conread position:17-643
               
               
               Cow position:chr16:54324921-54324241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 347

               
               
               Conread position:17-644
               
               
               Cow position:chr16:837734-838400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 345

               
               
               Conread position:17-644
               
               
               Cow position:chr16:23535476-23534812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 245

               
               
               Conread position:17-644
               
               
               Cow position:chr16:29047437-29048111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:18-233
               
               
               Cow position:chr16:29984500-29984729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:18-601
               
               
               Cow position:chr16:27732965-27732347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:18-642
               
               
               Cow position:chr16:3088786-3088116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 303

               
               
               Conread position:18-643
               
               
               Cow position:chr16:10438667-10439346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 299

               
               
               Conread position:20-431
               
               
               Cow position:chr16:23808751-23809173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 173

               
               
               Conread position:21-418
               
               
               Cow position:chr16:51038506-51038905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:21-565
               
               
               Cow position:chr16:2482718-2482137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 295

               
               
               Conread position:43-642
               
               
               Cow position:chr16:2238305-2237683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:56-601
               
               
               Cow position:chr16:51403430-51402841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 335

               
               
               Conread position:67-336
               
               
               Cow position:chr16:3828799-3828529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:67-552
               
               
               Cow position:chr16:25001826-25001308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 149

               
               
               Conread position:67-606
               
               
               Cow position:chr16:9209436-9209977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:372
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:67-643
               
               
               Cow position:chr16:25258297-25258890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 237

               
               
               Conread position:68-643
               
               
               Cow position:chr16:28470600-28469974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 291

               
               
               Conread position:69-340
               
               
               Cow position:chr16:11284067-11284358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 211

               
               
               Conread position:69-340
               
               
               Cow position:chr16:21186090-21186381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-370
               
               
               Cow position:chr16:27714336-27714033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 184

               
               
               Conread position:69-375
               
               
               Cow position:chr16:25189123-25189440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):74, 189

               
               
               Conread position:69-595
               
               
               Cow position:chr16:16270659-16270107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 246

               
               
               Conread position:69-601
               
               
               Cow position:chr16:19779176-19778617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:69-642
               
               
               Cow position:chr16:27593982-27594595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 289

               
               
               Conread position:72-601
               
               
               Cow position:chr16:47474736-47475278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 193

               
               
               Conread position:73-320
               
               
               Cow position:chr16:54727063-54727318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:73-381
               
               
               Cow position:chr16:37455522-37455209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:73-443
               
               
               Cow position:chr16:4478491-4478097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 179

               
               
               Conread position:73-452
               
               
               Cow position:chr16:31591437-31591040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 256

               
               
               Conread position:73-514
               
               
               Cow position:chr16:28436997-28436520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:73-561
               
               
               Cow position:chr16:16897937-16898448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:73-575
               
               
               Cow position:chr16:39824414-39824930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 98

               
               
               Conread position:73-599
               
               
               Cow position:chr16:48334091-48333561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 220

               
               
               Conread position:73-601
               
               
               Cow position:chr16:5485210-5485758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 283

               
               
               Conread position:73-601
               
               
               Cow position:chr16:14665330-14664778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 238

               
               
               Conread position:73-601
               
               
               Cow position:chr16:23671176-23671743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 291

               
               
               Conread position:73-601
               
               
               Cow position:chr16:23801632-23801109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:350
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:73-601
               
               
               Cow position:chr16:34530782-34531322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 134

               
               
               Conread position:73-603
               
               
               Cow position:chr16:20202473-20203012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:73-608
               
               
               Cow position:chr16:28196766-28196199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 199

               
               
               Conread position:73-614
               
               
               Cow position:chr16:3330417-3330977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 281

               
               
               Conread position:73-643
               
               
               Cow position:chr16:15567735-15568345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 242

               
               
               Conread position:73-643
               
               
               Cow position:chr16:16228823-16229394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 50

               
               
               Conread position:74-357
               
               
               Cow position:chr16:19638541-19638833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 242

               
               
               Conread position:74-493
               
               
               Cow position:chr16:25171827-25172245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 46

               
               
               Conread position:75-504
               
               
               Cow position:chr16:10565297-10564852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:77-375
               
               
               Cow position:chr16:38023806-38024119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 124

               
               
               Conread position:77-601
               
               
               Cow position:chr16:33011-33566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 202

               
               
               Conread position:77-601
               
               
               Cow position:chr16:12668297-12667744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:363
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 282

               
               
               Conread position:77-601
               
               
               Cow position:chr16:27823742-27823215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:343
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):104, 190

               
               
               Conread position:77-603
               
               
               Cow position:chr16:10375116-10374565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 284

               
               
               Conread position:77-642
               
               
               Cow position:chr16:28169870-28169234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:84-601
               
               
               Cow position:chr16:41762328-41762853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:85-586
               
               
               Cow position:chr16:4367598-4368105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:328
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:85-608
               
               
               Cow position:chr16:5662326-5662881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 274

               
               
               Conread position:89-601
               
               
               Cow position:chr16:40557452-40556900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 172

               
               
               Conread position:89-602
               
               
               Cow position:chr16:27299635-27299114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:354
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:90-422
               
               
               Cow position:chr16:19080462-19080816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):59, 269

               
               
               Conread position:93-423
               
               
               Cow position:chr16:37481920-37481583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 151

               
               
               Conread position:104-549
               
               
               Cow position:chr16:16520253-16519788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 206

               
               
               Conread position:117-563
               
               
               Cow position:chr16:9931266-9931729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 187

               
               
               Conread position:118-614
               
               
               Cow position:chr16:19150059-19149554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:131-630
               
               
               Cow position:chr16:30071968-30072471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:339
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:134-335
               
               
               Cow position:chr16:25933239-25933456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:136-636
               
               
               Cow position:chr16:32937068-32937591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 215

               
               
               Conread position:144-411
               
               
               Cow position:chr16:7464869-7465152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 209

               
               
               Conread position:157-326
               
               
               Cow position:chr16:7670268-7670433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:157-642
               
               
               Cow position:chr16:1960036-1959538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:161-635
               
               
               Cow position:chr16:41685669-41685188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 187

               
               
               Conread position:162-601
               
               
               Cow position:chr16:41571972-41572434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 189

               
               
               Conread position:163-601
               
               
               Cow position:chr16:10967492-10967067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:164-500
               
               
               Cow position:chr16:49472230-49472566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):169, 74

               
               
               Conread position:164-643
               
               
               Cow position:chr16:2726633-2726127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:165-643
               
               
               Cow position:chr16:2410354-2409846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 206

               
               
               Conread position:167-626
               
               
               Cow position:chr16:5871476-5871953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 60

               
               
               Conread position:170-564
               
               
               Cow position:chr16:44669788-44669400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:171-413
               
               
               Cow position:chr16:39366323-39366082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:177-576
               
               
               Cow position:chr16:28158152-28158577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:181-601
               
               
               Cow position:chr16:5527789-5527351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 175

               
               
               Conread position:181-614
               
               
               Cow position:chr16:1860828-1861283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 187

               
               
               Conread position:186-643
               
               
               Cow position:chr16:37480255-37479768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 180

               
               
               Conread position:187-641
               
               
               Cow position:chr16:25342574-25343056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:188-601
               
               
               Cow position:chr16:29971164-29971593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 161

               
               
               Conread position:194-601
               
               
               Cow position:chr16:46500817-46501235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:215-601
               
               
               Cow position:chr16:43648754-43649137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:216-600
               
               
               Cow position:chr16:24764924-24764521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:216-601
               
               
               Cow position:chr16:337822-338220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:216-601
               
               
               Cow position:chr16:49385670-49386065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:223-557
               
               
               Cow position:chr16:4301552-4301203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):174, 16

               
               
               Conread position:223-580
               
               
               Cow position:chr16:27005698-27006045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):166, 16

               
               
               Conread position:244-601
               
               
               Cow position:chr16:18618450-18618094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:259-575
               
               
               Cow position:chr16:49233799-49233482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 83

               
               
               Conread position:260-482
               
               
               Cow position:chr16:19664082-19663864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:266-601
               
               
               Cow position:chr16:47627959-47627615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:274-644
               
               
               Cow position:chr16:18667084-18667460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:275-637
               
               
               Cow position:chr16:12245628-12245270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):231, 16

               
               
               Conread position:298-504
               
               
               Cow position:chr16:29984739-29984950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:299-642
               
               
               Cow position:chr16:16240566-16240206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:328-643
               
               
               Cow position:chr16:23809110-23809438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:330-642
               
               
               Cow position:chr16:39366117-39365805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:339-536
               
               
               Cow position:chr16:29034704-29034908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:349-642
               
               
               Cow position:chr16:5119249-5118931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:356-602
               
               
               Cow position:chr16:25933968-25934222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:396-596
               
               
               Cow position:chr16:42735759-42735556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 168

               
               
               Conread position:396-601
               
               
               Cow position:chr16:27712362-27712151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:410-642
               
               
               Cow position:chr16:20193335-20193084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:410-642
               
               
               Cow position:chr16:23251133-23250894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 194

               
               
               Conread position:420-598
               
               
               Cow position:chr16:25740108-25740287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 172

               
               
               Conread position:420-643
               
               
               Cow position:chr16:4474760-4474514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:426-642
               
               
               Cow position:chr16:7465457-7465691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:432-601
               
               
               Cow position:chr16:3828481-3828307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:434-631
               
               
               Cow position:chr16:44899791-44899589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):169, 71

               
               
               Conread position:3-463
               
               
               Cow position:chr17:13675318-13674828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 327

               
               
               Conread position:7-642
               
               
               Cow position:chr17:23323471-23322786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 361

               
               
               Conread position:12-642
               
               
               Cow position:chr17:20086784-20086114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:14-485
               
               
               Cow position:chr17:2031108-2031598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 147

               
               
               Conread position:16-504
               
               
               Cow position:chr17:2174793-2175284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 342

               
               
               Conread position:16-504
               
               
               Cow position:chr17:7942074-7941572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:324
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:16-580
               
               
               Cow position:chr17:4061082-4061689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 317

               
               
               Conread position:16-601
               
               
               Cow position:chr17:16121558-16120997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 40

               
               
               Conread position:16-601
               
               
               Cow position:chr17:21418563-21419163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:16-603
               
               
               Cow position:chr17:6069538-6070154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 347

               
               
               Conread position:16-637
               
               
               Cow position:chr17:1786954-1786314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:16-642
               
               
               Cow position:chr17:20403416-20404078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 100

               
               
               Conread position:16-644
               
               
               Cow position:chr17:14040056-14039393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 278

               
               
               Conread position:17-601
               
               
               Cow position:chr17:14240485-14241113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 215

               
               
               Conread position:17-643
               
               
               Cow position:chr17:6260846-6261521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 350

               
               
               Conread position:17-643
               
               
               Cow position:chr17:11086734-11086065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr17:40805796-40806469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:18-165
               
               
               Cow position:chr17:22133194-22133345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 6

               
               
               Conread position:18-601
               
               
               Cow position:chr17:24029016-24028393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 316

               
               
               Conread position:18-643
               
               
               Cow position:chr17:15372215-15372866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 6

               
               
               Conread position:19-423
               
               
               Cow position:chr17:14296268-14295862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):126, 21

               
               
               Conread position:19-570
               
               
               Cow position:chr17:150897-150333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 246

               
               
               Conread position:20-483
               
               
               Cow position:chr17:33284845-33284374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 202

               
               
               Conread position:20-637
               
               
               Cow position:chr17:20080882-20080240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:20-642
               
               
               Cow position:chr17:2247092-2246424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:24-489
               
               
               Cow position:chr17:22558962-22559450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 201

               
               
               Conread position:24-509
               
               
               Cow position:chr17:239339-239813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:28-599
               
               
               Cow position:chr17:8202962-8203543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 28

               
               
               Conread position:65-415
               
               
               Cow position:chr17:19020621-19020971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:66-434
               
               
               Cow position:chr17:54401-54037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 138

               
               
               Conread position:67-315
               
               
               Cow position:chr17:42266461-42266712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 152

               
               
               Conread position:67-415
               
               
               Cow position:chr17:21769964-21769593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 293

               
               
               Conread position:67-588
               
               
               Cow position:chr17:3707734-3707201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:69-282
               
               
               Cow position:chr17:6611441-6611208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-357
               
               
               Cow position:chr17:20390040-20389733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-500
               
               
               Cow position:chr17:18194853-18195285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 141

               
               
               Conread position:69-575
               
               
               Cow position:chr17:39453167-39453671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:330
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:69-601
               
               
               Cow position:chr17:3655247-3654680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 296

               
               
               Conread position:69-601
               
               
               Cow position:chr17:9080375-9079812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 290

               
               
               Conread position:69-601
               
               
               Cow position:chr17:20099421-20098872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 151

               
               
               Conread position:69-603
               
               
               Cow position:chr17:2077949-2077381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:69-642
               
               
               Cow position:chr17:11783900-11784529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 303

               
               
               Conread position:69-642
               
               
               Cow position:chr17:15436828-15437446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 294

               
               
               Conread position:69-642
               
               
               Cow position:chr17:39049260-39049879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:70-618
               
               
               Cow position:chr17:2149490-2150024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:381
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):76, 178

               
               
               Conread position:70-632
               
               
               Cow position:chr17:182623-183222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:72-601
               
               
               Cow position:chr17:13705839-13706367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 189

               
               
               Conread position:73-263
               
               
               Cow position:chr17:16856468-16856258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:73-334
               
               
               Cow position:chr17:13695094-13694840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 46

               
               
               Conread position:73-392
               
               
               Cow position:chr17:6120766-6121097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 299

               
               
               Conread position:73-423
               
               
               Cow position:chr17:4941666-4941303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:73-514
               
               
               Cow position:chr17:2580675-2581138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 207

               
               
               Conread position:73-556
               
               
               Cow position:chr17:23038631-23039128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:73-601
               
               
               Cow position:chr17:4083073-4083622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 193

               
               
               Conread position:73-601
               
               
               Cow position:chr17:5227675-5228230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 286

               
               
               Conread position:73-601
               
               
               Cow position:chr17:27793728-27793174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 242

               
               
               Conread position:73-642
               
               
               Cow position:chr17:14215977-14215386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 286

               
               
               Conread position:73-642
               
               
               Cow position:chr17:34157170-34157783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 290

               
               
               Conread position:73-642
               
               
               Cow position:chr17:43989552-43990164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 250

               
               
               Conread position:73-643
               
               
               Cow position:chr17:15851739-15852355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 292

               
               
               Conread position:73-643
               
               
               Cow position:chr17:19267776-19267183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 188

               
               
               Conread position:77-601
               
               
               Cow position:chr17:24783216-24783771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 284

               
               
               Conread position:77-642
               
               
               Cow position:chr17:15142301-15141695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 214

               
               
               Conread position:78-601
               
               
               Cow position:chr17:19609130-19608595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:363
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:79-576
               
               
               Cow position:chr17:1656793-1656299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 160

               
               
               Conread position:79-599
               
               
               Cow position:chr17:251208-251751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:87-563
               
               
               Cow position:chr17:4675187-4675674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:87-642
               
               
               Cow position:chr17:14936910-14936312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 210

               
               
               Conread position:96-622
               
               
               Cow position:chr17:6000405-5999868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 125

               
               
               Conread position:134-514
               
               
               Cow position:chr17:19899139-19899540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):13, 203

               
               
               Conread position:143-601
               
               
               Cow position:chr17:1881430-1881874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:144-643
               
               
               Cow position:chr17:3640775-3640243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 38

               
               
               Conread position:162-600
               
               
               Cow position:chr17:44926171-44925734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:167-528
               
               
               Cow position:chr17:38875650-38876013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:171-482
               
               
               Cow position:chr17:31534024-31534333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:179-557
               
               
               Cow position:chr17:1704038-1704436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 188

               
               
               Conread position:181-601
               
               
               Cow position:chr17:733174-732733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 143

               
               
               Conread position:181-601
               
               
               Cow position:chr17:28027332-28026898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:182-490
               
               
               Cow position:chr17:10841934-10842247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:188-475
               
               
               Cow position:chr17:18592782-18593074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:188-586
               
               
               Cow position:chr17:22133426-22133861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:216-482
               
               
               Cow position:chr17:4605070-4605346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):27, 142

               
               
               Conread position:216-601
               
               
               Cow position:chr17:2263352-2263748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 132

               
               
               Conread position:222-643
               
               
               Cow position:chr17:20489540-20489966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:225-601
               
               
               Cow position:chr17:42260387-42260768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:241-602
               
               
               Cow position:chr17:38946597-38946962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 102

               
               
               Conread position:244-642
               
               
               Cow position:chr17:4783570-4783150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):138, 41

               
               
               Conread position:256-477
               
               
               Cow position:chr17:20230529-20230748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):134, 81

               
               
               Conread position:256-569
               
               
               Cow position:chr17:36001798-36001480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):133, 100

               
               
               Conread position:256-601
               
               
               Cow position:chr17:29302009-29302366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 88

               
               
               Conread position:256-613
               
               
               Cow position:chr17:15326532-15326900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 24

               
               
               Conread position:256-642
               
               
               Cow position:chr17:13967179-13967588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:274-602
               
               
               Cow position:chr17:31094512-31094180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):225, 37

               
               
               Conread position:323-601
               
               
               Cow position:chr17:9751030-9751315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:342-601
               
               
               Cow position:chr17:42266999-42267265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:356-642
               
               
               Cow position:chr17:6121143-6121448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 9

               
               
               Conread position:360-643
               
               
               Cow position:chr17:135984-136290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:368-599
               
               
               Cow position:chr17:15685773-15686013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:384-642
               
               
               Cow position:chr17:17257309-17257028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:389-642
               
               
               Cow position:chr17:39827-40102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:410-643
               
               
               Cow position:chr17:2554864-2554613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:419-642
               
               
               Cow position:chr17:20415040-20414798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:428-601
               
               
               Cow position:chr17:19980707-19980527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:428-644
               
               
               Cow position:chr17:4346150-4345916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:459-601
               
               
               Cow position:chr17:22561357-22561505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 122

               
               
               Conread position:459-642
               
               
               Cow position:chr17:34159187-34159388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:462-601
               
               
               Cow position:chr17:20231281-20231427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:465-601
               
               
               Cow position:chr17:33284222-33284083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:468-642
               
               
               Cow position:chr17:45271650-45271457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:502-620
               
               
               Cow position:chr17:53567-53448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:7-643
               
               
               Cow position:chr18:33270134-33270769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:12-603
               
               
               Cow position:chr18:54271671-54272267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:15-602
               
               
               Cow position:chr18:29238092-29238704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:16-434
               
               
               Cow position:chr18:52652104-52652555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 372

               
               
               Conread position:16-474
               
               
               Cow position:chr18:27837115-27836622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:16-578
               
               
               Cow position:chr18:12237421-12237969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 196

               
               
               Conread position:16-600
               
               
               Cow position:chr18:28972690-28972070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 347

               
               
               Conread position:16-601
               
               
               Cow position:chr18:54004977-54004359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 348

               
               
               Conread position:17-601
               
               
               Cow position:chr18:16089332-16089937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 46

               
               
               Conread position:17-643
               
               
               Cow position:chr18:14131589-14132260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 349

               
               
               Conread position:17-643
               
               
               Cow position:chr18:14417175-14417839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 237

               
               
               Conread position:17-643
               
               
               Cow position:chr18:16175420-16174750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:17-643
               
               
               Cow position:chr18:25352452-25353132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 355

               
               
               Conread position:17-643
               
               
               Cow position:chr18:37507153-37507833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 373

               
               
               Conread position:18-642
               
               
               Cow position:chr18:37663542-37664162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 125

               
               
               Conread position:18-643
               
               
               Cow position:chr18:23798846-23799514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 347

               
               
               Conread position:19-643
               
               
               Cow position:chr18:27988399-27989056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 44

               
               
               Conread position:26-604
               
               
               Cow position:chr18:15856432-15857015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 312

               
               
               Conread position:65-584
               
               
               Cow position:chr18:16392829-16392312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:66-599
               
               
               Cow position:chr18:159970-159430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:356
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:67-418
               
               
               Cow position:chr18:40345149-40344776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:69-320
               
               
               Cow position:chr18:29074244-29074496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:69-601
               
               
               Cow position:chr18:32769007-32769539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 105

               
               
               Conread position:70-344
               
               
               Cow position:chr18:51614393-51614100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:70-632
               
               
               Cow position:chr18:47742760-47743350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 309

               
               
               Conread position:72-498
               
               
               Cow position:chr18:54022871-54022425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 280

               
               
               Conread position:73-354
               
               
               Cow position:chr18:16137589-16137297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:73-392
               
               
               Cow position:chr18:40479654-40479986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 243

               
               
               Conread position:73-406
               
               
               Cow position:chr18:33300574-33300907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:73-414
               
               
               Cow position:chr18:11273856-11273495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 171

               
               
               Conread position:73-442
               
               
               Cow position:chr18:16079931-16080319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 287

               
               
               Conread position:73-504
               
               
               Cow position:chr18:38343032-38342591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 283

               
               
               Conread position:73-529
               
               
               Cow position:chr18:56013838-56014320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:336
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):51, 141

               
               
               Conread position:73-600
               
               
               Cow position:chr18:19353623-19354183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 290

               
               
               Conread position:73-601
               
               
               Cow position:chr18:46867640-46867098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:371
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:73-601
               
               
               Cow position:chr18:46876071-46875553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:361
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):70, 149

               
               
               Conread position:73-601
               
               
               Cow position:chr18:51461792-51461233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 288

               
               
               Conread position:73-601
               
               
               Cow position:chr18:51482130-51482671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:73-601
               
               
               Cow position:chr18:54170250-54169706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 307

               
               
               Conread position:73-642
               
               
               Cow position:chr18:51342947-51343553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:73-643
               
               
               Cow position:chr18:29865350-29864741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 261

               
               
               Conread position:75-341
               
               
               Cow position:chr18:18851640-18851916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 111

               
               
               Conread position:75-523
               
               
               Cow position:chr18:20692912-20692444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):72, 147

               
               
               Conread position:77-338
               
               
               Cow position:chr18:21096448-21096703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 42

               
               
               Conread position:78-375
               
               
               Cow position:chr18:29407177-29406872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:88-600
               
               
               Cow position:chr18:25364479-25364982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:348
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:92-344
               
               
               Cow position:chr18:25921252-25921528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 228

               
               
               Conread position:96-643
               
               
               Cow position:chr18:36509897-36510487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 263

               
               
               Conread position:105-601
               
               
               Cow position:chr18:51694992-51695520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:122-457
               
               
               Cow position:chr18:29046640-29046290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 220

               
               
               Conread position:123-596
               
               
               Cow position:chr18:35799594-35799114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:128-601
               
               
               Cow position:chr18:35054460-35054941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:142-504
               
               
               Cow position:chr18:34043949-34044309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:142-563
               
               
               Cow position:chr18:26245288-26244843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 212

               
               
               Conread position:143-601
               
               
               Cow position:chr18:20235028-20234571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:146-573
               
               
               Cow position:chr18:33752056-33752485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:146-642
               
               
               Cow position:chr18:4947311-4947817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:161-426
               
               
               Cow position:chr18:17672444-17672170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:163-332
               
               
               Cow position:chr18:51271594-51271430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:164-465
               
               
               Cow position:chr18:6061443-6061142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 167

               
               
               Conread position:164-504
               
               
               Cow position:chr18:41839443-41839103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:179-501
               
               
               Cow position:chr18:8101028-8100723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):239, 43

               
               
               Conread position:179-601
               
               
               Cow position:chr18:51274699-51274258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:179-638
               
               
               Cow position:chr18:19485523-19486008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 163

               
               
               Conread position:181-601
               
               
               Cow position:chr18:14421664-14422093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:182-601
               
               
               Cow position:chr18:37490210-37490639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:197-641
               
               
               Cow position:chr18:15852060-15852508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):190, 15

               
               
               Conread position:199-370
               
               
               Cow position:chr18:20835055-20835225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:203-628
               
               
               Cow position:chr18:56485253-56484807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 170

               
               
               Conread position:222-504
               
               
               Cow position:chr18:36110687-36110401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:223-504
               
               
               Cow position:chr18:37157800-37157512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:230-586
               
               
               Cow position:chr18:48809570-48809926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:243-601
               
               
               Cow position:chr18:17962296-17961933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:245-603
               
               
               Cow position:chr18:5534460-5534825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 94

               
               
               Conread position:256-600
               
               
               Cow position:chr18:51593460-51593812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 143

               
               
               Conread position:258-526
               
               
               Cow position:chr18:2646059-2645798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):153, 77

               
               
               Conread position:287-642
               
               
               Cow position:chr18:24617629-24618003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:306-601
               
               
               Cow position:chr18:27538373-27538680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:307-643
               
               
               Cow position:chr18:25921907-25922261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 35

               
               
               Conread position:385-642
               
               
               Cow position:chr18:32166333-32166059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:396-643
               
               
               Cow position:chr18:40482599-40482866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):30, 172

               
               
               Conread position:404-642
               
               
               Cow position:chr18:11273247-11272988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):17, 162

               
               
               Conread position:405-601
               
               
               Cow position:chr18:42516240-42516446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 196

               
               
               Conread position:417-643
               
               
               Cow position:chr18:40344743-40344525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:420-632
               
               
               Cow position:chr18:52654444-52654674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 146

               
               
               Conread position:449-642
               
               
               Cow position:chr18:23660843-23660631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1-601
               
               
               Cow position:chr19:39667342-39666724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:1-638
               
               
               Cow position:chr19:1588053-1587367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:6-601
               
               
               Cow position:chr19:161940-161327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:7-446
               
               
               Cow position:chr19:256452-256924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 316

               
               
               Conread position:7-601
               
               
               Cow position:chr19:773790-774426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 365

               
               
               Conread position:8-643
               
               
               Cow position:chr19:9706972-9706293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 161

               
               
               Conread position:16-244
               
               
               Cow position:chr19:48861005-48860764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:16-282
               
               
               Cow position:chr19:135593-135308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 239

               
               
               Conread position:16-503
               
               
               Cow position:chr19:40816314-40815794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 366

               
               
               Conread position:16-601
               
               
               Cow position:chr19:28594750-28595359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:16-642
               
               
               Cow position:chr19:5900312-5899635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 354

               
               
               Conread position:17-392
               
               
               Cow position:chr19:7489550-7489953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:17-601
               
               
               Cow position:chr19:4386813-4387423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 213

               
               
               Conread position:17-601
               
               
               Cow position:chr19:12774314-12774926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 131

               
               
               Conread position:17-601
               
               
               Cow position:chr19:33874625-33875233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 223

               
               
               Conread position:17-643
               
               
               Cow position:chr19:173456-174134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:17-643
               
               
               Cow position:chr19:892423-891764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 163

               
               
               Conread position:17-643
               
               
               Cow position:chr19:40851250-40850593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 338

               
               
               Conread position:18-482
               
               
               Cow position:chr19:50723754-50724243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:24-643
               
               
               Cow position:chr19:28405495-28404858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:27-392
               
               
               Cow position:chr19:1489778-1489397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:68-642
               
               
               Cow position:chr19:40886464-40885868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:69-375
               
               
               Cow position:chr19:42583377-42583089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:69-396
               
               
               Cow position:chr19:33527372-33527719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-423
               
               
               Cow position:chr19:43144973-43145342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:69-637
               
               
               Cow position:chr19:20105986-20106594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 192

               
               
               Conread position:69-643
               
               
               Cow position:chr19:376461-375848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:69-643
               
               
               Cow position:chr19:32204555-32205130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:69-643
               
               
               Cow position:chr19:39391769-39392384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 254

               
               
               Conread position:70-375
               
               
               Cow position:chr19:33653465-33653156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):72, 271

               
               
               Conread position:70-551
               
               
               Cow position:chr19:30756480-30756984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 221

               
               
               Conread position:73-504
               
               
               Cow position:chr19:32210811-32210357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 276

               
               
               Conread position:73-561
               
               
               Cow position:chr19:39563-40078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 211

               
               
               Conread position:73-564
               
               
               Cow position:chr19:35384348-35383830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:340
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):94, 232

               
               
               Conread position:73-604
               
               
               Cow position:chr19:342505-343074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:73-626
               
               
               Cow position:chr19:27036338-27035797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:373
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:73-642
               
               
               Cow position:chr19:7343332-7343942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 288

               
               
               Conread position:73-642
               
               
               Cow position:chr19:52150421-52149807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 290

               
               
               Conread position:73-643
               
               
               Cow position:chr19:5730135-5730718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:73-643
               
               
               Cow position:chr19:28580398-28579791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:73-643
               
               
               Cow position:chr19:39184277-39183669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:74-386
               
               
               Cow position:chr19:6713463-6713147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 221

               
               
               Conread position:74-603
               
               
               Cow position:chr19:438175-437615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 188

               
               
               Conread position:75-333
               
               
               Cow position:chr19:44031646-44031918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:76-643
               
               
               Cow position:chr19:205771-206387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 284

               
               
               Conread position:78-374
               
               
               Cow position:chr19:29141205-29141515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:78-642
               
               
               Cow position:chr19:788674-789264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:384
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:96-643
               
               
               Cow position:chr19:33942857-33943442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:119-601
               
               
               Cow position:chr19:264959-265474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:146-514
               
               
               Cow position:chr19:19178786-19178411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:157-642
               
               
               Cow position:chr19:16319270-16318754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:160-500
               
               
               Cow position:chr19:32181684-32181345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:163-603
               
               
               Cow position:chr19:5249363-5248920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:167-475
               
               
               Cow position:chr19:9552809-9552485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:167-563
               
               
               Cow position:chr19:40794870-40794462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:168-598
               
               
               Cow position:chr19:3428983-3429420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:171-643
               
               
               Cow position:chr19:2272729-2272245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:182-601
               
               
               Cow position:chr19:32140000-32139572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:187-599
               
               
               Cow position:chr19:39096846-39097235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:188-632
               
               
               Cow position:chr19:166738-166266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:218-601
               
               
               Cow position:chr19:5678356-5677978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:241-504
               
               
               Cow position:chr19:23400774-23400523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):160, 98

               
               
               Conread position:244-598
               
               
               Cow position:chr19:35107326-35106978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):149, 33

               
               
               Conread position:249-563
               
               
               Cow position:chr19:16128617-16128938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):127, 82

               
               
               Conread position:274-538
               
               
               Cow position:chr19:4301552-4301810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 82

               
               
               Conread position:274-643
               
               
               Cow position:chr19:1583735-1584128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:280-601
               
               
               Cow position:chr19:48860270-48859932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:298-586
               
               
               Cow position:chr19:39985281-39984989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:298-642
               
               
               Cow position:chr19:28367458-28367820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:328-601
               
               
               Cow position:chr19:40471154-40470877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):178, 27

               
               
               Conread position:358-601
               
               
               Cow position:chr19:42582887-42582635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:379-642
               
               
               Cow position:chr19:30559777-30560060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 200

               
               
               Conread position:388-600
               
               
               Cow position:chr19:33596169-33595947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:396-643
               
               
               Cow position:chr19:3139577-3139842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:414-603
               
               
               Cow position:chr19:30453726-30453536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:421-601
               
               
               Cow position:chr19:547954-547759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:429-642
               
               
               Cow position:chr19:43146301-43146534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:443-601
               
               
               Cow position:chr19:256944-257107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 123

               
               
               Conread position:464-643
               
               
               Cow position:chr19:32468581-32468778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:2-601
               
               
               Cow position:chr2:53540567-53541199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 319

               
               
               Conread position:6-443
               
               
               Cow position:chr2:40539121-40539575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:304
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:7-597
               
               
               Cow position:chr2:49628407-49629019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:7-642
               
               
               Cow position:chr2:25028661-25027988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 168

               
               
               Conread position:8-643
               
               
               Cow position:chr2:282061-281368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 371

               
               
               Conread position:12-601
               
               
               Cow position:chr2:32656288-32656899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 321

               
               
               Conread position:12-642
               
               
               Cow position:chr2:9189402-9188728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 326

               
               
               Conread position:12-644
               
               
               Cow position:chr2:50078224-50078876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:16-374
               
               
               Cow position:chr2:31298431-31298813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 289

               
               
               Conread position:16-472
               
               
               Cow position:chr2:1691617-1692090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:16-477
               
               
               Cow position:chr2:44990659-44990167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:16-482
               
               
               Cow position:chr2:387140-386646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:324
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 350

               
               
               Conread position:16-514
               
               
               Cow position:chr2:6976311-6975806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:323
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:16-564
               
               
               Cow position:chr2:45916189-45915615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:16-564
               
               
               Cow position:chr2:45967375-45966815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:16-601
               
               
               Cow position:chr2:174919-174302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:16-601
               
               
               Cow position:chr2:15576198-15575582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:16-601
               
               
               Cow position:chr2:32434678-32434065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 359

               
               
               Conread position:16-614
               
               
               Cow position:chr2:16074885-16074262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:16-643
               
               
               Cow position:chr2:41687410-41688085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 352

               
               
               Conread position:16-643
               
               
               Cow position:chr2:44934334-44933678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 339

               
               
               Conread position:16-643
               
               
               Cow position:chr2:81257807-81258494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 297

               
               
               Conread position:16-644
               
               
               Cow position:chr2:78763291-78763970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 8

               
               
               Conread position:17-165
               
               
               Cow position:chr2:36981022-36981181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:17-236
               
               
               Cow position:chr2:22078430-22078666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:17-258
               
               
               Cow position:chr2:50982712-50982444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:17-260
               
               
               Cow position:chr2:24147504-24147769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:17-314
               
               
               Cow position:chr2:53330403-53330731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:17-600
               
               
               Cow position:chr2:36277749-36277160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:386
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:17-601
               
               
               Cow position:chr2:33088764-33089323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:379
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:17-601
               
               
               Cow position:chr2:72187843-72187234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:17-602
               
               
               Cow position:chr2:6962159-6962776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:17-643
               
               
               Cow position:chr2:8119183-8119860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 280

               
               
               Conread position:17-643
               
               
               Cow position:chr2:10185587-10184908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 344

               
               
               Conread position:17-643
               
               
               Cow position:chr2:11158481-11157803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 353

               
               
               Conread position:17-643
               
               
               Cow position:chr2:12223633-12222960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 347

               
               
               Conread position:17-643
               
               
               Cow position:chr2:13045072-13044390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 365

               
               
               Conread position:17-643
               
               
               Cow position:chr2:16900900-16901573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr2:24925206-24925883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 203

               
               
               Conread position:17-643
               
               
               Cow position:chr2:28648957-28648291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 300

               
               
               Conread position:17-643
               
               
               Cow position:chr2:28793892-28794563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 276

               
               
               Conread position:17-643
               
               
               Cow position:chr2:42670064-42669384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:17-643
               
               
               Cow position:chr2:47811489-47812168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 352

               
               
               Conread position:17-643
               
               
               Cow position:chr2:80292112-80291445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 214

               
               
               Conread position:18-415
               
               
               Cow position:chr2:40453555-40453959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:18-588
               
               
               Cow position:chr2:6673888-6674482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:18-601
               
               
               Cow position:chr2:3789213-3788622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:18-642
               
               
               Cow position:chr2:57336187-57336865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 350

               
               
               Conread position:19-475
               
               
               Cow position:chr2:31662721-31663191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:19-601
               
               
               Cow position:chr2:55483501-55482896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 299

               
               
               Conread position:19-642
               
               
               Cow position:chr2:59413044-59412400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 299

               
               
               Conread position:25-642
               
               
               Cow position:chr2:78743238-78743872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:26-614
               
               
               Cow position:chr2:34051818-34052440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:64-336
               
               
               Cow position:chr2:53555165-53555427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):153, 39

               
               
               Conread position:66-286
               
               
               Cow position:chr2:20901391-20901150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:67-601
               
               
               Cow position:chr2:574293-574851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 287

               
               
               Conread position:69-387
               
               
               Cow position:chr2:28619253-28618933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 73

               
               
               Conread position:69-475
               
               
               Cow position:chr2:13481966-13481577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):81, 56

               
               
               Conread position:69-504
               
               
               Cow position:chr2:42332187-42331729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:69-577
               
               
               Cow position:chr2:9908616-9909156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 292

               
               
               Conread position:69-601
               
               
               Cow position:chr2:364366-363803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-601
               
               
               Cow position:chr2:11730509-11731016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 36

               
               
               Conread position:69-601
               
               
               Cow position:chr2:36052309-36051761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:69-603
               
               
               Cow position:chr2:19012056-19012622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 301

               
               
               Conread position:69-632
               
               
               Cow position:chr2:39422326-39422930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr2:26905052-26904455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 287

               
               
               Conread position:69-642
               
               
               Cow position:chr2:41048348-41047711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:69-642
               
               
               Cow position:chr2:45938980-45938384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 140

               
               
               Conread position:70-601
               
               
               Cow position:chr2:32458340-32457795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:70-601
               
               
               Cow position:chr2:34563959-34563408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 189

               
               
               Conread position:70-601
               
               
               Cow position:chr2:43961399-43961938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:366
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:71-642
               
               
               Cow position:chr2:26922130-26922745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 291

               
               
               Conread position:73-340
               
               
               Cow position:chr2:5484302-5484050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):181, 23

               
               
               Conread position:73-358
               
               
               Cow position:chr2:49605647-49605941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 60

               
               
               Conread position:73-422
               
               
               Cow position:chr2:211552-211215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 78

               
               
               Conread position:73-454
               
               
               Cow position:chr2:17424558-17424970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 292

               
               
               Conread position:73-474
               
               
               Cow position:chr2:63291264-63290856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:73-544
               
               
               Cow position:chr2:62055896-62056366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 184

               
               
               Conread position:73-557
               
               
               Cow position:chr2:2412090-2411566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 56

               
               
               Conread position:73-580
               
               
               Cow position:chr2:38374493-38375024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 168

               
               
               Conread position:73-597
               
               
               Cow position:chr2:36975801-36976343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 179

               
               
               Conread position:73-601
               
               
               Cow position:chr2:10610940-10610380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 199

               
               
               Conread position:73-601
               
               
               Cow position:chr2:20892100-20891568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:73-601
               
               
               Cow position:chr2:43445657-43446225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 321

               
               
               Conread position:73-601
               
               
               Cow position:chr2:72681402-72680872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:73-603
               
               
               Cow position:chr2:2087460-2086902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 249

               
               
               Conread position:73-603
               
               
               Cow position:chr2:25887841-25887282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 286

               
               
               Conread position:73-608
               
               
               Cow position:chr2:28640138-28639571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 234

               
               
               Conread position:73-642
               
               
               Cow position:chr2:247172-246572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 160

               
               
               Conread position:73-642
               
               
               Cow position:chr2:9958361-9957755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 179

               
               
               Conread position:73-642
               
               
               Cow position:chr2:47037728-47037114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chr2:52617181-52617793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 286

               
               
               Conread position:73-647
               
               
               Cow position:chr2:51617959-51618560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:74-566
               
               
               Cow position:chr2:44649987-44650478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:346
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:74-643
               
               
               Cow position:chr2:19225587-19226162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 280

               
               
               Conread position:74-643
               
               
               Cow position:chr2:65937525-65936910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:75-514
               
               
               Cow position:chr2:49625198-49624758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):71, 83

               
               
               Conread position:76-601
               
               
               Cow position:chr2:5903612-5903078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 75

               
               
               Conread position:77-598
               
               
               Cow position:chr2:3323851-3323303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 177

               
               
               Conread position:77-601
               
               
               Cow position:chr2:17823366-17823863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 75

               
               
               Conread position:77-601
               
               
               Cow position:chr2:35356727-35357252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:77-601
               
               
               Cow position:chr2:47602555-47601999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 281

               
               
               Conread position:77-642
               
               
               Cow position:chr2:4402448-4401833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:78-290
               
               
               Cow position:chr2:3834254-3834027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:78-384
               
               
               Cow position:chr2:1199012-1198694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:78-599
               
               
               Cow position:chr2:25766726-25767251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:352
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:80-375
               
               
               Cow position:chr2:36076515-36076227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):140, 45

               
               
               Conread position:80-453
               
               
               Cow position:chr2:36992898-36993280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:80-578
               
               
               Cow position:chr2:36029663-36029159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:80-642
               
               
               Cow position:chr2:14210085-14209505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:81-603
               
               
               Cow position:chr2:6006126-6005582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 193

               
               
               Conread position:84-599
               
               
               Cow position:chr2:56801890-56801406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:353
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 36

               
               
               Conread position:84-601
               
               
               Cow position:chr2:54738205-54738751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 267

               
               
               Conread position:87-600
               
               
               Cow position:chr2:6880077-6880622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 266

               
               
               Conread position:87-601
               
               
               Cow position:chr2:41180859-41181378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:87-601
               
               
               Cow position:chr2:50323845-50324344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:87-643
               
               
               Cow position:chr2:10264684-10264096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 274

               
               
               Conread position:88-601
               
               
               Cow position:chr2:11693206-11693735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:89-497
               
               
               Cow position:chr2:25743261-25743692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 250

               
               
               Conread position:95-501
               
               
               Cow position:chr2:66225741-66226152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:100-644
               
               
               Cow position:chr2:54693694-54694256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 249

               
               
               Conread position:104-558
               
               
               Cow position:chr2:24471889-24471408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 249

               
               
               Conread position:104-643
               
               
               Cow position:chr2:52063504-52064077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 247

               
               
               Conread position:106-599
               
               
               Cow position:chr2:905015-905525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 146

               
               
               Conread position:108-514
               
               
               Cow position:chr2:34473840-34473425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:109-433
               
               
               Cow position:chr2:41154562-41154907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:112-601
               
               
               Cow position:chr2:32065295-32064773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 248

               
               
               Conread position:115-560
               
               
               Cow position:chr2:16291434-16291910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 201

               
               
               Conread position:116-603
               
               
               Cow position:chr2:10732085-10731594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:118-427
               
               
               Cow position:chr2:5869586-5869280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:129-601
               
               
               Cow position:chr2:64768414-64767936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:130-465
               
               
               Cow position:chr2:1209117-1208770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 238

               
               
               Conread position:137-330
               
               
               Cow position:chr2:7629492-7629693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:142-501
               
               
               Cow position:chr2:33795086-33794714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:157-504
               
               
               Cow position:chr2:51988984-51988627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 159

               
               
               Conread position:168-599
               
               
               Cow position:chr2:20872663-20872233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 56

               
               
               Conread position:171-452
               
               
               Cow position:chr2:49631333-49631614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:179-601
               
               
               Cow position:chr2:47526537-47526104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:181-536
               
               
               Cow position:chr2:54408794-54408438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:186-601
               
               
               Cow position:chr2:36981221-36981654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:188-643
               
               
               Cow position:chr2:24926252-24926732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:191-370
               
               
               Cow position:chr2:11558619-11558803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:191-601
               
               
               Cow position:chr2:12696631-12696204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:197-584
               
               
               Cow position:chr2:72906380-72905967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 260

               
               
               Conread position:214-597
               
               
               Cow position:chr2:2394620-2395025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:216-599
               
               
               Cow position:chr2:85082067-85081689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:221-642
               
               
               Cow position:chr2:72688483-72688925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 61

               
               
               Conread position:256-601
               
               
               Cow position:chr2:14823957-14824300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:256-601
               
               
               Cow position:chr2:56888646-56889002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 63

               
               
               Conread position:266-643
               
               
               Cow position:chr2:50982222-50981830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 78

               
               
               Conread position:274-601
               
               
               Cow position:chr2:22078829-22079171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:277-588
               
               
               Cow position:chr2:39690837-39691154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):102, 62

               
               
               Conread position:278-601
               
               
               Cow position:chr2:63518904-63519229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):115, 43

               
               
               Conread position:285-587
               
               
               Cow position:chr2:12363048-12362731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 57

               
               
               Conread position:294-604
               
               
               Cow position:chr2:47600746-47600417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 239

               
               
               Conread position:296-643
               
               
               Cow position:chr2:53330742-53331121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:307-643
               
               
               Cow position:chr2:13553527-13553885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:311-637
               
               
               Cow position:chr2:42361308-42360958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:322-558
               
               
               Cow position:chr2:12328104-12328357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:327-488
               
               
               Cow position:chr2:81504249-81504413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:328-469
               
               
               Cow position:chr2:31300121-31300267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:333-643
               
               
               Cow position:chr2:780424-780089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:339-497
               
               
               Cow position:chr2:51397981-51397817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:341-643
               
               
               Cow position:chr2:32639936-32640262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:351-642
               
               
               Cow position:chr2:11558850-11559167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:353-601
               
               
               Cow position:chr2:62729515-62729775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:355-515
               
               
               Cow position:chr2:62727569-62727734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:366-601
               
               
               Cow position:chr2:37788997-37788747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:369-638
               
               
               Cow position:chr2:18242885-18242593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:402-643
               
               
               Cow position:chr2:11682205-11682463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 175

               
               
               Conread position:403-601
               
               
               Cow position:chr2:33082909-33082701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:406-599
               
               
               Cow position:chr2:31454526-31454726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:410-601
               
               
               Cow position:chr2:314823-314626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 146

               
               
               Conread position:410-642
               
               
               Cow position:chr2:5869066-5868816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):96, 74

               
               
               Conread position:419-612
               
               
               Cow position:chr2:210966-210765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:420-642
               
               
               Cow position:chr2:44092448-44092677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):85, 178

               
               
               Conread position:423-614
               
               
               Cow position:chr2:41154991-41155199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 137

               
               
               Conread position:426-643
               
               
               Cow position:chr2:53005164-53004929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:449-642
               
               
               Cow position:chr2:25022006-25022220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:449-642
               
               
               Cow position:chr2:49303189-49302978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:463-642
               
               
               Cow position:chr2:67188728-67188924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:5-601
               
               
               Cow position:chr20:5466184-5466792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 185

               
               
               Conread position:12-643
               
               
               Cow position:chr20:15293144-15293817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 241

               
               
               Conread position:16-315
               
               
               Cow position:chr20:13663886-13663563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:16-338
               
               
               Cow position:chr20:22210208-22210543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):52, 7

               
               
               Conread position:16-423
               
               
               Cow position:chr20:18314187-18313777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:16-426
               
               
               Cow position:chr20:27338368-27338797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 60

               
               
               Conread position:16-460
               
               
               Cow position:chr20:9520975-9520517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 348

               
               
               Conread position:16-592
               
               
               Cow position:chr20:21395090-21395688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:16-601
               
               
               Cow position:chr20:9344126-9344729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 237

               
               
               Conread position:16-643
               
               
               Cow position:chr20:28564424-28563740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:16-644
               
               
               Cow position:chr20:15096725-15096057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:17-528
               
               
               Cow position:chr20:12569681-12570218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 179

               
               
               Conread position:17-569
               
               
               Cow position:chr20:27870363-27870959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 354

               
               
               Conread position:17-608
               
               
               Cow position:chr20:23800044-23800674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:17-641
               
               
               Cow position:chr20:29949677-29950359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:17-643
               
               
               Cow position:chr20:13764064-13764732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:17-643
               
               
               Cow position:chr20:23468503-23467832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 306

               
               
               Conread position:19-290
               
               
               Cow position:chr20:8216677-8216971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 185

               
               
               Conread position:24-316
               
               
               Cow position:chr20:14869791-14869479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 268

               
               
               Conread position:26-601
               
               
               Cow position:chr20:20753615-20753036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 93

               
               
               Conread position:65-642
               
               
               Cow position:chr20:32120551-32121148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 54

               
               
               Conread position:66-621
               
               
               Cow position:chr20:13787276-13787842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:67-297
               
               
               Cow position:chr20:13678828-13678578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:67-318
               
               
               Cow position:chr20:5229296-5229028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:67-482
               
               
               Cow position:chr20:18323718-18323309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:67-504
               
               
               Cow position:chr20:14742527-14742976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:67-606
               
               
               Cow position:chr20:30686791-30687373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 294

               
               
               Conread position:68-465
               
               
               Cow position:chr20:19355986-19356398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 192

               
               
               Conread position:69-320
               
               
               Cow position:chr20:13433154-13432891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):154, 110

               
               
               Conread position:69-581
               
               
               Cow position:chr20:13499332-13499870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 246

               
               
               Conread position:69-595
               
               
               Cow position:chr20:18967719-18968254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:370
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):77, 140

               
               
               Conread position:69-603
               
               
               Cow position:chr20:30429490-30430057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 290

               
               
               Conread position:69-642
               
               
               Cow position:chr20:823991-824603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 245

               
               
               Conread position:73-387
               
               
               Cow position:chr20:19340864-19341186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 42

               
               
               Conread position:73-580
               
               
               Cow position:chr20:871783-871262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 285

               
               
               Conread position:73-588
               
               
               Cow position:chr20:10854114-10853582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 264

               
               
               Conread position:73-593
               
               
               Cow position:chr20:16178543-16177973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 288

               
               
               Conread position:73-601
               
               
               Cow position:chr20:25849597-25849047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 295

               
               
               Conread position:73-642
               
               
               Cow position:chr20:15066693-15067283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 223

               
               
               Conread position:73-642
               
               
               Cow position:chr20:19439139-19439752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-643
               
               
               Cow position:chr20:5536161-5536780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 292

               
               
               Conread position:73-643
               
               
               Cow position:chr20:21915855-21916473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 294

               
               
               Conread position:73-644
               
               
               Cow position:chr20:17660518-17659907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 285

               
               
               Conread position:76-299
               
               
               Cow position:chr20:5791566-5791794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 75

               
               
               Conread position:77-601
               
               
               Cow position:chr20:37581443-37581948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:355
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:77-643
               
               
               Cow position:chr20:9546897-9547482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 168

               
               
               Conread position:78-601
               
               
               Cow position:chr20:5937913-5937386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:349
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):68, 139

               
               
               Conread position:84-601
               
               
               Cow position:chr20:24615656-24615128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 247

               
               
               Conread position:112-588
               
               
               Cow position:chr20:12437158-12436651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 266

               
               
               Conread position:130-514
               
               
               Cow position:chr20:13769147-13769536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:157-601
               
               
               Cow position:chr20:926086-925625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):104, 66

               
               
               Conread position:157-642
               
               
               Cow position:chr20:26054379-26053855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 201

               
               
               Conread position:161-446
               
               
               Cow position:chr20:22698322-22698599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:179-601
               
               
               Cow position:chr20:41364295-41363860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 142

               
               
               Conread position:186-595
               
               
               Cow position:chr20:8972829-8972401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:187-643
               
               
               Cow position:chr20:28162180-28162661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:220-424
               
               
               Cow position:chr20:14869186-14868989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:260-643
               
               
               Cow position:chr20:35126091-35126492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 82

               
               
               Conread position:266-601
               
               
               Cow position:chr20:21717861-21718217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:285-643
               
               
               Cow position:chr20:13793484-13793853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:295-504
               
               
               Cow position:chr20:30386614-30386400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:295-582
               
               
               Cow position:chr20:31497953-31497662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:298-642
               
               
               Cow position:chr20:20441483-20441115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:304-601
               
               
               Cow position:chr20:13678366-13678057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:319-642
               
               
               Cow position:chr20:35018437-35018767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:328-580
               
               
               Cow position:chr20:7573068-7572807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:358-642
               
               
               Cow position:chr20:25899219-25899524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:366-601
               
               
               Cow position:chr20:12041961-12042205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:383-599
               
               
               Cow position:chr20:19341382-19341607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:388-643
               
               
               Cow position:chr20:10101457-10101186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:406-644
               
               
               Cow position:chr20:19214557-19214805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 208

               
               
               Conread position:430-601
               
               
               Cow position:chr20:9533406-9533577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):115, 89

               
               
               Conread position:1-642
               
               
               Cow position:chr21:1286950-1286253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:2-598
               
               
               Cow position:chr21:30163789-30163185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:390
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:5-642
               
               
               Cow position:chr21:26635894-26635209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 368

               
               
               Conread position:6-599
               
               
               Cow position:chr21:2712200-2712789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:16-414
               
               
               Cow position:chr21:4185197-4185608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:16-519
               
               
               Cow position:chr21:21519871-21520410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:364
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):46, 316

               
               
               Conread position:16-549
               
               
               Cow position:chr21:49296173-49296700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 40

               
               
               Conread position:16-601
               
               
               Cow position:chr21:37149310-37149875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:16-643
               
               
               Cow position:chr21:40270401-40269724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:17-204
               
               
               Cow position:chr21:26402218-26402010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:17-267
               
               
               Cow position:chr21:5839991-5839712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:17-456
               
               
               Cow position:chr21:35145031-35145487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 260

               
               
               Conread position:17-523
               
               
               Cow position:chr21:28736455-28736999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 170

               
               
               Conread position:17-601
               
               
               Cow position:chr21:10851358-10851972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:17-601
               
               
               Cow position:chr21:27284740-27285349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr21:3780041-3780722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 354

               
               
               Conread position:17-643
               
               
               Cow position:chr21:10567975-10568646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 293

               
               
               Conread position:17-643
               
               
               Cow position:chr21:31515044-31514369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr21:47646604-47647280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 350

               
               
               Conread position:18-562
               
               
               Cow position:chr21:28985379-28985952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 201

               
               
               Conread position:18-643
               
               
               Cow position:chr21:27069688-27069016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 348

               
               
               Conread position:19-601
               
               
               Cow position:chr21:33253456-33254076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 348

               
               
               Conread position:19-643
               
               
               Cow position:chr21:5012431-5011787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:24-644
               
               
               Cow position:chr21:4588698-4588070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 211

               
               
               Conread position:65-462
               
               
               Cow position:chr21:39480278-39479883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:67-601
               
               
               Cow position:chr21:361006-361567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:67-601
               
               
               Cow position:chr21:31639261-31639808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:68-629
               
               
               Cow position:chr21:23708584-23709152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:375
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:69-288
               
               
               Cow position:chr21:7063835-7064074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-293
               
               
               Cow position:chr21:40683111-40682868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:69-300
               
               
               Cow position:chr21:27036066-27035815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-468
               
               
               Cow position:chr21:12054685-12054262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:69-601
               
               
               Cow position:chr21:4181907-4182450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:69-601
               
               
               Cow position:chr21:6625856-6626427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 259

               
               
               Conread position:69-632
               
               
               Cow position:chr21:11506944-11507539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 294

               
               
               Conread position:69-642
               
               
               Cow position:chr21:2512180-2512797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 310

               
               
               Conread position:73-422
               
               
               Cow position:chr21:45786094-45785748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:73-492
               
               
               Cow position:chr21:16870561-16870982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:73-601
               
               
               Cow position:chr21:218364-218902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:73-601
               
               
               Cow position:chr21:1075400-1075945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:351
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 206

               
               
               Conread position:73-601
               
               
               Cow position:chr21:22752073-22751550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:360
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:73-601
               
               
               Cow position:chr21:39426398-39426959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 305

               
               
               Conread position:73-632
               
               
               Cow position:chr21:37372575-37373163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 284

               
               
               Conread position:73-643
               
               
               Cow position:chr21:147263-147868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 282

               
               
               Conread position:73-643
               
               
               Cow position:chr21:2417554-2418152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:73-643
               
               
               Cow position:chr21:28613685-28614261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 53

               
               
               Conread position:73-643
               
               
               Cow position:chr21:30598143-30597522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 304

               
               
               Conread position:74-453
               
               
               Cow position:chr21:3169729-3170103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:74-637
               
               
               Cow position:chr21:30411-30970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:74-643
               
               
               Cow position:chr21:5018479-5019090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:75-468
               
               
               Cow position:chr21:45782822-45783225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 190

               
               
               Conread position:75-601
               
               
               Cow position:chr21:20743275-20742745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 150

               
               
               Conread position:75-638
               
               
               Cow position:chr21:26849679-26849090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 282

               
               
               Conread position:76-599
               
               
               Cow position:chr21:47942287-47942840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 283

               
               
               Conread position:77-423
               
               
               Cow position:chr21:42914706-42915072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 280

               
               
               Conread position:77-432
               
               
               Cow position:chr21:23804769-23804408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 181

               
               
               Conread position:77-494
               
               
               Cow position:chr21:34822871-34822429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 282

               
               
               Conread position:87-354
               
               
               Cow position:chr21:15278509-15278238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 154

               
               
               Conread position:87-573
               
               
               Cow position:chr21:27567120-27567610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:89-642
               
               
               Cow position:chr21:19612110-19612708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 281

               
               
               Conread position:95-517
               
               
               Cow position:chr21:34076433-34076017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:96-334
               
               
               Cow position:chr21:44640136-44639894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:97-601
               
               
               Cow position:chr21:4564835-4565358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 165

               
               
               Conread position:97-601
               
               
               Cow position:chr21:29004168-29003625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 263

               
               
               Conread position:125-601
               
               
               Cow position:chr21:29257688-29257211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:328
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:127-629
               
               
               Cow position:chr21:13297995-13298521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:140-489
               
               
               Cow position:chr21:27599505-27599848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:146-643
               
               
               Cow position:chr21:2880407-2879881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 207

               
               
               Conread position:157-601
               
               
               Cow position:chr21:38801868-38802332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 193

               
               
               Conread position:162-601
               
               
               Cow position:chr21:31250451-31250888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 182

               
               
               Conread position:163-549
               
               
               Cow position:chr21:21024905-21025297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:163-601
               
               
               Cow position:chr21:2539648-2539184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:167-601
               
               
               Cow position:chr21:24085359-24084907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 178

               
               
               Conread position:167-601
               
               
               Cow position:chr21:38023581-38024024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:169-637
               
               
               Cow position:chr21:34655284-34655772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 172

               
               
               Conread position:174-631
               
               
               Cow position:chr21:28256892-28257357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:181-637
               
               
               Cow position:chr21:26836640-26837132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 130

               
               
               Conread position:185-643
               
               
               Cow position:chr21:30563135-30563612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:186-553
               
               
               Cow position:chr21:41404776-41405163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:187-601
               
               
               Cow position:chr21:468364-468794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:188-636
               
               
               Cow position:chr21:405687-405222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:303
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:205-601
               
               
               Cow position:chr21:9893453-9893863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:212-580
               
               
               Cow position:chr21:11181688-11182076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:220-642
               
               
               Cow position:chr21:6414524-6414076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:222-601
               
               
               Cow position:chr21:25125113-25125501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:223-601
               
               
               Cow position:chr21:21916754-21917125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:227-642
               
               
               Cow position:chr21:997327-996890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 123

               
               
               Conread position:256-586
               
               
               Cow position:chr21:5839648-5839324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:259-601
               
               
               Cow position:chr21:36979369-36979007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):135, 83

               
               
               Conread position:264-601
               
               
               Cow position:chr21:34035435-34035098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:270-504
               
               
               Cow position:chr21:36979878-36980102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):146, 61

               
               
               Conread position:279-602
               
               
               Cow position:chr21:18816690-18816363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:280-640
               
               
               Cow position:chr21:4784621-4784260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:282-633
               
               
               Cow position:chr21:33710713-33711087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:287-602
               
               
               Cow position:chr21:14645435-14645117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:298-593
               
               
               Cow position:chr21:39089956-39090250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:309-530
               
               
               Cow position:chr21:2673091-2672878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:315-642
               
               
               Cow position:chr21:21701508-21701850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:331-636
               
               
               Cow position:chr21:26649086-26648772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:349-643
               
               
               Cow position:chr21:44764319-44764006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:389-600
               
               
               Cow position:chr21:7591331-7591550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:390-593
               
               
               Cow position:chr21:27150154-27150366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 193

               
               
               Conread position:410-601
               
               
               Cow position:chr21:29633471-29633661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 92

               
               
               Conread position:430-600
               
               
               Cow position:chr21:42915524-42915701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:433-643
               
               
               Cow position:chr21:1194167-1194384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):170, 43

               
               
               Conread position:440-643
               
               
               Cow position:chr21:35143964-35143742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:459-601
               
               
               Cow position:chr21:26402011-26401863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:2-601
               
               
               Cow position:chr22:1323300-1323874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 170

               
               
               Conread position:2-642
               
               
               Cow position:chr22:30677602-30676937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 182

               
               
               Conread position:5-599
               
               
               Cow position:chr22:326100-325455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 123

               
               
               Conread position:6-602
               
               
               Cow position:chr22:96260-95674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:406
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:7-643
               
               
               Cow position:chr22:1519929-1519256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 308

               
               
               Conread position:9-450
               
               
               Cow position:chr22:31118142-31117678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:12-603
               
               
               Cow position:chr22:44397539-44398155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:15-514
               
               
               Cow position:chr22:35906289-35905757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:15-597
               
               
               Cow position:chr22:33351779-33352375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:16-296
               
               
               Cow position:chr22:6602133-6601838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):43, 242

               
               
               Conread position:16-321
               
               
               Cow position:chr22:6876190-6875887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 190

               
               
               Conread position:16-392
               
               
               Cow position:chr22:8120980-8120587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 252

               
               
               Conread position:16-544
               
               
               Cow position:chr22:12730587-12730027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 171

               
               
               Conread position:16-580
               
               
               Cow position:chr22:3305477-3304901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 120

               
               
               Conread position:16-601
               
               
               Cow position:chr22:290602-289971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 299

               
               
               Conread position:16-603
               
               
               Cow position:chr22:21035289-21034669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 349

               
               
               Conread position:16-608
               
               
               Cow position:chr22:3803287-3803912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:16-642
               
               
               Cow position:chr22:538205-538885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 297

               
               
               Conread position:16-642
               
               
               Cow position:chr22:18028386-18029046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:16-643
               
               
               Cow position:chr22:31333947-31333272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 308

               
               
               Conread position:17-484
               
               
               Cow position:chr22:18815264-18814765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 349

               
               
               Conread position:17-601
               
               
               Cow position:chr22:522293-521667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 350

               
               
               Conread position:17-601
               
               
               Cow position:chr22:6332811-6333434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 350

               
               
               Conread position:17-610
               
               
               Cow position:chr22:1281625-1281001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:17-643
               
               
               Cow position:chr22:559606-558933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 343

               
               
               Conread position:17-643
               
               
               Cow position:chr22:19142588-19141913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 314

               
               
               Conread position:17-643
               
               
               Cow position:chr22:34169440-34170111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 293

               
               
               Conread position:17-643
               
               
               Cow position:chr22:36860438-36859772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 243

               
               
               Conread position:17-643
               
               
               Cow position:chr22:37292563-37291900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:17-643
               
               
               Cow position:chr22:39468417-39467739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:17-643
               
               
               Cow position:chr22:42992275-42992946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 303

               
               
               Conread position:17-644
               
               
               Cow position:chr22:17327355-17326680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 347

               
               
               Conread position:18-643
               
               
               Cow position:chr22:6021767-6022428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 302

               
               
               Conread position:19-499
               
               
               Cow position:chr22:36184863-36185368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 344

               
               
               Conread position:19-588
               
               
               Cow position:chr22:39689597-39690165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:377
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:19-594
               
               
               Cow position:chr22:1268657-1268042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 374

               
               
               Conread position:24-433
               
               
               Cow position:chr22:6502027-6501600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:41-603
               
               
               Cow position:chr22:36270337-36270883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 5

               
               
               Conread position:65-601
               
               
               Cow position:chr22:46580561-46579994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 296

               
               
               Conread position:67-601
               
               
               Cow position:chr22:15852576-15853145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 296

               
               
               Conread position:67-601
               
               
               Cow position:chr22:35912282-35911734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:347
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 233

               
               
               Conread position:69-362
               
               
               Cow position:chr22:19536714-19537025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:69-392
               
               
               Cow position:chr22:7304493-7304154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:69-500
               
               
               Cow position:chr22:45582080-45582525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:69-504
               
               
               Cow position:chr22:13547610-13547156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 271

               
               
               Conread position:69-566
               
               
               Cow position:chr22:45510379-45509874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:336
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 293

               
               
               Conread position:69-601
               
               
               Cow position:chr22:27308614-27308054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 189

               
               
               Conread position:69-626
               
               
               Cow position:chr22:23801041-23800489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:69-642
               
               
               Cow position:chr22:11803891-11803277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr22:20239679-20239062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 295

               
               
               Conread position:69-642
               
               
               Cow position:chr22:44368310-44367705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:69-644
               
               
               Cow position:chr22:13773698-13774291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:72-313
               
               
               Cow position:chr22:34600512-34600766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):96, 237

               
               
               Conread position:73-394
               
               
               Cow position:chr22:24536928-24537268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:73-465
               
               
               Cow position:chr22:283905-283532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:73-504
               
               
               Cow position:chr22:24951721-24952177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-588
               
               
               Cow position:chr22:5936985-5936466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:351
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:73-601
               
               
               Cow position:chr22:10908672-10908113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 289

               
               
               Conread position:73-601
               
               
               Cow position:chr22:21195325-21194773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 254

               
               
               Conread position:73-601
               
               
               Cow position:chr22:44348689-44348144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 61

               
               
               Conread position:73-601
               
               
               Cow position:chr22:46585399-46584845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 284

               
               
               Conread position:73-603
               
               
               Cow position:chr22:44492219-44492774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 285

               
               
               Conread position:73-608
               
               
               Cow position:chr22:694788-695350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 281

               
               
               Conread position:73-642
               
               
               Cow position:chr22:3277193-3276580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chr22:44935136-44935739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 149

               
               
               Conread position:73-644
               
               
               Cow position:chr22:1879971-1880581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:75-599
               
               
               Cow position:chr22:13673640-13673098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:370
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:76-367
               
               
               Cow position:chr22:38550560-38550862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:76-587
               
               
               Cow position:chr22:19243571-19244090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:77-586
               
               
               Cow position:chr22:316683-317190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:77-588
               
               
               Cow position:chr22:37268336-37268876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 226

               
               
               Conread position:96-643
               
               
               Cow position:chr22:46614492-46615079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 254

               
               
               Conread position:102-642
               
               
               Cow position:chr22:35670470-35669894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:107-601
               
               
               Cow position:chr22:16202111-16202636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 255

               
               
               Conread position:121-637
               
               
               Cow position:chr22:15352094-15352636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 132

               
               
               Conread position:133-600
               
               
               Cow position:chr22:30128821-30129301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:144-600
               
               
               Cow position:chr22:30146480-30146950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 161

               
               
               Conread position:157-617
               
               
               Cow position:chr22:8737079-8736608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 76

               
               
               Conread position:157-642
               
               
               Cow position:chr22:296716-297224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:158-643
               
               
               Cow position:chr22:21590682-21591199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 182

               
               
               Conread position:158-643
               
               
               Cow position:chr22:29012000-29011498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 60

               
               
               Conread position:160-372
               
               
               Cow position:chr22:37134336-37134553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 172

               
               
               Conread position:163-580
               
               
               Cow position:chr22:10304060-10303643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:163-601
               
               
               Cow position:chr22:44518364-44517916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 78

               
               
               Conread position:165-630
               
               
               Cow position:chr22:21189676-21189209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:167-580
               
               
               Cow position:chr22:41241497-41241929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 190

               
               
               Conread position:171-582
               
               
               Cow position:chr22:19585715-19585292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 128

               
               
               Conread position:171-588
               
               
               Cow position:chr22:8664685-8664276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:177-370
               
               
               Cow position:chr22:37141441-37141633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:181-639
               
               
               Cow position:chr22:11087889-11088352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:182-643
               
               
               Cow position:chr22:44478046-44478495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:186-423
               
               
               Cow position:chr22:44458239-44458483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:194-601
               
               
               Cow position:chr22:13766664-13767087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:198-601
               
               
               Cow position:chr22:4066235-4065829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:199-603
               
               
               Cow position:chr22:30653822-30654255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:214-549
               
               
               Cow position:chr22:15053983-15054316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:216-441
               
               
               Cow position:chr22:9045598-9045824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:216-459
               
               
               Cow position:chr22:44366781-44366532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:219-603
               
               
               Cow position:chr22:11807415-11807022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 127

               
               
               Conread position:223-421
               
               
               Cow position:chr22:40370813-40371004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):166, 8

               
               
               Conread position:256-642
               
               
               Cow position:chr22:14824324-14823926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:257-626
               
               
               Cow position:chr22:870289-869911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:266-643
               
               
               Cow position:chr22:15310563-15310181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:274-601
               
               
               Cow position:chr22:36276963-36277295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):119, 49

               
               
               Conread position:274-601
               
               
               Cow position:chr22:45014736-45015069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 68

               
               
               Conread position:285-603
               
               
               Cow position:chr22:38960502-38960833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:292-641
               
               
               Cow position:chr22:23752303-23751936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:319-642
               
               
               Cow position:chr22:32283252-32282905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:327-606
               
               
               Cow position:chr22:41474265-41473977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:328-601
               
               
               Cow position:chr22:2563313-2563035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:328-601
               
               
               Cow position:chr22:5313722-5314012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:328-601
               
               
               Cow position:chr22:34601031-34601310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:339-495
               
               
               Cow position:chr22:23509054-23508892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:339-601
               
               
               Cow position:chr22:29037121-29037385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:340-595
               
               
               Cow position:chr22:15867590-15867861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:351-595
               
               
               Cow position:chr22:8120322-8120064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:360-643
               
               
               Cow position:chr22:37141988-37142283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 190

               
               
               Conread position:361-601
               
               
               Cow position:chr22:9273853-9274090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):196, 41

               
               
               Conread position:368-625
               
               
               Cow position:chr22:15955541-15955274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:372-643
               
               
               Cow position:chr22:8880584-8880874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:389-642
               
               
               Cow position:chr22:29499042-29499317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:398-612
               
               
               Cow position:chr22:46563179-46563402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):18, 215

               
               
               Conread position:400-596
               
               
               Cow position:chr22:11033851-11034061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:410-643
               
               
               Cow position:chr22:28783640-28783890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:418-601
               
               
               Cow position:chr22:1313458-1313282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:424-601
               
               
               Cow position:chr22:48274799-48274621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 139

               
               
               Conread position:425-601
               
               
               Cow position:chr22:37135304-37135485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 135

               
               
               Conread position:426-587
               
               
               Cow position:chr22:29352915-29353083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:426-643
               
               
               Cow position:chr22:18605259-18605024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:430-643
               
               
               Cow position:chr22:6501368-6501139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):75, 130

               
               
               Conread position:433-601
               
               
               Cow position:chr22:44459201-44459380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:433-642
               
               
               Cow position:chr22:21336503-21336731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:450-601
               
               
               Cow position:chr22:8325836-8325978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:460-614
               
               
               Cow position:chr22:38551445-38551604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:7-336
               
               
               Cow position:chr23:2576518-2576852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:7-643
               
               
               Cow position:chr23:22146221-22145533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 361

               
               
               Conread position:8-407
               
               
               Cow position:chr23:37716603-37717014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:8-601
               
               
               Cow position:chr23:13512199-13512794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 353

               
               
               Conread position:16-415
               
               
               Cow position:chr23:23282326-23282732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 259

               
               
               Conread position:16-454
               
               
               Cow position:chr23:14777860-14777401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):46, 304

               
               
               Conread position:16-601
               
               
               Cow position:chr23:14972876-14972235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 267

               
               
               Conread position:16-601
               
               
               Cow position:chr23:30237367-30238011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:417
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):46, 257

               
               
               Conread position:17-321
               
               
               Cow position:chr23:14963946-14963622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 51

               
               
               Conread position:17-485
               
               
               Cow position:chr23:2342189-2342675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:17-569
               
               
               Cow position:chr23:22167771-22168328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 135

               
               
               Conread position:17-632
               
               
               Cow position:chr23:965393-964736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 284

               
               
               Conread position:17-643
               
               
               Cow position:chr23:2025980-2025308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:17-643
               
               
               Cow position:chr23:2794155-2793498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 201

               
               
               Conread position:17-644
               
               
               Cow position:chr23:15178176-15178836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:17-647
               
               
               Cow position:chr23:11779885-11780556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 344

               
               
               Conread position:18-478
               
               
               Cow position:chr23:21243638-21243147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:19-395
               
               
               Cow position:chr23:25682853-25682486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 220

               
               
               Conread position:19-600
               
               
               Cow position:chr23:16498137-16497534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 227

               
               
               Conread position:19-601
               
               
               Cow position:chr23:5873474-5872852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 348

               
               
               Conread position:24-643
               
               
               Cow position:chr23:36030270-36029611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:27-644
               
               
               Cow position:chr23:29451232-29450557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:65-599
               
               
               Cow position:chr23:14263020-14263566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 273

               
               
               Conread position:67-601
               
               
               Cow position:chr23:11714712-11714146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 295

               
               
               Conread position:67-626
               
               
               Cow position:chr23:15876410-15875823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:69-309
               
               
               Cow position:chr23:14923138-14922878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-319
               
               
               Cow position:chr23:38581875-38582118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):45, 50

               
               
               Conread position:69-569
               
               
               Cow position:chr23:4513629-4514171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 300

               
               
               Conread position:69-580
               
               
               Cow position:chr23:618309-617798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:70-642
               
               
               Cow position:chr23:41142068-41141454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:73-254
               
               
               Cow position:chr23:1957050-1957243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:73-422
               
               
               Cow position:chr23:3707290-3707652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 212

               
               
               Conread position:73-429
               
               
               Cow position:chr23:11077018-11076647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:73-454
               
               
               Cow position:chr23:19949426-19949021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 286

               
               
               Conread position:73-486
               
               
               Cow position:chr23:29402555-29402132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:73-506
               
               
               Cow position:chr23:4361189-4361608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:73-580
               
               
               Cow position:chr23:16614011-16613502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 248

               
               
               Conread position:73-601
               
               
               Cow position:chr23:16054943-16055491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 182

               
               
               Conread position:73-601
               
               
               Cow position:chr23:31648857-31648311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 102

               
               
               Conread position:73-635
               
               
               Cow position:chr23:28218585-28219198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chr23:1022795-1022186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:73-643
               
               
               Cow position:chr23:3879920-3879313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 271

               
               
               Conread position:73-643
               
               
               Cow position:chr23:4889851-4890455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 244

               
               
               Conread position:73-643
               
               
               Cow position:chr23:15526732-15527353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:73-643
               
               
               Cow position:chr23:19490708-19491324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 249

               
               
               Conread position:73-643
               
               
               Cow position:chr23:20155048-20154454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 67

               
               
               Conread position:74-436
               
               
               Cow position:chr23:27400688-27401074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 241

               
               
               Conread position:74-484
               
               
               Cow position:chr23:2718477-2718909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:74-643
               
               
               Cow position:chr23:2759056-2759671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 279

               
               
               Conread position:74-643
               
               
               Cow position:chr23:4818188-4818793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 241

               
               
               Conread position:74-644
               
               
               Cow position:chr23:7045007-7044434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 68

               
               
               Conread position:78-602
               
               
               Cow position:chr23:14556001-14556530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:342
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:84-601
               
               
               Cow position:chr23:30563602-30564121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:336
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):30, 165

               
               
               Conread position:88-502
               
               
               Cow position:chr23:38691668-38692105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 182

               
               
               Conread position:88-583
               
               
               Cow position:chr23:948652-948121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:353
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:88-638
               
               
               Cow position:chr23:21822101-21821560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:117-642
               
               
               Cow position:chr23:7314114-7314683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 245

               
               
               Conread position:118-573
               
               
               Cow position:chr23:8287185-8287630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:129-642
               
               
               Cow position:chr23:1012578-1012049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:157-642
               
               
               Cow position:chr23:23172037-23172549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 190

               
               
               Conread position:163-379
               
               
               Cow position:chr23:10718760-10718541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):59, 111

               
               
               Conread position:163-643
               
               
               Cow position:chr23:4639325-4638825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:166-601
               
               
               Cow position:chr23:15218606-15218168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 65

               
               
               Conread position:167-599
               
               
               Cow position:chr23:28336806-28337238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 135

               
               
               Conread position:182-336
               
               
               Cow position:chr23:11997370-11997526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:185-643
               
               
               Cow position:chr23:38579006-38579444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:194-599
               
               
               Cow position:chr23:17878461-17878041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:240-643
               
               
               Cow position:chr23:31164152-31164574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 85

               
               
               Conread position:245-600
               
               
               Cow position:chr23:35273997-35274363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:245-601
               
               
               Cow position:chr23:1957520-1957880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:246-643
               
               
               Cow position:chr23:28304272-28304688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:260-575
               
               
               Cow position:chr23:26838188-26838510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):133, 82

               
               
               Conread position:274-642
               
               
               Cow position:chr23:32351381-32350989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:285-433
               
               
               Cow position:chr23:26159254-26159110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:292-564
               
               
               Cow position:chr23:4435051-4435336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:307-516
               
               
               Cow position:chr23:6220565-6220774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:323-642
               
               
               Cow position:chr23:608145-608485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:342-643
               
               
               Cow position:chr23:14961504-14961179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:351-573
               
               
               Cow position:chr23:25677835-25677613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:351-642
               
               
               Cow position:chr23:2439826-2439516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):155, 77

               
               
               Conread position:358-642
               
               
               Cow position:chr23:38582123-38582399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:376-586
               
               
               Cow position:chr23:23283010-23283232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:410-601
               
               
               Cow position:chr23:3707925-3708122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 174

               
               
               Conread position:418-601
               
               
               Cow position:chr23:1400675-1400489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:421-601
               
               
               Cow position:chr23:29478745-29478925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:503-644
               
               
               Cow position:chr23:1340180-1340029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):100, 141

               
               
               Conread position:7-485
               
               
               Cow position:chr24:6142264-6142756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:7-601
               
               
               Cow position:chr24:37199709-37199108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:15-643
               
               
               Cow position:chr24:14383434-14382767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:16-602
               
               
               Cow position:chr24:6659312-6658684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:16-636
               
               
               Cow position:chr24:19702685-19703342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 291

               
               
               Conread position:16-637
               
               
               Cow position:chr24:6130009-6130656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 193

               
               
               Conread position:17-338
               
               
               Cow position:chr24:37320401-37320074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 209

               
               
               Conread position:17-504
               
               
               Cow position:chr24:6407223-6407738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 324

               
               
               Conread position:17-643
               
               
               Cow position:chr24:147424-146747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr24:4414344-4413693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 274

               
               
               Conread position:17-643
               
               
               Cow position:chr24:9545250-9545918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 67

               
               
               Conread position:17-643
               
               
               Cow position:chr24:12087393-12088062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 246

               
               
               Conread position:17-643
               
               
               Cow position:chr24:19834582-19835266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 379

               
               
               Conread position:17-643
               
               
               Cow position:chr24:29188478-29189148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 308

               
               
               Conread position:18-335
               
               
               Cow position:chr24:1450615-1450937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:18-423
               
               
               Cow position:chr24:14278027-14277607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 346

               
               
               Conread position:18-471
               
               
               Cow position:chr24:14389346-14388872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 343

               
               
               Conread position:18-601
               
               
               Cow position:chr24:17409666-17410268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:18-603
               
               
               Cow position:chr24:33934575-33935199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 262

               
               
               Conread position:26-578
               
               
               Cow position:chr24:14871122-14870550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:66-580
               
               
               Cow position:chr24:6675854-6676376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):174, 10

               
               
               Conread position:66-599
               
               
               Cow position:chr24:40470125-40469563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:366
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:67-293
               
               
               Cow position:chr24:36558521-36558289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):76, 180

               
               
               Conread position:67-598
               
               
               Cow position:chr24:38638779-38639335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 271

               
               
               Conread position:67-608
               
               
               Cow position:chr24:7089723-7089184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 75

               
               
               Conread position:69-423
               
               
               Cow position:chr24:12163191-12163556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 236

               
               
               Conread position:69-504
               
               
               Cow position:chr24:19640927-19641421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:342
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:69-523
               
               
               Cow position:chr24:12699571-12699099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 283

               
               
               Conread position:69-587
               
               
               Cow position:chr24:44018754-44019304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-601
               
               
               Cow position:chr24:17370726-17370225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:355
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):76, 87

               
               
               Conread position:69-601
               
               
               Cow position:chr24:36298683-36299219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:370
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:69-642
               
               
               Cow position:chr24:7062788-7063402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr24:9090805-9090198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 289

               
               
               Conread position:70-423
               
               
               Cow position:chr24:9187495-9187120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 289

               
               
               Conread position:70-643
               
               
               Cow position:chr24:23504615-23503997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 291

               
               
               Conread position:72-637
               
               
               Cow position:chr24:13179766-13179165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:73-216
               
               
               Cow position:chr24:6085313-6085460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:73-487
               
               
               Cow position:chr24:11151987-11151548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-504
               
               
               Cow position:chr24:6435733-6436189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-578
               
               
               Cow position:chr24:5991975-5991439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 198

               
               
               Conread position:73-599
               
               
               Cow position:chr24:17321964-17322483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:73-601
               
               
               Cow position:chr24:6353395-6353944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:73-601
               
               
               Cow position:chr24:16097777-16098315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 264

               
               
               Conread position:73-601
               
               
               Cow position:chr24:17300651-17300103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 178

               
               
               Conread position:73-601
               
               
               Cow position:chr24:38585869-38585326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 286

               
               
               Conread position:73-632
               
               
               Cow position:chr24:12238542-12239141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:73-642
               
               
               Cow position:chr24:13233508-13234110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 289

               
               
               Conread position:73-643
               
               
               Cow position:chr24:6337639-6338244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 233

               
               
               Conread position:73-643
               
               
               Cow position:chr24:16561074-16560448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 296

               
               
               Conread position:73-643
               
               
               Cow position:chr24:22972343-22972927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:74-338
               
               
               Cow position:chr24:36709832-36710103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:74-637
               
               
               Cow position:chr24:35869309-35868733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 273

               
               
               Conread position:74-642
               
               
               Cow position:chr24:13189438-13190026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 278

               
               
               Conread position:75-296
               
               
               Cow position:chr24:6060449-6060685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:75-601
               
               
               Cow position:chr24:13301555-13301013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:375
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):97, 216

               
               
               Conread position:90-600
               
               
               Cow position:chr24:32847297-32847832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:358
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:92-423
               
               
               Cow position:chr24:25437564-25437900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:93-603
               
               
               Cow position:chr24:12205060-12204533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:99-343
               
               
               Cow position:chr24:10222893-10222634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:144-644
               
               
               Cow position:chr24:12127788-12127248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 223

               
               
               Conread position:146-600
               
               
               Cow position:chr24:6344270-6344726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:301
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:149-564
               
               
               Cow position:chr24:8606147-8606593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 205

               
               
               Conread position:157-573
               
               
               Cow position:chr24:310214-310649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:158-601
               
               
               Cow position:chr24:6324002-6323541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 170

               
               
               Conread position:167-599
               
               
               Cow position:chr24:40656696-40657111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):313, 77

               
               
               Conread position:167-601
               
               
               Cow position:chr24:13044271-13043818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 182

               
               
               Conread position:167-632
               
               
               Cow position:chr24:6023730-6023237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 178

               
               
               Conread position:170-585
               
               
               Cow position:chr24:4044891-4044461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 140

               
               
               Conread position:170-602
               
               
               Cow position:chr24:29352484-29352047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:171-588
               
               
               Cow position:chr24:42584390-42583974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):112, 7

               
               
               Conread position:171-601
               
               
               Cow position:chr24:22321092-22321544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 110

               
               
               Conread position:175-595
               
               
               Cow position:chr24:12569397-12569821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:179-643
               
               
               Cow position:chr24:12334359-12333876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:182-336
               
               
               Cow position:chr24:17733857-17734011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:182-601
               
               
               Cow position:chr24:25467261-25466851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):73, 66

               
               
               Conread position:189-415
               
               
               Cow position:chr24:40468431-40468661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:194-487
               
               
               Cow position:chr24:16083397-16083092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:198-538
               
               
               Cow position:chr24:17278993-17278656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 144

               
               
               Conread position:216-580
               
               
               Cow position:chr24:39492226-39491847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 326

               
               
               Conread position:216-601
               
               
               Cow position:chr24:6668327-6667949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):289, 78

               
               
               Conread position:216-601
               
               
               Cow position:chr24:14755409-14755808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:220-601
               
               
               Cow position:chr24:12108151-12107756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:224-589
               
               
               Cow position:chr24:36723249-36723630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):165, 27

               
               
               Conread position:224-601
               
               
               Cow position:chr24:12149876-12149480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 108

               
               
               Conread position:256-600
               
               
               Cow position:chr24:6036442-6036797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:259-601
               
               
               Cow position:chr24:5776943-5776592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 68

               
               
               Conread position:271-603
               
               
               Cow position:chr24:41003953-41004297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:280-642
               
               
               Cow position:chr24:6963274-6962888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 62

               
               
               Conread position:281-643
               
               
               Cow position:chr24:36558073-36557708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 61

               
               
               Conread position:313-601
               
               
               Cow position:chr24:13322344-13322632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:332-637
               
               
               Cow position:chr24:19469072-19468752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 28

               
               
               Conread position:334-643
               
               
               Cow position:chr24:20286383-20286050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:361-600
               
               
               Cow position:chr24:6060973-6061217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:398-603
               
               
               Cow position:chr24:25184806-25185016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):104, 64

               
               
               Conread position:410-643
               
               
               Cow position:chr24:40468781-40469035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:419-601
               
               
               Cow position:chr24:12163852-12164041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 166

               
               
               Conread position:422-601
               
               
               Cow position:chr24:23094401-23094214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:428-601
               
               
               Cow position:chr24:25438231-25438411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:440-601
               
               
               Cow position:chr24:24074635-24074470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:474-642
               
               
               Cow position:chr24:16082825-16082638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:16-579
               
               
               Cow position:chr25:18305295-18305888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:16-601
               
               
               Cow position:chr25:18273622-18273016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:16-642
               
               
               Cow position:chr25:11041513-11042165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 208

               
               
               Conread position:17-356
               
               
               Cow position:chr25:24659065-24658697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:17-569
               
               
               Cow position:chr25:22148687-22149281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 355

               
               
               Conread position:17-643
               
               
               Cow position:chr25:13782182-13782872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 363

               
               
               Conread position:17-643
               
               
               Cow position:chr25:34345856-34345180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 358

               
               
               Conread position:18-593
               
               
               Cow position:chr25:24216312-24215733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:18-601
               
               
               Cow position:chr25:11931630-11931012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 129

               
               
               Conread position:18-608
               
               
               Cow position:chr25:18177847-18178472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 204

               
               
               Conread position:26-608
               
               
               Cow position:chr25:26928457-26929055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:67-504
               
               
               Cow position:chr25:21902244-21902703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 155

               
               
               Conread position:69-486
               
               
               Cow position:chr25:20774162-20773721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:69-642
               
               
               Cow position:chr25:13693460-13692843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr25:15365161-15365735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 206

               
               
               Conread position:69-643
               
               
               Cow position:chr25:13062501-13061886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 292

               
               
               Conread position:72-335
               
               
               Cow position:chr25:33259914-33260164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):89, 5

               
               
               Conread position:72-482
               
               
               Cow position:chr25:26732203-26732623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:73-481
               
               
               Cow position:chr25:18192549-18192115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 290

               
               
               Conread position:73-504
               
               
               Cow position:chr25:30266706-30267158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 283

               
               
               Conread position:73-577
               
               
               Cow position:chr25:17559348-17558817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 274

               
               
               Conread position:73-601
               
               
               Cow position:chr25:17588344-17587796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 213

               
               
               Conread position:73-628
               
               
               Cow position:chr25:17655653-17656211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 174

               
               
               Conread position:73-639
               
               
               Cow position:chr25:19921744-19922361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 301

               
               
               Conread position:73-642
               
               
               Cow position:chr25:14957237-14956664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 174

               
               
               Conread position:73-642
               
               
               Cow position:chr25:27021373-27020773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 73

               
               
               Conread position:73-643
               
               
               Cow position:chr25:12941459-12940848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 289

               
               
               Conread position:73-643
               
               
               Cow position:chr25:18888529-18887919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 287

               
               
               Conread position:74-575
               
               
               Cow position:chr25:18251699-18251191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:339
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:74-598
               
               
               Cow position:chr25:18486336-18485798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:75-631
               
               
               Cow position:chr25:25507917-25508517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 307

               
               
               Conread position:76-643
               
               
               Cow position:chr25:20630844-20631449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 281

               
               
               Conread position:78-643
               
               
               Cow position:chr25:27523379-27522805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 268

               
               
               Conread position:117-614
               
               
               Cow position:chr25:12757874-12757333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 259

               
               
               Conread position:142-588
               
               
               Cow position:chr25:11830822-11830353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):22, 228

               
               
               Conread position:143-601
               
               
               Cow position:chr25:23847908-23847465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):276, 27

               
               
               Conread position:149-523
               
               
               Cow position:chr25:13794126-13793747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 164

               
               
               Conread position:162-503
               
               
               Cow position:chr25:9392948-9393301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:162-635
               
               
               Cow position:chr25:19339283-19338783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:164-645
               
               
               Cow position:chr25:35847599-35848075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:316
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:168-602
               
               
               Cow position:chr25:30149391-30148955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 25

               
               
               Conread position:176-535
               
               
               Cow position:chr25:25543248-25543607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:181-586
               
               
               Cow position:chr25:21545295-21545709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:182-597
               
               
               Cow position:chr25:10944240-10943819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):211, 48

               
               
               Conread position:188-642
               
               
               Cow position:chr25:20346641-20346158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:211-638
               
               
               Cow position:chr25:32580892-32581342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 131

               
               
               Conread position:215-473
               
               
               Cow position:chr25:33614219-33614479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:216-601
               
               
               Cow position:chr25:18450716-18451107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:278
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:217-514
               
               
               Cow position:chr25:4533126-4532831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:221-642
               
               
               Cow position:chr25:18210771-18210343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:233-601
               
               
               Cow position:chr25:16925015-16924631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:235-602
               
               
               Cow position:chr25:13772136-13771773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):192, 20

               
               
               Conread position:255-478
               
               
               Cow position:chr25:30757065-30756844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:286-601
               
               
               Cow position:chr25:35588882-35588564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:288-608
               
               
               Cow position:chr25:33575498-33575161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:313-600
               
               
               Cow position:chr25:20097895-20098185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:331-601
               
               
               Cow position:chr25:34238731-34238456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:341-635
               
               
               Cow position:chr25:2368503-2368806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:396-644
               
               
               Cow position:chr25:35627887-35627623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):111, 14

               
               
               Conread position:410-632
               
               
               Cow position:chr25:29358056-29358294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:444-643
               
               
               Cow position:chr25:28861214-28861433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:471-642
               
               
               Cow position:chr25:18192017-18191831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:503-641
               
               
               Cow position:chr25:33664449-33664313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:7-643
               
               
               Cow position:chr26:21825524-21824848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 253

               
               
               Conread position:16-233
               
               
               Cow position:chr26:9843738-9843501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:16-622
               
               
               Cow position:chr26:30588199-30587568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:16-643
               
               
               Cow position:chr26:19350356-19349685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 263

               
               
               Conread position:18-601
               
               
               Cow position:chr26:6848276-6847676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:18-643
               
               
               Cow position:chr26:5676274-5676967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 385

               
               
               Conread position:18-644
               
               
               Cow position:chr26:17325235-17325899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 306

               
               
               Conread position:60-417
               
               
               Cow position:chr26:15891625-15891271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):61, 134

               
               
               Conread position:67-643
               
               
               Cow position:chr26:4603930-4603329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 162

               
               
               Conread position:68-601
               
               
               Cow position:chr26:8646071-8646594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:346
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:68-601
               
               
               Cow position:chr26:35336958-35336408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:379
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:69-233
               
               
               Cow position:chr26:5218960-5218789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:69-445
               
               
               Cow position:chr26:8920059-8920475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 326

               
               
               Conread position:69-497
               
               
               Cow position:chr26:12666718-12667154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:69-601
               
               
               Cow position:chr26:6805838-6805285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 271

               
               
               Conread position:69-601
               
               
               Cow position:chr26:18853447-18853995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 285

               
               
               Conread position:69-632
               
               
               Cow position:chr26:2199859-2200453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 93

               
               
               Conread position:69-642
               
               
               Cow position:chr26:12587334-12586718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:69-643
               
               
               Cow position:chr26:3029620-3029003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:71-643
               
               
               Cow position:chr26:4328217-4327611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:73-601
               
               
               Cow position:chr26:17395681-17395133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 184

               
               
               Conread position:73-603
               
               
               Cow position:chr26:30783989-30784530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 179

               
               
               Conread position:73-642
               
               
               Cow position:chr26:34012903-34013493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 236

               
               
               Conread position:73-643
               
               
               Cow position:chr26:8871058-8871669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 198

               
               
               Conread position:73-643
               
               
               Cow position:chr26:14895172-14895778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 283

               
               
               Conread position:74-423
               
               
               Cow position:chr26:9561560-9561188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 261

               
               
               Conread position:77-601
               
               
               Cow position:chr26:8282577-8282033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:369
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:157-443
               
               
               Cow position:chr26:1086911-1086614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):63, 190

               
               
               Conread position:157-570
               
               
               Cow position:chr26:35369256-35369688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:157-596
               
               
               Cow position:chr26:28373909-28373450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:161-338
               
               
               Cow position:chr26:13195110-13194936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:161-601
               
               
               Cow position:chr26:11036742-11037185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:164-601
               
               
               Cow position:chr26:16478657-16479104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:165-603
               
               
               Cow position:chr26:20265252-20265685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:167-601
               
               
               Cow position:chr26:26271046-26271480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:183-586
               
               
               Cow position:chr26:8192997-8192574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:186-601
               
               
               Cow position:chr26:16856747-16856324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):47, 163

               
               
               Conread position:194-497
               
               
               Cow position:chr26:35252726-35252420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:197-503
               
               
               Cow position:chr26:12827307-12827619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 136

               
               
               Conread position:216-421
               
               
               Cow position:chr26:9843313-9843102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:216-601
               
               
               Cow position:chr26:2350820-2350417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:216-642
               
               
               Cow position:chr26:33148491-33148039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:223-528
               
               
               Cow position:chr26:8911412-8911104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 127

               
               
               Conread position:255-599
               
               
               Cow position:chr26:21708975-21708623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 104

               
               
               Conread position:256-515
               
               
               Cow position:chr26:14506903-14506631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:256-643
               
               
               Cow position:chr26:9113307-9113714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 86

               
               
               Conread position:259-504
               
               
               Cow position:chr26:34029406-34029644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:303-626
               
               
               Cow position:chr26:8086572-8086907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:318-601
               
               
               Cow position:chr26:21007624-21007926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:389-547
               
               
               Cow position:chr26:16725698-16725867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:412-601
               
               
               Cow position:chr26:9842824-9842628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:459-643
               
               
               Cow position:chr26:9560953-9560751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:465-643
               
               
               Cow position:chr26:27989628-27989439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:466-601
               
               
               Cow position:chr26:23888031-23888175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:481-643
               
               
               Cow position:chr26:13773236-13773057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:16-601
               
               
               Cow position:chr27:2377619-2378250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:401
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:17-601
               
               
               Cow position:chr27:4980475-4981097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 368

               
               
               Conread position:17-601
               
               
               Cow position:chr27:25803590-25802969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 304

               
               
               Conread position:17-614
               
               
               Cow position:chr27:1210458-1211094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 359

               
               
               Conread position:17-634
               
               
               Cow position:chr27:27664103-27664754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:17-643
               
               
               Cow position:chr27:9330837-9331519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr27:9992097-9991438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 243

               
               
               Conread position:17-643
               
               
               Cow position:chr27:15636244-15635565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 356

               
               
               Conread position:17-643
               
               
               Cow position:chr27:26326176-26326839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:18-643
               
               
               Cow position:chr27:15274960-15274292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 344

               
               
               Conread position:19-601
               
               
               Cow position:chr27:28079538-28080133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 45

               
               
               Conread position:24-625
               
               
               Cow position:chr27:8735294-8735919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 193

               
               
               Conread position:41-373
               
               
               Cow position:chr27:16425867-16426206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:41-501
               
               
               Cow position:chr27:30911371-30911847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 5

               
               
               Conread position:55-601
               
               
               Cow position:chr27:25084729-25085285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:67-586
               
               
               Cow position:chr27:16611804-16611262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:348
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):79, 54

               
               
               Conread position:67-601
               
               
               Cow position:chr27:1848181-1847659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:348
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:67-643
               
               
               Cow position:chr27:12748201-12748815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:69-218
               
               
               Cow position:chr27:14459283-14459117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-477
               
               
               Cow position:chr27:23292440-23292848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:69-502
               
               
               Cow position:chr27:19259860-19260317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 203

               
               
               Conread position:69-643
               
               
               Cow position:chr27:26554235-26553667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:72-337
               
               
               Cow position:chr27:23904828-23904549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:72-379
               
               
               Cow position:chr27:7792673-7792363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 91

               
               
               Conread position:73-453
               
               
               Cow position:chr27:16552035-16552455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):73, 83

               
               
               Conread position:73-636
               
               
               Cow position:chr27:5912084-5912686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 179

               
               
               Conread position:73-642
               
               
               Cow position:chr27:16033238-16032625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 285

               
               
               Conread position:73-643
               
               
               Cow position:chr27:3234368-3233745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 317

               
               
               Conread position:73-643
               
               
               Cow position:chr27:13898489-13899089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:74-642
               
               
               Cow position:chr27:1677414-1676795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:77-384
               
               
               Cow position:chr27:11486482-11486790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:77-601
               
               
               Cow position:chr27:25058086-25058626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:362
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 228

               
               
               Conread position:78-531
               
               
               Cow position:chr27:21335110-21335585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:310
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:88-601
               
               
               Cow position:chr27:167727-167203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 62

               
               
               Conread position:125-601
               
               
               Cow position:chr27:29855944-29856425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:333
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:142-514
               
               
               Cow position:chr27:3104987-3105369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:161-644
               
               
               Cow position:chr27:798301-797789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 188

               
               
               Conread position:163-472
               
               
               Cow position:chr27:1575868-1576187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:169-602
               
               
               Cow position:chr27:17818101-17818544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:188-603
               
               
               Cow position:chr27:23319660-23319235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:189-643
               
               
               Cow position:chr27:19524848-19525324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:218-422
               
               
               Cow position:chr27:15036028-15035823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:220-608
               
               
               Cow position:chr27:26032537-26032141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:223-566
               
               
               Cow position:chr27:21286210-21285860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:223-601
               
               
               Cow position:chr27:28892952-28893333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:238-643
               
               
               Cow position:chr27:8199158-8199586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 101

               
               
               Conread position:256-600
               
               
               Cow position:chr27:29056528-29056884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:258-554
               
               
               Cow position:chr27:1900668-1900360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:262-587
               
               
               Cow position:chr27:6160495-6160158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):131, 82

               
               
               Conread position:263-594
               
               
               Cow position:chr27:6023956-6024293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):228, 10

               
               
               Conread position:267-643
               
               
               Cow position:chr27:27194979-27194579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:339-638
               
               
               Cow position:chr27:16264595-16264297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:342-643
               
               
               Cow position:chr27:10327275-10326951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:355-621
               
               
               Cow position:chr27:16426262-16426515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:408-643
               
               
               Cow position:chr27:15035589-15035331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:502-640
               
               
               Cow position:chr27:23409548-23409680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:5-504
               
               
               Cow position:chr28:9179749-9180274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 366

               
               
               Conread position:7-601
               
               
               Cow position:chr28:17381716-17381103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:12-643
               
               
               Cow position:chr28:15034980-15034289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 282

               
               
               Conread position:12-643
               
               
               Cow position:chr28:33253455-33254125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 373

               
               
               Conread position:16-250
               
               
               Cow position:chr28:7788751-7788494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:16-601
               
               
               Cow position:chr28:1506014-1506635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 246

               
               
               Conread position:16-601
               
               
               Cow position:chr28:10646274-10645669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:16-603
               
               
               Cow position:chr28:5799443-5800062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:16-603
               
               
               Cow position:chr28:14194390-14193802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:394
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:16-603
               
               
               Cow position:chr28:22232131-22231521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:16-637
               
               
               Cow position:chr28:1386250-1385593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:16-643
               
               
               Cow position:chr28:17666159-17665505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 347

               
               
               Conread position:16-644
               
               
               Cow position:chr28:8719798-8719139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:17-315
               
               
               Cow position:chr28:28750148-28750447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:17-478
               
               
               Cow position:chr28:5567288-5567763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 236

               
               
               Conread position:17-601
               
               
               Cow position:chr28:8380212-8380806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:17-643
               
               
               Cow position:chr28:783805-784478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 297

               
               
               Conread position:17-643
               
               
               Cow position:chr28:1166731-1166072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:17-643
               
               
               Cow position:chr28:2085607-2086287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 353

               
               
               Conread position:17-643
               
               
               Cow position:chr28:5938635-5939310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr28:7003144-7003822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 357

               
               
               Conread position:17-643
               
               
               Cow position:chr28:12409086-12408401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:17-643
               
               
               Cow position:chr28:17389549-17390225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr28:18519300-18518625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr28:22260003-22259333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 346

               
               
               Conread position:17-643
               
               
               Cow position:chr28:26425107-26424439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 239

               
               
               Conread position:17-643
               
               
               Cow position:chr28:29821144-29821810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 355

               
               
               Conread position:18-321
               
               
               Cow position:chr28:10496383-10496066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):48, 255

               
               
               Conread position:19-336
               
               
               Cow position:chr28:5913307-5912990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 218

               
               
               Conread position:19-643
               
               
               Cow position:chr28:3191105-3190430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 348

               
               
               Conread position:19-643
               
               
               Cow position:chr28:5750557-5749881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 309

               
               
               Conread position:20-642
               
               
               Cow position:chr28:5765890-5766553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:22-484
               
               
               Cow position:chr28:19946542-19946063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:67-423
               
               
               Cow position:chr28:10460402-10460035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):69, 213

               
               
               Conread position:67-580
               
               
               Cow position:chr28:21566667-21567188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 52

               
               
               Conread position:67-603
               
               
               Cow position:chr28:7707486-7706928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:371
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 303

               
               
               Conread position:68-599
               
               
               Cow position:chr28:25760711-25761231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:68-638
               
               
               Cow position:chr28:15587296-15587881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 176

               
               
               Conread position:69-547
               
               
               Cow position:chr28:22236795-22236322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:331
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:69-601
               
               
               Cow position:chr28:1954563-1955124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 292

               
               
               Conread position:69-601
               
               
               Cow position:chr28:22457025-22457541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:339
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:69-642
               
               
               Cow position:chr28:484386-483772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 288

               
               
               Conread position:69-643
               
               
               Cow position:chr28:13461185-13461782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 246

               
               
               Conread position:73-564
               
               
               Cow position:chr28:5803253-5803750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:73-575
               
               
               Cow position:chr28:18146524-18146011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:73-601
               
               
               Cow position:chr28:7827199-7827747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:73-601
               
               
               Cow position:chr28:21360705-21361260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 145

               
               
               Conread position:73-602
               
               
               Cow position:chr28:25168902-25168386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:361
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:73-643
               
               
               Cow position:chr28:1216623-1216015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:73-643
               
               
               Cow position:chr28:7741655-7742255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 163

               
               
               Conread position:73-643
               
               
               Cow position:chr28:32791168-32790577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 164

               
               
               Conread position:74-600
               
               
               Cow position:chr28:523514-524065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:354
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):92, 67

               
               
               Conread position:74-601
               
               
               Cow position:chr28:7811652-7812189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:75-604
               
               
               Cow position:chr28:20634849-20634293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:356
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 236

               
               
               Conread position:75-644
               
               
               Cow position:chr28:14704172-14703560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 287

               
               
               Conread position:77-504
               
               
               Cow position:chr28:22042070-22041620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 283

               
               
               Conread position:77-642
               
               
               Cow position:chr28:6778724-6778119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 203

               
               
               Conread position:77-642
               
               
               Cow position:chr28:24590074-24590678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 281

               
               
               Conread position:78-642
               
               
               Cow position:chr28:24668828-24669419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:81-515
               
               
               Cow position:chr28:4846402-4845972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:279
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:85-514
               
               
               Cow position:chr28:29539893-29539456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:87-601
               
               
               Cow position:chr28:15684685-15685235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 99

               
               
               Conread position:88-598
               
               
               Cow position:chr28:12648450-12647925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:91-577
               
               
               Cow position:chr28:2117209-2117739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 255

               
               
               Conread position:97-644
               
               
               Cow position:chr28:10580644-10580049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 248

               
               
               Conread position:101-637
               
               
               Cow position:chr28:18100242-18099692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:125-601
               
               
               Cow position:chr28:10615721-10615238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:138-601
               
               
               Cow position:chr28:34595510-34596001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 220

               
               
               Conread position:142-503
               
               
               Cow position:chr28:9269115-9269471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:142-601
               
               
               Cow position:chr28:6786548-6786996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 207

               
               
               Conread position:157-633
               
               
               Cow position:chr28:6537504-6536998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 189

               
               
               Conread position:157-642
               
               
               Cow position:chr28:1459401-1459917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 192

               
               
               Conread position:161-375
               
               
               Cow position:chr28:24884227-24884438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:167-436
               
               
               Cow position:chr28:14752102-14752382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):54, 178

               
               
               Conread position:171-470
               
               
               Cow position:chr28:5112804-5112493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 175

               
               
               Conread position:179-643
               
               
               Cow position:chr28:10470995-10471474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:181-643
               
               
               Cow position:chr28:12151662-12152144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:185-637
               
               
               Cow position:chr28:33637876-33638362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 182

               
               
               Conread position:197-601
               
               
               Cow position:chr28:698629-699045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:216-421
               
               
               Cow position:chr28:10067960-10067759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:216-601
               
               
               Cow position:chr28:24558975-24559369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:223-634
               
               
               Cow position:chr28:1813552-1813132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 116

               
               
               Conread position:241-575
               
               
               Cow position:chr28:33384499-33384165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):170, 98

               
               
               Conread position:242-601
               
               
               Cow position:chr28:14504504-14504858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:259-417
               
               
               Cow position:chr28:6350041-6350203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 100

               
               
               Conread position:274-562
               
               
               Cow position:chr28:9715113-9714832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):146, 51

               
               
               Conread position:280-603
               
               
               Cow position:chr28:11504796-11504470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 27

               
               
               Conread position:286-601
               
               
               Cow position:chr28:5814675-5814974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 52

               
               
               Conread position:294-578
               
               
               Cow position:chr28:11489425-11489134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:296-642
               
               
               Cow position:chr28:9288402-9288769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:320-643
               
               
               Cow position:chr28:10496015-10495679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:328-642
               
               
               Cow position:chr28:7059180-7058846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:341-600
               
               
               Cow position:chr28:23023728-23023987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:342-601
               
               
               Cow position:chr28:1765477-1765746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:361-599
               
               
               Cow position:chr28:32304731-32304482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:382-642
               
               
               Cow position:chr28:31591099-31591381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:382-644
               
               
               Cow position:chr28:9295816-9295547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 203

               
               
               Conread position:395-588
               
               
               Cow position:chr28:1772943-1773143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:407-626
               
               
               Cow position:chr28:34202088-34201859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:420-643
               
               
               Cow position:chr28:10067481-10067239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 215

               
               
               Conread position:428-635
               
               
               Cow position:chr28:24884443-24884664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 153

               
               
               Conread position:443-608
               
               
               Cow position:chr28:7828197-7828360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:464-642
               
               
               Cow position:chr28:15998728-15998925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1-535
               
               
               Cow position:chr29:14085034-14084463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 285

               
               
               Conread position:2-628
               
               
               Cow position:chr29:8664617-8665269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:4-577
               
               
               Cow position:chr29:15997552-15996957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 333

               
               
               Conread position:5-642
               
               
               Cow position:chr29:609536-608862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:7-583
               
               
               Cow position:chr29:2747333-2746746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:16-643
               
               
               Cow position:chr29:23977236-23977909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:17-263
               
               
               Cow position:chr29:10822869-10822594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:17-325
               
               
               Cow position:chr29:45586268-45585955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 183

               
               
               Conread position:17-385
               
               
               Cow position:chr29:10849866-10850257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:17-392
               
               
               Cow position:chr29:10647136-10646742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 312

               
               
               Conread position:17-601
               
               
               Cow position:chr29:2840230-2839607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 347

               
               
               Conread position:17-601
               
               
               Cow position:chr29:5236130-5236757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:17-601
               
               
               Cow position:chr29:16023683-16024296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:17-601
               
               
               Cow position:chr29:40501870-40501274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 56

               
               
               Conread position:17-614
               
               
               Cow position:chr29:42803524-42804137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 214

               
               
               Conread position:17-642
               
               
               Cow position:chr29:19654741-19655403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 207

               
               
               Conread position:17-642
               
               
               Cow position:chr29:34798696-34798025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 344

               
               
               Conread position:17-643
               
               
               Cow position:chr29:47325-46675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 166

               
               
               Conread position:17-643
               
               
               Cow position:chr29:2100964-2101624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 46

               
               
               Conread position:17-643
               
               
               Cow position:chr29:20252280-20252958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 183

               
               
               Conread position:17-643
               
               
               Cow position:chr29:26163720-26163050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 365

               
               
               Conread position:17-643
               
               
               Cow position:chr29:32541208-32541880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 308

               
               
               Conread position:17-643
               
               
               Cow position:chr29:38228091-38228763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 143

               
               
               Conread position:17-643
               
               
               Cow position:chr29:39078592-39077926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 191

               
               
               Conread position:17-643
               
               
               Cow position:chr29:45205613-45206316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 285

               
               
               Conread position:18-249
               
               
               Cow position:chr29:7430104-7429839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:18-423
               
               
               Cow position:chr29:3699071-3699483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:18-601
               
               
               Cow position:chr29:5958704-5959308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 207

               
               
               Conread position:18-643
               
               
               Cow position:chr29:2465741-2465090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:24-578
               
               
               Cow position:chr29:30259400-30258843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:24-601
               
               
               Cow position:chr29:5981589-5980983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:25-388
               
               
               Cow position:chr29:14449022-14449385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:30-169
               
               
               Cow position:chr29:6009655-6009793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:67-428
               
               
               Cow position:chr29:42092932-42093315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 292

               
               
               Conread position:67-577
               
               
               Cow position:chr29:15946634-15946129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 34

               
               
               Conread position:68-601
               
               
               Cow position:chr29:24335828-24335270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:375
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):79, 234

               
               
               Conread position:69-300
               
               
               Cow position:chr29:35814801-35814550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-418
               
               
               Cow position:chr29:3328508-3328879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-483
               
               
               Cow position:chr29:42939023-42938594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 290

               
               
               Conread position:69-601
               
               
               Cow position:chr29:13622683-13622125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 56

               
               
               Conread position:69-601
               
               
               Cow position:chr29:27979751-27979188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 290

               
               
               Conread position:69-601
               
               
               Cow position:chr29:32891964-32892507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 50

               
               
               Conread position:69-614
               
               
               Cow position:chr29:32558583-32558005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 291

               
               
               Conread position:69-632
               
               
               Cow position:chr29:38207501-38206889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 299

               
               
               Conread position:69-642
               
               
               Cow position:chr29:7845561-7846176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 291

               
               
               Conread position:69-643
               
               
               Cow position:chr29:2691339-2691948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 293

               
               
               Conread position:70-454
               
               
               Cow position:chr29:18855775-18855366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 289

               
               
               Conread position:70-642
               
               
               Cow position:chr29:31182579-31183188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 291

               
               
               Conread position:72-418
               
               
               Cow position:chr29:13651227-13651578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 84

               
               
               Conread position:73-240
               
               
               Cow position:chr29:43323736-43323911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:73-283
               
               
               Cow position:chr29:9642614-9642384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:73-392
               
               
               Cow position:chr29:251925-252243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 140

               
               
               Conread position:73-452
               
               
               Cow position:chr29:21425838-21425447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 117

               
               
               Conread position:73-564
               
               
               Cow position:chr29:14587096-14587615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 285

               
               
               Conread position:73-586
               
               
               Cow position:chr29:14112720-14113253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 46

               
               
               Conread position:73-601
               
               
               Cow position:chr29:13583257-13583814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 205

               
               
               Conread position:73-601
               
               
               Cow position:chr29:16345385-16345945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 129

               
               
               Conread position:73-601
               
               
               Cow position:chr29:45460920-45461479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 286

               
               
               Conread position:73-642
               
               
               Cow position:chr29:19622104-19621482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 286

               
               
               Conread position:73-643
               
               
               Cow position:chr29:6264822-6264213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 78

               
               
               Conread position:73-643
               
               
               Cow position:chr29:25931352-25930732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 241

               
               
               Conread position:74-514
               
               
               Cow position:chr29:14097943-14098386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:77-630
               
               
               Cow position:chr29:6213703-6214258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:365
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:84-340
               
               
               Cow position:chr29:35190475-35190218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:87-601
               
               
               Cow position:chr29:3176229-3175722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:90-604
               
               
               Cow position:chr29:2949164-2948640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 124

               
               
               Conread position:93-601
               
               
               Cow position:chr29:36635191-36634651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 260

               
               
               Conread position:98-637
               
               
               Cow position:chr29:19953829-19954385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:109-642
               
               
               Cow position:chr29:16172882-16172322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:125-603
               
               
               Cow position:chr29:647052-647542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:127-502
               
               
               Cow position:chr29:29503024-29502632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 227

               
               
               Conread position:132-601
               
               
               Cow position:chr29:35298158-35298643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 142

               
               
               Conread position:138-599
               
               
               Cow position:chr29:36596825-36596344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:142-608
               
               
               Cow position:chr29:4633373-4632902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 200

               
               
               Conread position:144-643
               
               
               Cow position:chr29:14210291-14209766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:157-444
               
               
               Cow position:chr29:6198483-6198189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 189

               
               
               Conread position:157-601
               
               
               Cow position:chr29:19888855-19889316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:157-601
               
               
               Cow position:chr29:21431582-21431119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 158

               
               
               Conread position:157-642
               
               
               Cow position:chr29:10023062-10022546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:157-642
               
               
               Cow position:chr29:27180483-27179967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 192

               
               
               Conread position:161-538
               
               
               Cow position:chr29:27262441-27262042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:162-482
               
               
               Cow position:chr29:12793509-12793845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 83

               
               
               Conread position:163-643
               
               
               Cow position:chr29:409973-409476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 184

               
               
               Conread position:171-642
               
               
               Cow position:chr29:13851590-13851092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 179

               
               
               Conread position:178-464
               
               
               Cow position:chr29:4516856-4517149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:181-601
               
               
               Cow position:chr29:32287541-32287979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:185-575
               
               
               Cow position:chr29:37165390-37165790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):45, 134

               
               
               Conread position:199-503
               
               
               Cow position:chr29:38619562-38619253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:216-585
               
               
               Cow position:chr29:16661343-16661714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:216-601
               
               
               Cow position:chr29:2146448-2146053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:217-643
               
               
               Cow position:chr29:43324858-43325303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 80

               
               
               Conread position:241-643
               
               
               Cow position:chr29:7429764-7429334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 99

               
               
               Conread position:255-470
               
               
               Cow position:chr29:6568704-6568488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:255-475
               
               
               Cow position:chr29:38713045-38713265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):137, 84

               
               
               Conread position:256-642
               
               
               Cow position:chr29:19526910-19526500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:266-643
               
               
               Cow position:chr29:10822531-10822132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 82

               
               
               Conread position:274-644
               
               
               Cow position:chr29:9641392-9640998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 86

               
               
               Conread position:293-601
               
               
               Cow position:chr29:801174-800854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:295-643
               
               
               Cow position:chr29:13018113-13018476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:302-588
               
               
               Cow position:chr29:32038285-32038583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:330-643
               
               
               Cow position:chr29:27812547-27812869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):136, 47

               
               
               Conread position:332-601
               
               
               Cow position:chr29:34874499-34874767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:350-603
               
               
               Cow position:chr29:45624861-45625125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:359-601
               
               
               Cow position:chr29:29704188-29703930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:373-637
               
               
               Cow position:chr29:9082385-9082107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:396-601
               
               
               Cow position:chr29:252482-252694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:410-601
               
               
               Cow position:chr29:15625186-15624989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:414-643
               
               
               Cow position:chr29:17406665-17406910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:424-603
               
               
               Cow position:chr29:42204646-42204832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:426-643
               
               
               Cow position:chr29:10645859-10645625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:429-601
               
               
               Cow position:chr29:14452421-14452598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:444-601
               
               
               Cow position:chr29:21422126-21421966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:2-481
               
               
               Cow position:chr3:37952980-37952478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:326
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:4-601
               
               
               Cow position:chr3:4736859-4736276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:5-318
               
               
               Cow position:chr3:36118907-36119234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:5-601
               
               
               Cow position:chr3:3524036-3524660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 258

               
               
               Conread position:5-601
               
               
               Cow position:chr3:7247556-7248181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 373

               
               
               Conread position:5-642
               
               
               Cow position:chr3:74058543-74059227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:7-601
               
               
               Cow position:chr3:65208213-65208824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 229

               
               
               Conread position:7-642
               
               
               Cow position:chr3:2869807-2870490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 366

               
               
               Conread position:7-642
               
               
               Cow position:chr3:20382042-20382737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 389

               
               
               Conread position:7-642
               
               
               Cow position:chr3:66889953-66889266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 282

               
               
               Conread position:8-643
               
               
               Cow position:chr3:45975515-45976201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:12-643
               
               
               Cow position:chr3:49136550-49135863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 360

               
               
               Conread position:12-643
               
               
               Cow position:chr3:72631085-72631758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:13-643
               
               
               Cow position:chr3:5884555-5885204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 204

               
               
               Conread position:16-190
               
               
               Cow position:chr3:19945269-19945445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:16-282
               
               
               Cow position:chr3:15181387-15181676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:16-485
               
               
               Cow position:chr3:3057829-3058339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 361

               
               
               Conread position:16-514
               
               
               Cow position:chr3:63002515-63002006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:16-573
               
               
               Cow position:chr3:2906748-2906136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 344

               
               
               Conread position:16-593
               
               
               Cow position:chr3:6877139-6876547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:16-601
               
               
               Cow position:chr3:6686835-6687436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:16-608
               
               
               Cow position:chr3:67164313-67164942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 362

               
               
               Conread position:16-642
               
               
               Cow position:chr3:38494264-38494941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 372

               
               
               Conread position:16-643
               
               
               Cow position:chr3:24445050-24444399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 210

               
               
               Conread position:17-377
               
               
               Cow position:chr3:33845652-33845279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:17-401
               
               
               Cow position:chr3:56339388-56338980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):44, 273

               
               
               Conread position:17-406
               
               
               Cow position:chr3:59862405-59862816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 226

               
               
               Conread position:17-601
               
               
               Cow position:chr3:46017072-46017690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:17-601
               
               
               Cow position:chr3:56146340-56146953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:17-642
               
               
               Cow position:chr3:30617896-30617222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr3:2709843-2709168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:17-643
               
               
               Cow position:chr3:18812528-18813201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 345

               
               
               Conread position:17-643
               
               
               Cow position:chr3:19755908-19755262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 224

               
               
               Conread position:17-643
               
               
               Cow position:chr3:30315585-30316249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 162

               
               
               Conread position:17-643
               
               
               Cow position:chr3:42448135-42448808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 355

               
               
               Conread position:17-643
               
               
               Cow position:chr3:48058329-48057659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 343

               
               
               Conread position:17-643
               
               
               Cow position:chr3:49544181-49543510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 340

               
               
               Conread position:17-643
               
               
               Cow position:chr3:57483703-57483024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 354

               
               
               Conread position:17-643
               
               
               Cow position:chr3:64016346-64015682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 364

               
               
               Conread position:17-644
               
               
               Cow position:chr3:595164-595828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 349

               
               
               Conread position:18-423
               
               
               Cow position:chr3:10240688-10241114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 246

               
               
               Conread position:18-571
               
               
               Cow position:chr3:52653617-52653043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 231

               
               
               Conread position:18-601
               
               
               Cow position:chr3:15054645-15054056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:18-601
               
               
               Cow position:chr3:24458142-24457532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:404
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:18-601
               
               
               Cow position:chr3:36877631-36877011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 354

               
               
               Conread position:18-643
               
               
               Cow position:chr3:68872721-68872053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 344

               
               
               Conread position:19-580
               
               
               Cow position:chr3:18354977-18354405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:19-601
               
               
               Cow position:chr3:24644261-24644862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:19-601
               
               
               Cow position:chr3:68698938-68698326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 340

               
               
               Conread position:19-604
               
               
               Cow position:chr3:50916369-50916989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:19-643
               
               
               Cow position:chr3:7478893-7478225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 356

               
               
               Conread position:21-337
               
               
               Cow position:chr3:33634138-33634481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:24-601
               
               
               Cow position:chr3:77424655-77425240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:24-643
               
               
               Cow position:chr3:23289296-23288632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:27-282
               
               
               Cow position:chr3:42052121-42051850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:27-373
               
               
               Cow position:chr3:24588411-24588058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:27-583
               
               
               Cow position:chr3:53412178-53412760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:27-621
               
               
               Cow position:chr3:2854406-2853779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:64-643
               
               
               Cow position:chr3:78026328-78025720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 5

               
               
               Conread position:66-600
               
               
               Cow position:chr3:60263936-60263370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:361
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 52

               
               
               Conread position:67-310
               
               
               Cow position:chr3:24347045-24347295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:67-404
               
               
               Cow position:chr3:56398265-56398620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:67-521
               
               
               Cow position:chr3:64823187-64823666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 292

               
               
               Conread position:67-575
               
               
               Cow position:chr3:29579711-29580232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 153

               
               
               Conread position:68-564
               
               
               Cow position:chr3:56100598-56100078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 260

               
               
               Conread position:68-642
               
               
               Cow position:chr3:27919511-27920108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 291

               
               
               Conread position:69-250
               
               
               Cow position:chr3:42720607-42720412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:69-300
               
               
               Cow position:chr3:48229387-48229139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:69-373
               
               
               Cow position:chr3:70888225-70888539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):74, 152

               
               
               Conread position:69-472
               
               
               Cow position:chr3:48843339-48843769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 292

               
               
               Conread position:69-502
               
               
               Cow position:chr3:33843729-33843287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:69-588
               
               
               Cow position:chr3:2368252-2367703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 203

               
               
               Conread position:69-601
               
               
               Cow position:chr3:4287174-4287735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 203

               
               
               Conread position:69-601
               
               
               Cow position:chr3:30331036-30330494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 294

               
               
               Conread position:69-601
               
               
               Cow position:chr3:36863373-36862809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-601
               
               
               Cow position:chr3:45033828-45034388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:69-601
               
               
               Cow position:chr3:47087388-47087926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 187

               
               
               Conread position:69-601
               
               
               Cow position:chr3:56295273-56295834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 125

               
               
               Conread position:69-632
               
               
               Cow position:chr3:18860502-18861112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 293

               
               
               Conread position:69-641
               
               
               Cow position:chr3:1742418-1743031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 201

               
               
               Conread position:69-642
               
               
               Cow position:chr3:7157635-7157017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:69-642
               
               
               Cow position:chr3:29330204-29329588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 292

               
               
               Conread position:69-642
               
               
               Cow position:chr3:64651722-64652310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 290

               
               
               Conread position:69-643
               
               
               Cow position:chr3:46503643-46504251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 146

               
               
               Conread position:69-644
               
               
               Cow position:chr3:34506258-34505651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 202

               
               
               Conread position:70-642
               
               
               Cow position:chr3:2918553-2919166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 291

               
               
               Conread position:72-430
               
               
               Cow position:chr3:6662447-6662801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 161

               
               
               Conread position:72-642
               
               
               Cow position:chr3:5993997-5993387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 291

               
               
               Conread position:73-238
               
               
               Cow position:chr3:56635688-56635863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:73-238
               
               
               Cow position:chr3:64356709-64356526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:73-363
               
               
               Cow position:chr3:31319254-31319556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:73-423
               
               
               Cow position:chr3:38867407-38867778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 285

               
               
               Conread position:73-551
               
               
               Cow position:chr3:47080321-47079811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-588
               
               
               Cow position:chr3:31416109-31416652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 242

               
               
               Conread position:73-601
               
               
               Cow position:chr3:6783457-6784017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 142

               
               
               Conread position:73-601
               
               
               Cow position:chr3:19800083-19799530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 285

               
               
               Conread position:73-601
               
               
               Cow position:chr3:55892506-55893037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 39

               
               
               Conread position:73-601
               
               
               Cow position:chr3:64027046-64026489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chr3:19879735-19880346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 296

               
               
               Conread position:73-642
               
               
               Cow position:chr3:32621950-32621340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 230

               
               
               Conread position:73-642
               
               
               Cow position:chr3:37970135-37970747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chr3:41209513-41208911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chr3:46860201-46859592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 291

               
               
               Conread position:73-643
               
               
               Cow position:chr3:21181605-21180996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 287

               
               
               Conread position:73-643
               
               
               Cow position:chr3:53516693-53517311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 242

               
               
               Conread position:73-644
               
               
               Cow position:chr3:3840420-3839816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 219

               
               
               Conread position:73-644
               
               
               Cow position:chr3:40824482-40825094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 138

               
               
               Conread position:74-412
               
               
               Cow position:chr3:19939983-19940338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:74-549
               
               
               Cow position:chr3:18943124-18943613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 185

               
               
               Conread position:74-619
               
               
               Cow position:chr3:39879919-39879363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:75-601
               
               
               Cow position:chr3:72671434-72670903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:76-504
               
               
               Cow position:chr3:13476486-13476911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:77-529
               
               
               Cow position:chr3:51939006-51938527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 285

               
               
               Conread position:77-600
               
               
               Cow position:chr3:51364693-51364141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 285

               
               
               Conread position:77-601
               
               
               Cow position:chr3:19832822-19832271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:362
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:78-642
               
               
               Cow position:chr3:40339053-40338446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 283

               
               
               Conread position:89-599
               
               
               Cow position:chr3:67768937-67769454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:92-382
               
               
               Cow position:chr3:57979506-57979221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:112-603
               
               
               Cow position:chr3:58948668-58949179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 243

               
               
               Conread position:118-423
               
               
               Cow position:chr3:34198025-34198333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:125-380
               
               
               Cow position:chr3:55486143-55486408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:142-492
               
               
               Cow position:chr3:73529650-73530002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:142-643
               
               
               Cow position:chr3:63241075-63240542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:144-504
               
               
               Cow position:chr3:65208049-65207678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 203

               
               
               Conread position:150-643
               
               
               Cow position:chr3:23206700-23206174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:157-418
               
               
               Cow position:chr3:2509854-2509586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:157-596
               
               
               Cow position:chr3:18462646-18462202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 187

               
               
               Conread position:157-601
               
               
               Cow position:chr3:44925247-44925711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 193

               
               
               Conread position:157-640
               
               
               Cow position:chr3:56327299-56327806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:157-644
               
               
               Cow position:chr3:29575938-29575422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:161-602
               
               
               Cow position:chr3:16887694-16887246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):52, 140

               
               
               Conread position:163-492
               
               
               Cow position:chr3:6495682-6496021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:164-601
               
               
               Cow position:chr3:7313271-7312828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:164-601
               
               
               Cow position:chr3:34029716-34029271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 63

               
               
               Conread position:167-587
               
               
               Cow position:chr3:8239895-8240326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 144

               
               
               Conread position:167-614
               
               
               Cow position:chr3:19720460-19719997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 180

               
               
               Conread position:171-492
               
               
               Cow position:chr3:16898989-16898668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:180-390
               
               
               Cow position:chr3:40616635-40616422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 164

               
               
               Conread position:180-600
               
               
               Cow position:chr3:16076574-16076991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:181-608
               
               
               Cow position:chr3:66621411-66621851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:182-599
               
               
               Cow position:chr3:4667312-4667740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):160, 59

               
               
               Conread position:188-603
               
               
               Cow position:chr3:24354378-24354797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:188-643
               
               
               Cow position:chr3:5952964-5952485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:197-497
               
               
               Cow position:chr3:57658530-57658831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 140

               
               
               Conread position:200-601
               
               
               Cow position:chr3:75184665-75185054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:215-602
               
               
               Cow position:chr3:51138555-51138937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:216-336
               
               
               Cow position:chr3:83231676-83231560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:216-513
               
               
               Cow position:chr3:29338654-29338350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:216-558
               
               
               Cow position:chr3:84197071-84197421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:216-601
               
               
               Cow position:chr3:79122348-79121960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:216-602
               
               
               Cow position:chr3:43481046-43481436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 124

               
               
               Conread position:217-603
               
               
               Cow position:chr3:32200271-32200667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:232-585
               
               
               Cow position:chr3:62503391-62503757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:235-593
               
               
               Cow position:chr3:74851857-74851508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:241-603
               
               
               Cow position:chr3:27864454-27864823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 101

               
               
               Conread position:241-642
               
               
               Cow position:chr3:68891292-68890875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 10

               
               
               Conread position:246-514
               
               
               Cow position:chr3:73302551-73302816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):147, 100

               
               
               Conread position:254-642
               
               
               Cow position:chr3:16224176-16224587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 5

               
               
               Conread position:256-593
               
               
               Cow position:chr3:34090191-34089840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):164, 94

               
               
               Conread position:256-601
               
               
               Cow position:chr3:18558120-18558465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:279-582
               
               
               Cow position:chr3:53927843-53927537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):58, 46

               
               
               Conread position:292-601
               
               
               Cow position:chr3:54291251-54290933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:303-601
               
               
               Cow position:chr3:19945583-19945899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 39

               
               
               Conread position:315-643
               
               
               Cow position:chr3:69932483-69932132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:328-644
               
               
               Cow position:chr3:8438403-8438738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:349-643
               
               
               Cow position:chr3:43191908-43191590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:359-612
               
               
               Cow position:chr3:48229121-48228857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 179

               
               
               Conread position:367-642
               
               
               Cow position:chr3:51857290-51856989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:389-601
               
               
               Cow position:chr3:56338846-56338622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:402-602
               
               
               Cow position:chr3:21028177-21027969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 165

               
               
               Conread position:403-601
               
               
               Cow position:chr3:19940371-19940578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:404-601
               
               
               Cow position:chr3:4029174-4029381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:405-601
               
               
               Cow position:chr3:2509423-2509226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:417-601
               
               
               Cow position:chr3:64356508-64356317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:419-599
               
               
               Cow position:chr3:15188269-15188456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:421-643
               
               
               Cow position:chr3:59863024-59863264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:426-642
               
               
               Cow position:chr3:58784689-58784454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:426-643
               
               
               Cow position:chr3:10242120-10242355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:427-643
               
               
               Cow position:chr3:25687716-25687948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:433-643
               
               
               Cow position:chr3:38868061-38868293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:467-597
               
               
               Cow position:chr3:38095464-38095601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:473-601
               
               
               Cow position:chr3:3058526-3058653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:1-504
               
               
               Cow position:chr4:27300670-27300168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:362
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 185

               
               
               Conread position:12-423
               
               
               Cow position:chr4:61693689-61693253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 248

               
               
               Conread position:13-599
               
               
               Cow position:chr4:14755837-14755225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 90

               
               
               Conread position:15-643
               
               
               Cow position:chr4:17925132-17924456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 349

               
               
               Conread position:16-460
               
               
               Cow position:chr4:493766-493331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:16-573
               
               
               Cow position:chr4:9847381-9846783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 355

               
               
               Conread position:16-597
               
               
               Cow position:chr4:14820026-14819457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:16-601
               
               
               Cow position:chr4:16360747-16361373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 220

               
               
               Conread position:16-601
               
               
               Cow position:chr4:34178404-34177804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 250

               
               
               Conread position:16-643
               
               
               Cow position:chr4:13494162-13494837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 346

               
               
               Conread position:17-251
               
               
               Cow position:chr4:41333522-41333774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:17-268
               
               
               Cow position:chr4:31564471-31564212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 175

               
               
               Conread position:17-515
               
               
               Cow position:chr4:37597-37087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:17-601
               
               
               Cow position:chr4:5926005-5925406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:407
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:17-635
               
               
               Cow position:chr4:12588164-12588816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 212

               
               
               Conread position:17-643
               
               
               Cow position:chr4:356744-357410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 324

               
               
               Conread position:17-643
               
               
               Cow position:chr4:1049424-1048759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 280

               
               
               Conread position:17-643
               
               
               Cow position:chr4:12240384-12239729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 347

               
               
               Conread position:17-643
               
               
               Cow position:chr4:16639446-16640115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:17-643
               
               
               Cow position:chr4:25598664-25597981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:17-643
               
               
               Cow position:chr4:26876947-26876284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 246

               
               
               Conread position:17-643
               
               
               Cow position:chr4:33071985-33071334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:17-643
               
               
               Cow position:chr4:36897209-36897878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 305

               
               
               Conread position:17-643
               
               
               Cow position:chr4:43881940-43882607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr4:57984820-57985496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:18-563
               
               
               Cow position:chr4:13870844-13871382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 6

               
               
               Conread position:18-643
               
               
               Cow position:chr4:34183789-34183173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:24-290
               
               
               Cow position:chr4:28832408-28832676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:24-325
               
               
               Cow position:chr4:11110436-11110117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 293

               
               
               Conread position:24-534
               
               
               Cow position:chr4:54969571-54970091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 221

               
               
               Conread position:27-482
               
               
               Cow position:chr4:69521386-69521845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:65-601
               
               
               Cow position:chr4:6206493-6207051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 188

               
               
               Conread position:69-354
               
               
               Cow position:chr4:68110137-68109837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 235

               
               
               Conread position:69-498
               
               
               Cow position:chr4:45106354-45106809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 283

               
               
               Conread position:69-621
               
               
               Cow position:chr4:38930299-38930861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 152

               
               
               Conread position:69-642
               
               
               Cow position:chr4:30472126-30472718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:69-644
               
               
               Cow position:chr4:5881050-5881660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 218

               
               
               Conread position:70-514
               
               
               Cow position:chr4:51042399-51041933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 265

               
               
               Conread position:72-334
               
               
               Cow position:chr4:41428206-41428486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:72-642
               
               
               Cow position:chr4:18337749-18338358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 286

               
               
               Conread position:73-387
               
               
               Cow position:chr4:46665424-46665757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 247

               
               
               Conread position:73-601
               
               
               Cow position:chr4:1929743-1929190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-601
               
               
               Cow position:chr4:6615225-6614674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:357
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 269

               
               
               Conread position:73-601
               
               
               Cow position:chr4:19005411-19004879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:73-601
               
               
               Cow position:chr4:41959793-41960351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 288

               
               
               Conread position:73-601
               
               
               Cow position:chr4:42405505-42406067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 288

               
               
               Conread position:73-601
               
               
               Cow position:chr4:44780327-44779769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 285

               
               
               Conread position:73-601
               
               
               Cow position:chr4:60263262-60262719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 201

               
               
               Conread position:73-626
               
               
               Cow position:chr4:43672420-43672979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:367
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):152, 44

               
               
               Conread position:73-632
               
               
               Cow position:chr4:4416957-4417545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 147

               
               
               Conread position:73-642
               
               
               Cow position:chr4:160060-160662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 276

               
               
               Conread position:73-642
               
               
               Cow position:chr4:530302-530923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:73-642
               
               
               Cow position:chr4:3126702-3127315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 307

               
               
               Conread position:73-642
               
               
               Cow position:chr4:5443934-5443320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 287

               
               
               Conread position:73-642
               
               
               Cow position:chr4:6567284-6567884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 239

               
               
               Conread position:73-642
               
               
               Cow position:chr4:18423625-18423017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 46

               
               
               Conread position:73-642
               
               
               Cow position:chr4:32213062-32213677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 307

               
               
               Conread position:73-643
               
               
               Cow position:chr4:6489466-6488863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 275

               
               
               Conread position:73-643
               
               
               Cow position:chr4:10882449-10883042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:73-643
               
               
               Cow position:chr4:41191705-41191127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 241

               
               
               Conread position:73-643
               
               
               Cow position:chr4:43318742-43318131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 288

               
               
               Conread position:73-643
               
               
               Cow position:chr4:44726485-44727083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 153

               
               
               Conread position:73-644
               
               
               Cow position:chr4:99318-98708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 299

               
               
               Conread position:74-423
               
               
               Cow position:chr4:4178155-4178511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:74-584
               
               
               Cow position:chr4:22474248-22474756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:355
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:74-601
               
               
               Cow position:chr4:41955659-41956215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:74-601
               
               
               Cow position:chr4:57957895-57958403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 55

               
               
               Conread position:77-642
               
               
               Cow position:chr4:17092963-17092359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 282

               
               
               Conread position:77-643
               
               
               Cow position:chr4:67682096-67682703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 279

               
               
               Conread position:78-602
               
               
               Cow position:chr4:20604632-20605132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 68

               
               
               Conread position:80-478
               
               
               Cow position:chr4:39268245-39267844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:92-601
               
               
               Cow position:chr4:13958094-13958623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:96-601
               
               
               Cow position:chr4:9355298-9355831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 250

               
               
               Conread position:112-503
               
               
               Cow position:chr4:47486249-47486659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 224

               
               
               Conread position:118-370
               
               
               Cow position:chr4:14138983-14139248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:120-573
               
               
               Cow position:chr4:20067775-20067303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 145

               
               
               Conread position:142-601
               
               
               Cow position:chr4:47522326-47522800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 191

               
               
               Conread position:154-415
               
               
               Cow position:chr4:52268791-52268525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 155

               
               
               Conread position:157-601
               
               
               Cow position:chr4:65665405-65664960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 192

               
               
               Conread position:158-481
               
               
               Cow position:chr4:47462812-47463144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:161-626
               
               
               Cow position:chr4:52963126-52962659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:161-642
               
               
               Cow position:chr4:31638923-31638425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:337
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:162-425
               
               
               Cow position:chr4:42926042-42925772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 156

               
               
               Conread position:163-600
               
               
               Cow position:chr4:22027445-22027003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:163-643
               
               
               Cow position:chr4:33494550-33495060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:164-603
               
               
               Cow position:chr4:49716780-49717233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:165-587
               
               
               Cow position:chr4:50806517-50806931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:165-642
               
               
               Cow position:chr4:63428026-63427545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:167-601
               
               
               Cow position:chr4:6865503-6865056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 140

               
               
               Conread position:170-594
               
               
               Cow position:chr4:6519837-6520234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:171-601
               
               
               Cow position:chr4:21359233-21359684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 177

               
               
               Conread position:171-601
               
               
               Cow position:chr4:33596543-33596971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:174-601
               
               
               Cow position:chr4:1952562-1952115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:178-642
               
               
               Cow position:chr4:37988351-37988841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:340
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:181-612
               
               
               Cow position:chr4:60627848-60627414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:182-434
               
               
               Cow position:chr4:19742902-19742652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:182-626
               
               
               Cow position:chr4:46200691-46200252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):207, 30

               
               
               Conread position:182-642
               
               
               Cow position:chr4:17502317-17501826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:191-603
               
               
               Cow position:chr4:27334954-27335393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 158

               
               
               Conread position:191-642
               
               
               Cow position:chr4:14386844-14387327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 158

               
               
               Conread position:194-601
               
               
               Cow position:chr4:28653466-28653043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 162

               
               
               Conread position:200-631
               
               
               Cow position:chr4:16060317-16060772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:216-466
               
               
               Cow position:chr4:39932000-39932255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:216-482
               
               
               Cow position:chr4:31564230-31563957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 125

               
               
               Conread position:216-580
               
               
               Cow position:chr4:18475904-18475533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:216-601
               
               
               Cow position:chr4:21258216-21258628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):173, 15

               
               
               Conread position:216-602
               
               
               Cow position:chr4:50847844-50847450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:216-642
               
               
               Cow position:chr4:604683-605131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:218-601
               
               
               Cow position:chr4:20236342-20235945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:238-601
               
               
               Cow position:chr4:19094063-19094430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):177, 35

               
               
               Conread position:245-643
               
               
               Cow position:chr4:3356849-3356429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 87

               
               
               Conread position:255-603
               
               
               Cow position:chr4:65916372-65916716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):248, 61

               
               
               Conread position:256-441
               
               
               Cow position:chr4:25735564-25735743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 83

               
               
               Conread position:257-601
               
               
               Cow position:chr4:34221844-34222200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):136, 48

               
               
               Conread position:259-601
               
               
               Cow position:chr4:952047-952390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 59

               
               
               Conread position:260-601
               
               
               Cow position:chr4:8702667-8703005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:268-637
               
               
               Cow position:chr4:11813215-11813585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 81

               
               
               Conread position:275-606
               
               
               Cow position:chr4:52230157-52229828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:280-643
               
               
               Cow position:chr4:28832840-28833219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 7

               
               
               Conread position:281-601
               
               
               Cow position:chr4:41978275-41977935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:289-614
               
               
               Cow position:chr4:18102530-18102187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 53

               
               
               Conread position:292-642
               
               
               Cow position:chr4:33022505-33022134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:293-575
               
               
               Cow position:chr4:64216539-64216262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):180, 45

               
               
               Conread position:318-600
               
               
               Cow position:chr4:61986120-61985828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:328-601
               
               
               Cow position:chr4:11109902-11109625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:339-642
               
               
               Cow position:chr4:6268011-6267686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:347-637
               
               
               Cow position:chr4:44742057-44741766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:360-642
               
               
               Cow position:chr4:827405-827713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:365-601
               
               
               Cow position:chr4:17244308-17244558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:367-643
               
               
               Cow position:chr4:48028065-48028363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:373-599
               
               
               Cow position:chr4:14139588-14139821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:399-601
               
               
               Cow position:chr4:20241759-20241972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:420-607
               
               
               Cow position:chr4:63199210-63199012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:425-642
               
               
               Cow position:chr4:60649711-60649952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:426-601
               
               
               Cow position:chr4:68837728-68837545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:428-599
               
               
               Cow position:chr4:43867466-43867644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:428-638
               
               
               Cow position:chr4:46666192-46666409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):78, 162

               
               
               Conread position:433-601
               
               
               Cow position:chr4:67797627-67797455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:460-643
               
               
               Cow position:chr4:43898238-43898033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:495-643
               
               
               Cow position:chr4:27296440-27296285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-644
               
               
               Cow position:chr5:46668856-46669535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:2-601
               
               
               Cow position:chr5:37733270-37733908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:7-373
               
               
               Cow position:chr5:60716688-60716306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 47

               
               
               Conread position:12-643
               
               
               Cow position:chr5:7274770-7275437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:16-291
               
               
               Cow position:chr5:24107754-24107457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 205

               
               
               Conread position:16-415
               
               
               Cow position:chr5:12642815-12642387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 370

               
               
               Conread position:16-520
               
               
               Cow position:chr5:49519490-49520015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 303

               
               
               Conread position:16-584
               
               
               Cow position:chr5:34297871-34298432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 144

               
               
               Conread position:16-601
               
               
               Cow position:chr5:31100493-31099881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 345

               
               
               Conread position:16-601
               
               
               Cow position:chr5:46004926-46004322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:16-601
               
               
               Cow position:chr5:46664947-46665552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:16-642
               
               
               Cow position:chr5:50870558-50871215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 301

               
               
               Conread position:16-644
               
               
               Cow position:chr5:41527862-41527193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:16-647
               
               
               Cow position:chr5:45701245-45701929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:17-315
               
               
               Cow position:chr5:14344500-14344182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 287

               
               
               Conread position:17-362
               
               
               Cow position:chr5:20311420-20311053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 312

               
               
               Conread position:17-436
               
               
               Cow position:chr5:34697535-34697980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 296

               
               
               Conread position:17-558
               
               
               Cow position:chr5:1341102-1340534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 345

               
               
               Conread position:17-638
               
               
               Cow position:chr5:4386174-4386825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:17-638
               
               
               Cow position:chr5:57481608-57480939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 202

               
               
               Conread position:17-643
               
               
               Cow position:chr5:3503175-3502498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr5:3786858-3787545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 380

               
               
               Conread position:17-643
               
               
               Cow position:chr5:6153972-6153289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 374

               
               
               Conread position:17-643
               
               
               Cow position:chr5:46737646-46736986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 154

               
               
               Conread position:17-643
               
               
               Cow position:chr5:48807808-48807124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 292

               
               
               Conread position:17-643
               
               
               Cow position:chr5:55628922-55629591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 353

               
               
               Conread position:17-643
               
               
               Cow position:chr5:64781085-64780406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 369

               
               
               Conread position:17-644
               
               
               Cow position:chr5:59283247-59283910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 353

               
               
               Conread position:18-242
               
               
               Cow position:chr5:41956437-41956206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:18-601
               
               
               Cow position:chr5:18400759-18400149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 310

               
               
               Conread position:18-643
               
               
               Cow position:chr5:18560471-18559802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 345

               
               
               Conread position:19-573
               
               
               Cow position:chr5:15375649-15376213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:19-602
               
               
               Cow position:chr5:9038175-9037591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:387
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:20-643
               
               
               Cow position:chr5:14784424-14783776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 50

               
               
               Conread position:24-643
               
               
               Cow position:chr5:30580277-30580943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:67-375
               
               
               Cow position:chr5:26980457-26980756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):127, 35

               
               
               Conread position:67-548
               
               
               Cow position:chr5:61081223-61080707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 21

               
               
               Conread position:67-601
               
               
               Cow position:chr5:18121493-18120927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 295

               
               
               Conread position:67-642
               
               
               Cow position:chr5:18273751-18274355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 290

               
               
               Conread position:67-643
               
               
               Cow position:chr5:10855827-10855210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 291

               
               
               Conread position:69-378
               
               
               Cow position:chr5:54860929-54860613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:69-392
               
               
               Cow position:chr5:42505996-42506337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):65, 290

               
               
               Conread position:69-566
               
               
               Cow position:chr5:46808303-46808823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 255

               
               
               Conread position:69-598
               
               
               Cow position:chr5:40923648-40923123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 148

               
               
               Conread position:69-601
               
               
               Cow position:chr5:23229984-23230533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 183

               
               
               Conread position:69-601
               
               
               Cow position:chr5:35301090-35301653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 202

               
               
               Conread position:69-601
               
               
               Cow position:chr5:40789061-40789612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 64

               
               
               Conread position:69-601
               
               
               Cow position:chr5:58151789-58151250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:359
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:69-626
               
               
               Cow position:chr5:23686901-23686336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 183

               
               
               Conread position:69-630
               
               
               Cow position:chr5:69622599-69623180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:370
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):146, 74

               
               
               Conread position:69-631
               
               
               Cow position:chr5:23669137-23668545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 35

               
               
               Conread position:69-632
               
               
               Cow position:chr5:26078201-26077596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:69-642
               
               
               Cow position:chr5:988070-987460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 71

               
               
               Conread position:69-642
               
               
               Cow position:chr5:5104214-5104823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 288

               
               
               Conread position:69-642
               
               
               Cow position:chr5:10813759-10813142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr5:12731718-12731107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 288

               
               
               Conread position:69-642
               
               
               Cow position:chr5:59061628-59062244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 299

               
               
               Conread position:69-643
               
               
               Cow position:chr5:7143055-7142465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:69-644
               
               
               Cow position:chr5:4757185-4756575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 153

               
               
               Conread position:69-644
               
               
               Cow position:chr5:24099657-24100257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:70-502
               
               
               Cow position:chr5:53703207-53702782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):149, 42

               
               
               Conread position:70-573
               
               
               Cow position:chr5:18664776-18665292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 184

               
               
               Conread position:70-642
               
               
               Cow position:chr5:23959336-23958722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 234

               
               
               Conread position:72-564
               
               
               Cow position:chr5:24151774-24152286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 248

               
               
               Conread position:73-246
               
               
               Cow position:chr5:27197315-27197494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:73-280
               
               
               Cow position:chr5:46629183-46628966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 145

               
               
               Conread position:73-344
               
               
               Cow position:chr5:73488564-73488276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):65, 252

               
               
               Conread position:73-493
               
               
               Cow position:chr5:51308867-51308428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:73-497
               
               
               Cow position:chr5:27908273-27907827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 286

               
               
               Conread position:73-503
               
               
               Cow position:chr5:34287226-34286783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 221

               
               
               Conread position:73-505
               
               
               Cow position:chr5:32951897-32952346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 238

               
               
               Conread position:73-576
               
               
               Cow position:chr5:41960741-41960227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:73-601
               
               
               Cow position:chr5:2915445-2915989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:73-601
               
               
               Cow position:chr5:4018199-4017659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:73-601
               
               
               Cow position:chr5:7811257-7810695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:73-601
               
               
               Cow position:chr5:27003231-27003787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:73-601
               
               
               Cow position:chr5:29434722-29434208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 154

               
               
               Conread position:73-601
               
               
               Cow position:chr5:29767123-29767650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:73-601
               
               
               Cow position:chr5:47893549-47893013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 286

               
               
               Conread position:73-619
               
               
               Cow position:chr5:18885538-18884959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 563

               
               
               Conread position:73-619
               
               
               Cow position:chr5:31707558-31708136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-626
               
               
               Cow position:chr5:58197011-58197596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 286

               
               
               Conread position:73-642
               
               
               Cow position:chr5:3965442-3966053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 210

               
               
               Conread position:73-642
               
               
               Cow position:chr5:10842389-10841772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:73-642
               
               
               Cow position:chr5:46777389-46778001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:73-642
               
               
               Cow position:chr5:47830082-47829467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 285

               
               
               Conread position:73-644
               
               
               Cow position:chr5:32281769-32281200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:74-450
               
               
               Cow position:chr5:54791636-54791236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 285

               
               
               Conread position:74-504
               
               
               Cow position:chr5:53006618-53007054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 41

               
               
               Conread position:74-601
               
               
               Cow position:chr5:49757677-49757155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:77-586
               
               
               Cow position:chr5:55834774-55834273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:77-644
               
               
               Cow position:chr5:32773765-32774373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:78-602
               
               
               Cow position:chr5:21116752-21117307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:354
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:78-632
               
               
               Cow position:chr5:10775269-10774666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 290

               
               
               Conread position:84-608
               
               
               Cow position:chr5:4070226-4070778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 264

               
               
               Conread position:88-601
               
               
               Cow position:chr5:34952902-34953404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:317
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:89-584
               
               
               Cow position:chr5:52434750-52435273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 178

               
               
               Conread position:106-335
               
               
               Cow position:chr5:53624777-53624550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:109-309
               
               
               Cow position:chr5:41554300-41554085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:118-411
               
               
               Cow position:chr5:55653804-55653490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 168

               
               
               Conread position:118-608
               
               
               Cow position:chr5:48533029-48533518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:341
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):27, 148

               
               
               Conread position:119-601
               
               
               Cow position:chr5:11115709-11115219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 240

               
               
               Conread position:137-337
               
               
               Cow position:chr5:21145208-21145010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:142-603
               
               
               Cow position:chr5:53945912-53946385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 126

               
               
               Conread position:143-601
               
               
               Cow position:chr5:75624785-75625250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 75

               
               
               Conread position:157-325
               
               
               Cow position:chr5:40757556-40757723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:157-643
               
               
               Cow position:chr5:34190008-34190530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:157-644
               
               
               Cow position:chr5:6587492-6586980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 139

               
               
               Conread position:161-601
               
               
               Cow position:chr5:18549264-18549703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:161-642
               
               
               Cow position:chr5:13046753-13047246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 200

               
               
               Conread position:162-543
               
               
               Cow position:chr5:18114482-18114069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 224

               
               
               Conread position:163-557
               
               
               Cow position:chr5:42751576-42751981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:163-643
               
               
               Cow position:chr5:24295717-24296209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:165-408
               
               
               Cow position:chr5:49072551-49072316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:170-379
               
               
               Cow position:chr5:7677388-7677595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:170-598
               
               
               Cow position:chr5:35527047-35527477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:171-497
               
               
               Cow position:chr5:30051627-30051299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:171-642
               
               
               Cow position:chr5:54620157-54620647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:174-637
               
               
               Cow position:chr5:28014146-28014609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:176-584
               
               
               Cow position:chr5:28333365-28332950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:181-643
               
               
               Cow position:chr5:10919956-10920443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:182-602
               
               
               Cow position:chr5:32167006-32166587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:185-446
               
               
               Cow position:chr5:46646075-46646345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):40, 119

               
               
               Conread position:185-465
               
               
               Cow position:chr5:16917355-16917074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:193-603
               
               
               Cow position:chr5:26183996-26184414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:195-603
               
               
               Cow position:chr5:28242174-28242571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):194, 27

               
               
               Conread position:203-642
               
               
               Cow position:chr5:49223345-49222882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:216-642
               
               
               Cow position:chr5:3822123-3822540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:220-560
               
               
               Cow position:chr5:50947794-50948147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:225-642
               
               
               Cow position:chr5:4684637-4684197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 117

               
               
               Conread position:256-601
               
               
               Cow position:chr5:16102859-16102515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:256-601
               
               
               Cow position:chr5:73455455-73455789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:256-643
               
               
               Cow position:chr5:76096252-76096659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 86

               
               
               Conread position:256-644
               
               
               Cow position:chr5:27197807-27198216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:263-607
               
               
               Cow position:chr5:41956210-41955866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:264-549
               
               
               Cow position:chr5:2459188-2459485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 76

               
               
               Conread position:264-601
               
               
               Cow position:chr5:34201731-34201385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:273-570
               
               
               Cow position:chr5:49130461-49130756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):233, 66

               
               
               Conread position:274-601
               
               
               Cow position:chr5:46628165-46627844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 85

               
               
               Conread position:277-632
               
               
               Cow position:chr5:41376635-41376257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:280-469
               
               
               Cow position:chr5:23236138-23236331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:286-642
               
               
               Cow position:chr5:307185-306806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:303-642
               
               
               Cow position:chr5:40131358-40130994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:304-601
               
               
               Cow position:chr5:66495560-66495862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:310-643
               
               
               Cow position:chr5:23831069-23830719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:317-601
               
               
               Cow position:chr5:40758185-40758475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:319-514
               
               
               Cow position:chr5:7227121-7227310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:324-601
               
               
               Cow position:chr5:31122320-31122032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:328-622
               
               
               Cow position:chr5:51744552-51744850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:333-601
               
               
               Cow position:chr5:57816419-57816138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:335-601
               
               
               Cow position:chr5:2975066-2975345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:349-642
               
               
               Cow position:chr5:37378416-37378734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:351-601
               
               
               Cow position:chr5:14658159-14657897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:366-601
               
               
               Cow position:chr5:5666277-5666036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:368-601
               
               
               Cow position:chr5:43988412-43988653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:388-643
               
               
               Cow position:chr5:12681719-12681447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:389-601
               
               
               Cow position:chr5:20108234-20108457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:396-643
               
               
               Cow position:chr5:34697990-34698259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:399-602
               
               
               Cow position:chr5:20310853-20310641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 178

               
               
               Conread position:419-601
               
               
               Cow position:chr5:41928862-41928672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:419-638
               
               
               Cow position:chr5:57000909-57001123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:420-601
               
               
               Cow position:chr5:12642068-12641878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:427-642
               
               
               Cow position:chr5:54860600-54860381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:428-602
               
               
               Cow position:chr5:46646350-46646532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:433-601
               
               
               Cow position:chr5:3424739-3424916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:441-642
               
               
               Cow position:chr5:58191374-58191153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:5-601
               
               
               Cow position:chr6:7140284-7139648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 290

               
               
               Conread position:5-643
               
               
               Cow position:chr6:51715591-51716278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:6-601
               
               
               Cow position:chr6:35419212-35418617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:7-601
               
               
               Cow position:chr6:10609946-10610535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 56

               
               
               Conread position:7-601
               
               
               Cow position:chr6:34891063-34890435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 352

               
               
               Conread position:7-642
               
               
               Cow position:chr6:17597245-17596550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:7-642
               
               
               Cow position:chr6:28187756-28187093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 355

               
               
               Conread position:8-638
               
               
               Cow position:chr6:28104797-28104123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:8-643
               
               
               Cow position:chr6:28169962-28170654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 296

               
               
               Conread position:12-309
               
               
               Cow position:chr6:13316405-13316077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:12-608
               
               
               Cow position:chr6:47042147-47041505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 358

               
               
               Conread position:16-337
               
               
               Cow position:chr6:14761843-14761509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:16-525
               
               
               Cow position:chr6:7834592-7835102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:16-601
               
               
               Cow position:chr6:66232878-66233492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 112

               
               
               Conread position:16-603
               
               
               Cow position:chr6:10644805-10645414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 189

               
               
               Conread position:16-603
               
               
               Cow position:chr6:58601553-58602174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 351

               
               
               Conread position:16-642
               
               
               Cow position:chr6:58065807-58066461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 261

               
               
               Conread position:16-643
               
               
               Cow position:chr6:35875642-35874968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 312

               
               
               Conread position:16-643
               
               
               Cow position:chr6:40316655-40317336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 304

               
               
               Conread position:17-278
               
               
               Cow position:chr6:8203256-8203525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 180

               
               
               Conread position:17-287
               
               
               Cow position:chr6:15278743-15278449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:17-380
               
               
               Cow position:chr6:64717096-64717480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 346

               
               
               Conread position:17-384
               
               
               Cow position:chr6:58027745-58028136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):43, 231

               
               
               Conread position:17-387
               
               
               Cow position:chr6:41190389-41190759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 141

               
               
               Conread position:17-411
               
               
               Cow position:chr6:3276301-3275875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 340

               
               
               Conread position:17-601
               
               
               Cow position:chr6:15140106-15139481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-601
               
               
               Cow position:chr6:20560032-20559429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 278

               
               
               Conread position:17-643
               
               
               Cow position:chr6:50536-49860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 354

               
               
               Conread position:17-643
               
               
               Cow position:chr6:5948712-5948033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 311

               
               
               Conread position:17-643
               
               
               Cow position:chr6:8760224-8759547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 347

               
               
               Conread position:17-643
               
               
               Cow position:chr6:21973741-21974415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:17-643
               
               
               Cow position:chr6:39333798-39333124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 363

               
               
               Conread position:17-643
               
               
               Cow position:chr6:40553503-40552836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 249

               
               
               Conread position:17-643
               
               
               Cow position:chr6:40866253-40865581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-643
               
               
               Cow position:chr6:55542193-55541514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:17-644
               
               
               Cow position:chr6:703288-703957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 352

               
               
               Conread position:18-601
               
               
               Cow position:chr6:48579916-48579320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 162

               
               
               Conread position:18-601
               
               
               Cow position:chr6:51731162-51731773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:19-450
               
               
               Cow position:chr6:51087014-51087472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:19-504
               
               
               Cow position:chr6:28133990-28134497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 114

               
               
               Conread position:20-642
               
               
               Cow position:chr6:28490489-28489825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 307

               
               
               Conread position:24-268
               
               
               Cow position:chr6:41236-40973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 39

               
               
               Conread position:25-601
               
               
               Cow position:chr6:66745087-66745685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:25-601
               
               
               Cow position:chr6:67264978-67265576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:54-425
               
               
               Cow position:chr6:207380-207753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:60-643
               
               
               Cow position:chr6:3487307-3486679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 296

               
               
               Conread position:64-601
               
               
               Cow position:chr6:1382193-1381648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:65-643
               
               
               Cow position:chr6:11724047-11723453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:67-603
               
               
               Cow position:chr6:66546617-66547167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 211

               
               
               Conread position:67-642
               
               
               Cow position:chr6:12665188-12664575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:69-238
               
               
               Cow position:chr6:2577072-2577256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-312
               
               
               Cow position:chr6:9264220-9264483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-321
               
               
               Cow position:chr6:46573909-46574181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-358
               
               
               Cow position:chr6:3784899-3785207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-404
               
               
               Cow position:chr6:50646052-50645695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-434
               
               
               Cow position:chr6:46603114-46602727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 290

               
               
               Conread position:69-601
               
               
               Cow position:chr6:2375819-2376367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 287

               
               
               Conread position:69-601
               
               
               Cow position:chr6:40326547-40327111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:69-603
               
               
               Cow position:chr6:39910466-39911026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 299

               
               
               Conread position:69-608
               
               
               Cow position:chr6:65897839-65897249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 273

               
               
               Conread position:69-637
               
               
               Cow position:chr6:44149425-44148810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:69-642
               
               
               Cow position:chr6:330333-329720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:69-642
               
               
               Cow position:chr6:27170711-27171325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 291

               
               
               Conread position:69-642
               
               
               Cow position:chr6:40276218-40276828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:69-642
               
               
               Cow position:chr6:40379502-40378886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr6:45587080-45587693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-643
               
               
               Cow position:chr6:30273764-30273148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 292

               
               
               Conread position:69-643
               
               
               Cow position:chr6:41228576-41229189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 187

               
               
               Conread position:69-644
               
               
               Cow position:chr6:10339484-10338900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:70-601
               
               
               Cow position:chr6:2877554-2876992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:70-608
               
               
               Cow position:chr6:65820840-65820271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 294

               
               
               Conread position:71-415
               
               
               Cow position:chr6:25360178-25360533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 155

               
               
               Conread position:71-644
               
               
               Cow position:chr6:6157890-6158447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 67

               
               
               Conread position:72-514
               
               
               Cow position:chr6:20648942-20648497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:73-242
               
               
               Cow position:chr6:28276145-28276325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:73-281
               
               
               Cow position:chr6:60931822-60932049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:73-338
               
               
               Cow position:chr6:29312637-29312924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:73-387
               
               
               Cow position:chr6:27471715-27472040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 279

               
               
               Conread position:73-394
               
               
               Cow position:chr6:11273766-11273439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 58

               
               
               Conread position:73-407
               
               
               Cow position:chr6:66193377-66193037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:73-504
               
               
               Cow position:chr6:13105196-13105623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:73-504
               
               
               Cow position:chr6:13945045-13945501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:73-504
               
               
               Cow position:chr6:16053243-16053698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 305

               
               
               Conread position:73-557
               
               
               Cow position:chr6:11871510-11871006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 107

               
               
               Conread position:73-599
               
               
               Cow position:chr6:15926431-15925871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:365
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:73-601
               
               
               Cow position:chr6:7178153-7177601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:73-601
               
               
               Cow position:chr6:10250470-10249915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 273

               
               
               Conread position:73-601
               
               
               Cow position:chr6:15478310-15478863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 140

               
               
               Conread position:73-601
               
               
               Cow position:chr6:32072581-32072086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:346
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:73-601
               
               
               Cow position:chr6:39955001-39955539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:73-601
               
               
               Cow position:chr6:52694157-52694718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 288

               
               
               Conread position:73-642
               
               
               Cow position:chr6:3150399-3150981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 55

               
               
               Conread position:73-642
               
               
               Cow position:chr6:43618857-43619469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:73-643
               
               
               Cow position:chr6:1535440-1534837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 276

               
               
               Conread position:73-643
               
               
               Cow position:chr6:1821477-1820883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 109

               
               
               Conread position:73-643
               
               
               Cow position:chr6:3888370-3887771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 181

               
               
               Conread position:73-643
               
               
               Cow position:chr6:25792622-25792012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:73-643
               
               
               Cow position:chr6:43792436-43791837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 289

               
               
               Conread position:73-643
               
               
               Cow position:chr6:65842751-65843361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 17

               
               
               Conread position:73-644
               
               
               Cow position:chr6:13310221-13309642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:73-645
               
               
               Cow position:chr6:59617246-59617839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 242

               
               
               Conread position:75-643
               
               
               Cow position:chr6:27528860-27528274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 161

               
               
               Conread position:77-317
               
               
               Cow position:chr6:65915453-65915701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:77-504
               
               
               Cow position:chr6:27333136-27333576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:77-642
               
               
               Cow position:chr6:26669725-26669117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 285

               
               
               Conread position:77-643
               
               
               Cow position:chr6:914773-915377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 279

               
               
               Conread position:84-601
               
               
               Cow position:chr6:47048037-47047488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 275

               
               
               Conread position:84-632
               
               
               Cow position:chr6:44262323-44261745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 179

               
               
               Conread position:87-350
               
               
               Cow position:chr6:34196527-34196807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 270

               
               
               Conread position:90-601
               
               
               Cow position:chr6:9843072-9843600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 253

               
               
               Conread position:92-601
               
               
               Cow position:chr6:21836019-21835506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 145

               
               
               Conread position:96-507
               
               
               Cow position:chr6:33899090-33898686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:107-644
               
               
               Cow position:chr6:3571768-3572340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:111-601
               
               
               Cow position:chr6:28703540-28703017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 252

               
               
               Conread position:117-443
               
               
               Cow position:chr6:28766863-28766512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 242

               
               
               Conread position:122-498
               
               
               Cow position:chr6:68028123-68028508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:136-599
               
               
               Cow position:chr6:42441591-42442062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:140-601
               
               
               Cow position:chr6:63465711-63465243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 6

               
               
               Conread position:140-643
               
               
               Cow position:chr6:12626920-12627444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:142-563
               
               
               Cow position:chr6:47625278-47625716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:145-643
               
               
               Cow position:chr6:476754-477285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 206

               
               
               Conread position:155-601
               
               
               Cow position:chr6:15891965-15891511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 192

               
               
               Conread position:157-422
               
               
               Cow position:chr6:1404087-1403813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 189

               
               
               Conread position:157-642
               
               
               Cow position:chr6:1410153-1409637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 192

               
               
               Conread position:158-642
               
               
               Cow position:chr6:44001905-44002417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:158-643
               
               
               Cow position:chr6:16591207-16591702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:161-345
               
               
               Cow position:chr6:64790563-64790754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:162-642
               
               
               Cow position:chr6:13848316-13848812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 30

               
               
               Conread position:163-601
               
               
               Cow position:chr6:60375331-60374893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:171-601
               
               
               Cow position:chr6:25215463-25215907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:174-601
               
               
               Cow position:chr6:64954032-64953611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:179-601
               
               
               Cow position:chr6:33108192-33107769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):152, 62

               
               
               Conread position:179-643
               
               
               Cow position:chr6:8203443-8203940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:187-603
               
               
               Cow position:chr6:10679700-10680106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 57

               
               
               Conread position:188-603
               
               
               Cow position:chr6:50636133-50636565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:199-504
               
               
               Cow position:chr6:49523463-49523775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:202-513
               
               
               Cow position:chr6:41021-40704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:216-385
               
               
               Cow position:chr6:16995693-16995861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:216-501
               
               
               Cow position:chr6:15966509-15966234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:224-601
               
               
               Cow position:chr6:5749226-5749617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 120

               
               
               Conread position:225-581
               
               
               Cow position:chr6:58461016-58460649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:238-392
               
               
               Cow position:chr6:24262617-24262771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 103

               
               
               Conread position:241-643
               
               
               Cow position:chr6:24240729-24241150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 10

               
               
               Conread position:245-643
               
               
               Cow position:chr6:184216-183797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 29

               
               
               Conread position:246-569
               
               
               Cow position:chr6:7159945-7160276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 93

               
               
               Conread position:251-601
               
               
               Cow position:chr6:31199171-31199537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:259-549
               
               
               Cow position:chr6:2577312-2577602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 36

               
               
               Conread position:259-642
               
               
               Cow position:chr6:16598959-16599364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 59

               
               
               Conread position:260-645
               
               
               Cow position:chr6:32416887-32417271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 67

               
               
               Conread position:266-643
               
               
               Cow position:chr6:36528558-36528943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:275-603
               
               
               Cow position:chr6:38206660-38206979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:279-603
               
               
               Cow position:chr6:38272928-38273263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 59

               
               
               Conread position:295-644
               
               
               Cow position:chr6:39374689-39375034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:309-603
               
               
               Cow position:chr6:65907399-65907094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:313-601
               
               
               Cow position:chr6:17243907-17243609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:323-602
               
               
               Cow position:chr6:27375519-27375229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:328-601
               
               
               Cow position:chr6:59594333-59594595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:328-641
               
               
               Cow position:chr6:64717726-64718065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:331-643
               
               
               Cow position:chr6:58028136-58028465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:332-601
               
               
               Cow position:chr6:69143981-69144261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:333-644
               
               
               Cow position:chr6:238434-238108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:339-601
               
               
               Cow position:chr6:57471087-57471360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:342-643
               
               
               Cow position:chr6:18973039-18972724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:346-642
               
               
               Cow position:chr6:14390356-14390674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:388-601
               
               
               Cow position:chr6:34196815-34197023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:390-507
               
               
               Cow position:chr6:14080771-14080892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:391-643
               
               
               Cow position:chr6:11269963-11269701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:396-601
               
               
               Cow position:chr6:26777689-26777477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:396-614
               
               
               Cow position:chr6:27473907-27474135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:397-643
               
               
               Cow position:chr6:18985569-18985821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:412-643
               
               
               Cow position:chr6:50111313-50111563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:426-564
               
               
               Cow position:chr6:3275633-3275488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:426-645
               
               
               Cow position:chr6:17047851-17048087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):80, 225

               
               
               Conread position:449-601
               
               
               Cow position:chr6:34136605-34136446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:459-580
               
               
               Cow position:chr6:12380775-12380903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:476-642
               
               
               Cow position:chr6:28642978-28642793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:2-642
               
               
               Cow position:chr7:20514634-20513952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:5-504
               
               
               Cow position:chr7:3300018-3299489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 362

               
               
               Conread position:7-392
               
               
               Cow position:chr7:66036326-66036731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):69, 355

               
               
               Conread position:7-487
               
               
               Cow position:chr7:48635587-48636073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 299

               
               
               Conread position:7-628
               
               
               Cow position:chr7:14214214-14213566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 302

               
               
               Conread position:7-642
               
               
               Cow position:chr7:20798290-20797617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 256

               
               
               Conread position:9-455
               
               
               Cow position:chr7:24878728-24878256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 355

               
               
               Conread position:9-601
               
               
               Cow position:chr7:67489866-67490467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 39

               
               
               Conread position:12-373
               
               
               Cow position:chr7:19990173-19990557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 253

               
               
               Conread position:16-377
               
               
               Cow position:chr7:65337637-65337277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:16-433
               
               
               Cow position:chr7:1452807-1453251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 351

               
               
               Conread position:16-564
               
               
               Cow position:chr7:63949884-63949333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:374
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 106

               
               
               Conread position:16-601
               
               
               Cow position:chr7:42871304-42871925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 307

               
               
               Conread position:16-601
               
               
               Cow position:chr7:58994745-58995344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 238

               
               
               Conread position:16-601
               
               
               Cow position:chr7:59680014-59680630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:16-612
               
               
               Cow position:chr7:21126501-21125885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 293

               
               
               Conread position:16-637
               
               
               Cow position:chr7:51015422-51016071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:16-642
               
               
               Cow position:chr7:1609475-1608801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 348

               
               
               Conread position:16-643
               
               
               Cow position:chr7:21233847-21233174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 352

               
               
               Conread position:16-643
               
               
               Cow position:chr7:67799984-67800660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:17-436
               
               
               Cow position:chr7:66905884-66906338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 352

               
               
               Conread position:17-504
               
               
               Cow position:chr7:1371482-1370967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 233

               
               
               Conread position:17-601
               
               
               Cow position:chr7:24807312-24806702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 171

               
               
               Conread position:17-643
               
               
               Cow position:chr7:526137-526782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:17-643
               
               
               Cow position:chr7:5308952-5308271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 305

               
               
               Conread position:17-643
               
               
               Cow position:chr7:10430261-10429589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 365

               
               
               Conread position:17-643
               
               
               Cow position:chr7:14138433-14137758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 215

               
               
               Conread position:17-643
               
               
               Cow position:chr7:21986588-21987240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 209

               
               
               Conread position:17-643
               
               
               Cow position:chr7:55536764-55536089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 346

               
               
               Conread position:18-362
               
               
               Cow position:chr7:57211326-57211685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 22

               
               
               Conread position:18-415
               
               
               Cow position:chr7:40268804-40268397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:18-601
               
               
               Cow position:chr7:33332722-33333346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 369

               
               
               Conread position:19-375
               
               
               Cow position:chr7:13575462-13575840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:22-421
               
               
               Cow position:chr7:26460464-26460899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 260

               
               
               Conread position:24-579
               
               
               Cow position:chr7:29368851-29368281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:24-601
               
               
               Cow position:chr7:21311623-21312226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 359

               
               
               Conread position:27-614
               
               
               Cow position:chr7:67495277-67495896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:42-338
               
               
               Cow position:chr7:39554292-39553989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:64-588
               
               
               Cow position:chr7:68439277-68439794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:367
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:65-408
               
               
               Cow position:chr7:20533168-20533520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 196

               
               
               Conread position:67-602
               
               
               Cow position:chr7:20211848-20211310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:364
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:67-642
               
               
               Cow position:chr7:6630080-6629466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 217

               
               
               Conread position:68-471
               
               
               Cow position:chr7:26852675-26853082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 179

               
               
               Conread position:68-601
               
               
               Cow position:chr7:49829106-49828553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 246

               
               
               Conread position:68-608
               
               
               Cow position:chr7:21852601-21852065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:364
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 170

               
               
               Conread position:69-353
               
               
               Cow position:chr7:34546584-34546878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 233

               
               
               Conread position:69-601
               
               
               Cow position:chr7:20824547-20825087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:369
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):17, 228

               
               
               Conread position:69-632
               
               
               Cow position:chr7:20060706-20061311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr7:33311727-33311112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 296

               
               
               Conread position:69-642
               
               
               Cow position:chr7:62445924-62445316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 181

               
               
               Conread position:69-642
               
               
               Cow position:chr7:64350708-64351323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 314

               
               
               Conread position:69-642
               
               
               Cow position:chr7:65812044-65812659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:69-643
               
               
               Cow position:chr7:6721369-6721976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:69-644
               
               
               Cow position:chr7:54649119-54649736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:70-375
               
               
               Cow position:chr7:40320417-40320722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:73-250
               
               
               Cow position:chr7:3124693-3124891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:73-268
               
               
               Cow position:chr7:46900844-46900629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:73-307
               
               
               Cow position:chr7:24058675-24058914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 95

               
               
               Conread position:73-489
               
               
               Cow position:chr7:43871727-43872159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 270

               
               
               Conread position:73-504
               
               
               Cow position:chr7:6647438-6646992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 214

               
               
               Conread position:73-505
               
               
               Cow position:chr7:25136086-25136527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 67

               
               
               Conread position:73-514
               
               
               Cow position:chr7:57563871-57563415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:73-601
               
               
               Cow position:chr7:546071-546619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 241

               
               
               Conread position:73-601
               
               
               Cow position:chr7:25440728-25441281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 285

               
               
               Conread position:73-601
               
               
               Cow position:chr7:38398043-38398600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 285

               
               
               Conread position:73-601
               
               
               Cow position:chr7:55041263-55040703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-602
               
               
               Cow position:chr7:3156695-3157257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 242

               
               
               Conread position:73-631
               
               
               Cow position:chr7:48805214-48804612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 306

               
               
               Conread position:73-636
               
               
               Cow position:chr7:57084173-57084748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:378
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:73-642
               
               
               Cow position:chr7:26830744-26830167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:382
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):42, 201

               
               
               Conread position:73-642
               
               
               Cow position:chr7:52763508-52764121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-643
               
               
               Cow position:chr7:13532679-13532072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 175

               
               
               Conread position:73-643
               
               
               Cow position:chr7:27101063-27100454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 204

               
               
               Conread position:73-643
               
               
               Cow position:chr7:27788177-27788791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:73-643
               
               
               Cow position:chr7:45947912-45947316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 168

               
               
               Conread position:73-643
               
               
               Cow position:chr7:64239777-64239156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 294

               
               
               Conread position:74-642
               
               
               Cow position:chr7:7259755-7260354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 278

               
               
               Conread position:74-643
               
               
               Cow position:chr7:34487142-34487749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:75-375
               
               
               Cow position:chr7:5663794-5664110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:75-643
               
               
               Cow position:chr7:61578735-61579336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 240

               
               
               Conread position:76-566
               
               
               Cow position:chr7:995987-996486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:76-643
               
               
               Cow position:chr7:67429804-67430392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:77-311
               
               
               Cow position:chr7:11447795-11448051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:77-601
               
               
               Cow position:chr7:53407828-53408352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:365
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:77-601
               
               
               Cow position:chr7:63386965-63387516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 264

               
               
               Conread position:77-642
               
               
               Cow position:chr7:20774103-20773508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 241

               
               
               Conread position:78-387
               
               
               Cow position:chr7:541732-541422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:78-588
               
               
               Cow position:chr7:59875691-59876205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:352
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):91, 197

               
               
               Conread position:78-602
               
               
               Cow position:chr7:45915603-45916120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:352
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:80-596
               
               
               Cow position:chr7:59138878-59139389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:84-643
               
               
               Cow position:chr7:445027-444423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 280

               
               
               Conread position:88-600
               
               
               Cow position:chr7:67813744-67814256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 226

               
               
               Conread position:88-601
               
               
               Cow position:chr7:5261676-5261139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 289

               
               
               Conread position:88-601
               
               
               Cow position:chr7:18445508-18444974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 116

               
               
               Conread position:89-643
               
               
               Cow position:chr7:8143743-8143141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 276

               
               
               Conread position:90-585
               
               
               Cow position:chr7:67676335-67676838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:90-601
               
               
               Cow position:chr7:29471713-29472240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 226

               
               
               Conread position:97-595
               
               
               Cow position:chr7:24934297-24933780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:104-504
               
               
               Cow position:chr7:58376630-58376231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:107-643
               
               
               Cow position:chr7:39097280-39096707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:118-549
               
               
               Cow position:chr7:1403204-1402761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:118-601
               
               
               Cow position:chr7:66573709-66573224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:124-630
               
               
               Cow position:chr7:40006632-40006120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:352
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:130-550
               
               
               Cow position:chr7:1012204-1011779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:132-575
               
               
               Cow position:chr7:25094109-25093664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:134-377
               
               
               Cow position:chr7:59029724-59029976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:134-405
               
               
               Cow position:chr7:4093929-4093653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:134-475
               
               
               Cow position:chr7:45652083-45652412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:142-530
               
               
               Cow position:chr7:27128768-27129164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:142-599
               
               
               Cow position:chr7:59685111-59685594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:142-601
               
               
               Cow position:chr7:33405091-33404602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 212

               
               
               Conread position:144-643
               
               
               Cow position:chr7:39793168-39793692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 210

               
               
               Conread position:157-465
               
               
               Cow position:chr7:60856734-60856423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:157-601
               
               
               Cow position:chr7:20557063-20557526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:161-332
               
               
               Cow position:chr7:34417154-34416977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:162-599
               
               
               Cow position:chr7:47974972-47974514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:162-601
               
               
               Cow position:chr7:31095942-31095481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 187

               
               
               Conread position:162-609
               
               
               Cow position:chr7:6816-7281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):63, 49

               
               
               Conread position:163-315
               
               
               Cow position:chr7:49730532-49730689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:163-338
               
               
               Cow position:chr7:65452725-65452909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:163-602
               
               
               Cow position:chr7:28567675-28568119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 180

               
               
               Conread position:167-583
               
               
               Cow position:chr7:66228346-66228774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 177

               
               
               Conread position:167-601
               
               
               Cow position:chr7:34221498-34221065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:171-617
               
               
               Cow position:chr7:54581190-54581651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:177-603
               
               
               Cow position:chr7:21313255-21313695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:188-601
               
               
               Cow position:chr7:58337681-58337264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:193-643
               
               
               Cow position:chr7:65872244-65871781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:216-601
               
               
               Cow position:chr7:14522-14128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:216-644
               
               
               Cow position:chr7:39132863-39133327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:217-643
               
               
               Cow position:chr7:46747362-46747826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:217-643
               
               
               Cow position:chr7:61809393-61809844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:239-580
               
               
               Cow position:chr7:25433791-25434135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:240-601
               
               
               Cow position:chr7:33760430-33760788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:241-642
               
               
               Cow position:chr7:6627991-6627570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 10

               
               
               Conread position:241-642
               
               
               Cow position:chr7:11462727-11462303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 10

               
               
               Conread position:243-544
               
               
               Cow position:chr7:1247358-1247654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):142, 28

               
               
               Conread position:245-599
               
               
               Cow position:chr7:43396998-43396632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 29

               
               
               Conread position:253-643
               
               
               Cow position:chr7:3126112-3126524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 86

               
               
               Conread position:256-642
               
               
               Cow position:chr7:23250046-23250456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:259-601
               
               
               Cow position:chr7:19046021-19045664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:259-642
               
               
               Cow position:chr7:66070697-66070294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 83

               
               
               Conread position:266-564
               
               
               Cow position:chr7:5249035-5248734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:281-601
               
               
               Cow position:chr7:20369445-20369114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:287-601
               
               
               Cow position:chr7:30118027-30117705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):106, 53

               
               
               Conread position:308-643
               
               
               Cow position:chr7:33070932-33070576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:309-614
               
               
               Cow position:chr7:49730959-49731271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:314-599
               
               
               Cow position:chr7:68896140-68896433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:315-601
               
               
               Cow position:chr7:42305345-42305075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:319-644
               
               
               Cow position:chr7:34416858-34416512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:328-642
               
               
               Cow position:chr7:37021542-37021885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:340-642
               
               
               Cow position:chr7:8336872-8337198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:349-632
               
               
               Cow position:chr7:33785782-33786089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:351-601
               
               
               Cow position:chr7:40320811-40321045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:352-601
               
               
               Cow position:chr7:19266394-19266136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:352-643
               
               
               Cow position:chr7:60728933-60728621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:358-642
               
               
               Cow position:chr7:2966051-2966327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:363-538
               
               
               Cow position:chr7:28664231-28664048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:396-643
               
               
               Cow position:chr7:54642075-54641813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:399-601
               
               
               Cow position:chr7:45952208-45952417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:420-644
               
               
               Cow position:chr7:66906838-66907083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:422-642
               
               
               Cow position:chr7:949137-949379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:426-601
               
               
               Cow position:chr7:27711032-27711214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:428-643
               
               
               Cow position:chr7:3121600-3121832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:428-643
               
               
               Cow position:chr7:40201555-40201789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:429-601
               
               
               Cow position:chr7:33067123-33066944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:429-601
               
               
               Cow position:chr7:51920772-51920948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 126

               
               
               Conread position:432-601
               
               
               Cow position:chr7:34736790-34736962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:440-643
               
               
               Cow position:chr7:34150555-34150775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 199

               
               
               Conread position:449-643
               
               
               Cow position:chr7:541405-541199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:459-642
               
               
               Cow position:chr7:37010335-37010133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:470-643
               
               
               Cow position:chr7:48636001-48636168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 114

               
               
               Conread position:1-585
               
               
               Cow position:chr8:21230410-21231039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 297

               
               
               Conread position:1-609
               
               
               Cow position:chr8:58185254-58184638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:2-603
               
               
               Cow position:chr8:32630697-32630062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 363

               
               
               Conread position:5-599
               
               
               Cow position:chr8:21157455-21156824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 380

               
               
               Conread position:7-601
               
               
               Cow position:chr8:30487042-30486442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 261

               
               
               Conread position:7-601
               
               
               Cow position:chr8:54017211-54016582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 133

               
               
               Conread position:7-643
               
               
               Cow position:chr8:60061742-60062431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:12-182
               
               
               Cow position:chr8:50287584-50287401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:12-504
               
               
               Cow position:chr8:8911823-8912346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:12-571
               
               
               Cow position:chr8:45691666-45691083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 252

               
               
               Conread position:16-293
               
               
               Cow position:chr8:49859417-49859118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:16-375
               
               
               Cow position:chr8:40892108-40891755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):152, 23

               
               
               Conread position:16-381
               
               
               Cow position:chr8:15409145-15409522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):116, 244

               
               
               Conread position:16-464
               
               
               Cow position:chr8:51857353-51857792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:16-489
               
               
               Cow position:chr8:42579235-42578739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:16-543
               
               
               Cow position:chr8:42419079-42418548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:16-557
               
               
               Cow position:chr8:19051796-19052377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 351

               
               
               Conread position:16-564
               
               
               Cow position:chr8:47075508-47076085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:16-601
               
               
               Cow position:chr8:1347906-1347281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:16-601
               
               
               Cow position:chr8:11775969-11776587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:400
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:16-601
               
               
               Cow position:chr8:50960254-50959644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:16-637
               
               
               Cow position:chr8:42656639-42655983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:16-643
               
               
               Cow position:chr8:47674198-47674858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 245

               
               
               Conread position:17-236
               
               
               Cow position:chr8:25409077-25409319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 239

               
               
               Conread position:17-249
               
               
               Cow position:chr8:19331062-19331319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 204

               
               
               Conread position:17-387
               
               
               Cow position:chr8:46051531-46051927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 369

               
               
               Conread position:17-599
               
               
               Cow position:chr8:46218390-46217788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 60

               
               
               Conread position:17-601
               
               
               Cow position:chr8:5017529-5018147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 309

               
               
               Conread position:17-601
               
               
               Cow position:chr8:7162246-7162866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 347

               
               
               Conread position:17-601
               
               
               Cow position:chr8:33589727-33590352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 255

               
               
               Conread position:17-601
               
               
               Cow position:chr8:47660970-47660352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:17-643
               
               
               Cow position:chr8:4687752-4688423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 344

               
               
               Conread position:17-643
               
               
               Cow position:chr8:8400764-8400081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:17-643
               
               
               Cow position:chr8:14927531-14926861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 281

               
               
               Conread position:17-643
               
               
               Cow position:chr8:23771990-23772655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 307

               
               
               Conread position:17-643
               
               
               Cow position:chr8:25523751-25524414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 260

               
               
               Conread position:17-643
               
               
               Cow position:chr8:29007986-29008637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:17-643
               
               
               Cow position:chr8:47887231-47887866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:17-644
               
               
               Cow position:chr8:10742319-10741624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 372

               
               
               Conread position:17-644
               
               
               Cow position:chr8:32318203-32317532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 348

               
               
               Conread position:18-263
               
               
               Cow position:chr8:49216082-49216345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:18-329
               
               
               Cow position:chr8:12801765-12802097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:18-566
               
               
               Cow position:chr8:32041407-32040828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 360

               
               
               Conread position:18-598
               
               
               Cow position:chr8:11803175-11803777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 229

               
               
               Conread position:18-601
               
               
               Cow position:chr8:42158637-42158053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:19-504
               
               
               Cow position:chr8:51666466-51665948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 274

               
               
               Conread position:19-643
               
               
               Cow position:chr8:36635156-36634483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 342

               
               
               Conread position:20-239
               
               
               Cow position:chr8:1117871-1118112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:20-489
               
               
               Cow position:chr8:31984479-31984984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:347
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:24-601
               
               
               Cow position:chr8:30496200-30495624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 162

               
               
               Conread position:25-593
               
               
               Cow position:chr8:7399721-7399156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:381
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:41-301
               
               
               Cow position:chr8:38605824-38605554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:67-382
               
               
               Cow position:chr8:27579803-27580136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 292

               
               
               Conread position:67-601
               
               
               Cow position:chr8:12542492-12541946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 65

               
               
               Conread position:67-625
               
               
               Cow position:chr8:53427902-53428480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:67-643
               
               
               Cow position:chr8:2169115-2168499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 290

               
               
               Conread position:67-643
               
               
               Cow position:chr8:3786045-3786652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 169

               
               
               Conread position:69-311
               
               
               Cow position:chr8:6064377-6064115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-315
               
               
               Cow position:chr8:42816842-42816604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:69-434
               
               
               Cow position:chr8:47454189-47453806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 190

               
               
               Conread position:69-468
               
               
               Cow position:chr8:37654453-37654029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 290

               
               
               Conread position:69-594
               
               
               Cow position:chr8:2235573-2235023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 292

               
               
               Conread position:69-601
               
               
               Cow position:chr8:37932501-37933065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 293

               
               
               Conread position:69-601
               
               
               Cow position:chr8:41644263-41643717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:69-603
               
               
               Cow position:chr8:1152892-1152297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:69-642
               
               
               Cow position:chr8:33325457-33326073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 218

               
               
               Conread position:69-642
               
               
               Cow position:chr8:34349081-34349693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 285

               
               
               Conread position:69-642
               
               
               Cow position:chr8:37656150-37655533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 290

               
               
               Conread position:69-644
               
               
               Cow position:chr8:22570899-22570282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:72-357
               
               
               Cow position:chr8:12088243-12088542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 265

               
               
               Conread position:73-320
               
               
               Cow position:chr8:22128986-22129250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:73-328
               
               
               Cow position:chr8:44108129-44108394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 189

               
               
               Conread position:73-423
               
               
               Cow position:chr8:49697576-49697212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:73-466
               
               
               Cow position:chr8:28878427-28878837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 282

               
               
               Conread position:73-552
               
               
               Cow position:chr8:14631256-14630743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:73-557
               
               
               Cow position:chr8:4305477-4305965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:73-563
               
               
               Cow position:chr8:23135196-23134670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 238

               
               
               Conread position:73-599
               
               
               Cow position:chr8:9539276-9538747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:73-600
               
               
               Cow position:chr8:32436671-32436111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 307

               
               
               Conread position:73-601
               
               
               Cow position:chr8:11525133-11525659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 200

               
               
               Conread position:73-601
               
               
               Cow position:chr8:25377396-25377946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 298

               
               
               Conread position:73-601
               
               
               Cow position:chr8:34109290-34109847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:73-601
               
               
               Cow position:chr8:39194804-39194243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 286

               
               
               Conread position:73-602
               
               
               Cow position:chr8:11824325-11824865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:73-606
               
               
               Cow position:chr8:42485330-42485884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 208

               
               
               Conread position:73-612
               
               
               Cow position:chr8:56883936-56884506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:73-642
               
               
               Cow position:chr8:1320453-1321039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:73-643
               
               
               Cow position:chr8:2887163-2887774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:73-643
               
               
               Cow position:chr8:3855612-3855002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 283

               
               
               Conread position:73-643
               
               
               Cow position:chr8:21204997-21205561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:73-643
               
               
               Cow position:chr8:50929702-50929083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 312

               
               
               Conread position:73-643
               
               
               Cow position:chr8:59261514-59260926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 78

               
               
               Conread position:73-644
               
               
               Cow position:chr8:8517187-8516576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 245

               
               
               Conread position:74-601
               
               
               Cow position:chr8:9061571-9062120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:75-504
               
               
               Cow position:chr8:9964056-9963654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 12

               
               
               Conread position:76-474
               
               
               Cow position:chr8:31251918-31252324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 43

               
               
               Conread position:76-571
               
               
               Cow position:chr8:47783396-47782881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 37

               
               
               Conread position:76-601
               
               
               Cow position:chr8:76178-75634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:363
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):71, 245

               
               
               Conread position:77-329
               
               
               Cow position:chr8:30977822-30978072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:77-563
               
               
               Cow position:chr8:9736660-9737177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 304

               
               
               Conread position:77-632
               
               
               Cow position:chr8:45145890-45145293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 226

               
               
               Conread position:77-644
               
               
               Cow position:chr8:10749776-10750369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 174

               
               
               Conread position:77-644
               
               
               Cow position:chr8:42747367-42746782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:392
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:86-564
               
               
               Cow position:chr8:55085961-55086459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:87-642
               
               
               Cow position:chr8:14256503-14257102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 275

               
               
               Conread position:102-601
               
               
               Cow position:chr8:47068363-47067847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 206

               
               
               Conread position:104-643
               
               
               Cow position:chr8:6764847-6764286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 262

               
               
               Conread position:111-601
               
               
               Cow position:chr8:48787835-48788321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):115, 7

               
               
               Conread position:118-601
               
               
               Cow position:chr8:14255648-14256152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:123-622
               
               
               Cow position:chr8:6726518-6726000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 232

               
               
               Conread position:129-600
               
               
               Cow position:chr8:11565239-11565716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:129-603
               
               
               Cow position:chr8:42440453-42439979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:310
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:130-501
               
               
               Cow position:chr8:31212736-31212371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 208

               
               
               Conread position:138-599
               
               
               Cow position:chr8:21584675-21585151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:142-499
               
               
               Cow position:chr8:42469168-42469514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 76

               
               
               Conread position:143-436
               
               
               Cow position:chr8:20135955-20135649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:143-599
               
               
               Cow position:chr8:22940420-22939970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):262, 27

               
               
               Conread position:157-601
               
               
               Cow position:chr8:30155620-30156070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:158-642
               
               
               Cow position:chr8:39819959-39820474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 191

               
               
               Conread position:158-643
               
               
               Cow position:chr8:3748693-3748177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 192

               
               
               Conread position:161-578
               
               
               Cow position:chr8:8309749-8310157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:161-601
               
               
               Cow position:chr8:44700503-44700950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 148

               
               
               Conread position:161-601
               
               
               Cow position:chr8:50358782-50358330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:161-642
               
               
               Cow position:chr8:25438056-25438553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 35

               
               
               Conread position:161-643
               
               
               Cow position:chr8:24914802-24914298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:162-469
               
               
               Cow position:chr8:32648025-32648324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:162-514
               
               
               Cow position:chr8:45184932-45185280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:163-574
               
               
               Cow position:chr8:24871259-24870854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:163-601
               
               
               Cow position:chr8:16090371-16090802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):210, 14

               
               
               Conread position:163-643
               
               
               Cow position:chr8:45794238-45793733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:164-601
               
               
               Cow position:chr8:1450083-1450519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:164-643
               
               
               Cow position:chr8:12450558-12451063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:164-643
               
               
               Cow position:chr8:25775144-25774625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:167-501
               
               
               Cow position:chr8:41740274-41740595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 154

               
               
               Conread position:167-536
               
               
               Cow position:chr8:14583457-14583091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 113

               
               
               Conread position:171-601
               
               
               Cow position:chr8:18054257-18054700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:174-643
               
               
               Cow position:chr8:14590356-14589855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:179-643
               
               
               Cow position:chr8:38392156-38392648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:187-643
               
               
               Cow position:chr8:35470838-35471324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 162

               
               
               Conread position:187-643
               
               
               Cow position:chr8:50995324-50995809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:188-643
               
               
               Cow position:chr8:11834058-11834548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:194-642
               
               
               Cow position:chr8:42154725-42154265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:208-472
               
               
               Cow position:chr8:10365347-10365087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:209-608
               
               
               Cow position:chr8:11763515-11763928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 5

               
               
               Conread position:219-601
               
               
               Cow position:chr8:47490061-47490448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:221-643
               
               
               Cow position:chr8:17312633-17313055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:225-492
               
               
               Cow position:chr8:44956-44689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):165, 15

               
               
               Conread position:237-474
               
               
               Cow position:chr8:39591659-39591420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 52

               
               
               Conread position:238-601
               
               
               Cow position:chr8:41247770-41248136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 158

               
               
               Conread position:238-643
               
               
               Cow position:chr8:12313812-12313381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 123

               
               
               Conread position:239-563
               
               
               Cow position:chr8:9639473-9639808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 5

               
               
               Conread position:241-528
               
               
               Cow position:chr8:14348164-14347884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:244-564
               
               
               Cow position:chr8:18210849-18210533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):150, 15

               
               
               Conread position:245-643
               
               
               Cow position:chr8:49218327-49218764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 102

               
               
               Conread position:256-354
               
               
               Cow position:chr8:1118166-1118264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:256-608
               
               
               Cow position:chr8:38576580-38576212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 71

               
               
               Conread position:256-631
               
               
               Cow position:chr8:46421682-46422054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:259-385
               
               
               Cow position:chr8:20991555-20991679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:262-601
               
               
               Cow position:chr8:19332192-19332542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 77

               
               
               Conread position:266-643
               
               
               Cow position:chr8:25412244-25412644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:273-504
               
               
               Cow position:chr8:13316255-13316491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 48

               
               
               Conread position:274-601
               
               
               Cow position:chr8:21250856-21251195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:280-593
               
               
               Cow position:chr8:24887302-24887615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:287-598
               
               
               Cow position:chr8:47947735-47948053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 54

               
               
               Conread position:292-642
               
               
               Cow position:chr8:51068349-51067975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 50

               
               
               Conread position:318-601
               
               
               Cow position:chr8:44108817-44109114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:320-603
               
               
               Cow position:chr8:2386864-2387160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:323-601
               
               
               Cow position:chr8:12804461-12804745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:328-601
               
               
               Cow position:chr8:48103532-48103811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:338-643
               
               
               Cow position:chr8:38605480-38605168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:352-643
               
               
               Cow position:chr8:1121089-1121399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:356-601
               
               
               Cow position:chr8:42429390-42429642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:356-626
               
               
               Cow position:chr8:24228006-24228274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:368-601
               
               
               Cow position:chr8:36920078-36920320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:388-643
               
               
               Cow position:chr8:29923605-29923329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:396-644
               
               
               Cow position:chr8:50432372-50432120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 85

               
               
               Conread position:403-601
               
               
               Cow position:chr8:24190727-24190935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:405-601
               
               
               Cow position:chr8:49856566-49856373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:406-601
               
               
               Cow position:chr8:9944156-9943957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:423-642
               
               
               Cow position:chr8:41949020-41949249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:425-642
               
               
               Cow position:chr8:49295263-49295031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:429-609
               
               
               Cow position:chr8:40891507-40891319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:433-599
               
               
               Cow position:chr8:44241897-44241724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:440-638
               
               
               Cow position:chr8:45158725-45158509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:452-643
               
               
               Cow position:chr8:45357748-45357539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 179

               
               
               Conread position:467-632
               
               
               Cow position:chr8:38194260-38194442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:480-636
               
               
               Cow position:chr8:46060131-46059957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:507-642
               
               
               Cow position:chr8:44158-44023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 95

               
               
               Conread position:1-166
               
               
               Cow position:chr9:22432256-22432431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:1-585
               
               
               Cow position:chr9:26083574-26082954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 225

               
               
               Conread position:1-601
               
               
               Cow position:chr9:20939301-20939931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 43

               
               
               Conread position:2-532
               
               
               Cow position:chr9:3727586-3728133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:2-593
               
               
               Cow position:chr9:25633031-25632400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:416
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):19, 334

               
               
               Conread position:4-504
               
               
               Cow position:chr9:7158960-7158425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 306

               
               
               Conread position:5-601
               
               
               Cow position:chr9:3309615-3310236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:5-601
               
               
               Cow position:chr9:51181189-51180558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 361

               
               
               Conread position:5-642
               
               
               Cow position:chr9:47042947-47043635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 364

               
               
               Conread position:7-415
               
               
               Cow position:chr9:2053915-2054341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:7-464
               
               
               Cow position:chr9:3005246-3004766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 187

               
               
               Conread position:12-603
               
               
               Cow position:chr9:37970212-37969585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 218

               
               
               Conread position:16-292
               
               
               Cow position:chr9:3372305-3372024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):131, 73

               
               
               Conread position:16-436
               
               
               Cow position:chr9:2497978-2497525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:16-496
               
               
               Cow position:chr9:22192284-22192784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:333
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 271

               
               
               Conread position:16-538
               
               
               Cow position:chr9:1981273-1981819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:16-597
               
               
               Cow position:chr9:2871328-2871950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 373

               
               
               Conread position:16-599
               
               
               Cow position:chr9:4942808-4942188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:16-601
               
               
               Cow position:chr9:25188098-25188711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 329

               
               
               Conread position:16-601
               
               
               Cow position:chr9:31808576-31809197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 356

               
               
               Conread position:16-601
               
               
               Cow position:chr9:54925553-54926157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:16-604
               
               
               Cow position:chr9:8165881-8165273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:403
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 264

               
               
               Conread position:16-629
               
               
               Cow position:chr9:221510-220882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 229

               
               
               Conread position:16-637
               
               
               Cow position:chr9:59428009-59428667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:16-642
               
               
               Cow position:chr9:50698302-50698965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 265

               
               
               Conread position:16-643
               
               
               Cow position:chr9:7061081-7060391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 356

               
               
               Conread position:16-643
               
               
               Cow position:chr9:44819147-44819808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:17-321
               
               
               Cow position:chr9:10322803-10323134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:17-344
               
               
               Cow position:chr9:16176769-16177104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:17-422
               
               
               Cow position:chr9:60277015-60276584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:17-423
               
               
               Cow position:chr9:29027211-29026773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 352

               
               
               Conread position:17-497
               
               
               Cow position:chr9:56807366-56806868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:310
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:17-504
               
               
               Cow position:chr9:22654576-22655097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 351

               
               
               Conread position:17-550
               
               
               Cow position:chr9:10937595-10938164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:17-564
               
               
               Cow position:chr9:32969948-32970527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:17-601
               
               
               Cow position:chr9:59537098-59537723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 369

               
               
               Conread position:17-637
               
               
               Cow position:chr9:18508822-18508158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 347

               
               
               Conread position:17-643
               
               
               Cow position:chr9:17304976-17304301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 349

               
               
               Conread position:17-643
               
               
               Cow position:chr9:19158539-19157854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 178

               
               
               Conread position:17-643
               
               
               Cow position:chr9:21410297-21410980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 375

               
               
               Conread position:17-643
               
               
               Cow position:chr9:27783188-27783860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 307

               
               
               Conread position:17-643
               
               
               Cow position:chr9:28022806-28023474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 134

               
               
               Conread position:17-643
               
               
               Cow position:chr9:42310678-42311366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 288

               
               
               Conread position:17-644
               
               
               Cow position:chr9:6250299-6250959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:18-588
               
               
               Cow position:chr9:4666189-4666784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:18-642
               
               
               Cow position:chr9:4649597-4648970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:396
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:18-643
               
               
               Cow position:chr9:9014099-9014745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:41-482
               
               
               Cow position:chr9:62736756-62736312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 170

               
               
               Conread position:64-642
               
               
               Cow position:chr9:46042176-46041577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 5

               
               
               Conread position:67-601
               
               
               Cow position:chr9:60462842-60462318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:68-579
               
               
               Cow position:chr9:17901503-17900977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:69-238
               
               
               Cow position:chr9:5798736-5798550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-307
               
               
               Cow position:chr9:22089578-22089822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:69-385
               
               
               Cow position:chr9:46859401-46859067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 290

               
               
               Conread position:69-564
               
               
               Cow position:chr9:35315819-35315287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 50

               
               
               Conread position:69-586
               
               
               Cow position:chr9:46460989-46460462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:343
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:69-596
               
               
               Cow position:chr9:5141773-5142314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:69-601
               
               
               Cow position:chr9:4283028-4283579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 299

               
               
               Conread position:69-601
               
               
               Cow position:chr9:27935438-27936002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 293

               
               
               Conread position:69-603
               
               
               Cow position:chr9:51211742-51212305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 229

               
               
               Conread position:69-608
               
               
               Cow position:chr9:779760-779193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 195

               
               
               Conread position:69-632
               
               
               Cow position:chr9:50791774-50792379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:69-642
               
               
               Cow position:chr9:1250939-1250323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 300

               
               
               Conread position:69-642
               
               
               Cow position:chr9:25034503-25033892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chr9:28679033-28679630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 275

               
               
               Conread position:69-642
               
               
               Cow position:chr9:31065779-31066393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 216

               
               
               Conread position:69-643
               
               
               Cow position:chr9:64015586-64014996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:69-644
               
               
               Cow position:chr9:30827798-30828415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 301

               
               
               Conread position:72-463
               
               
               Cow position:chr9:3963066-3962647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 285

               
               
               Conread position:73-280
               
               
               Cow position:chr9:26736818-26737044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 198

               
               
               Conread position:73-414
               
               
               Cow position:chr9:3764064-3764410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 233

               
               
               Conread position:73-436
               
               
               Cow position:chr9:59481731-59481348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 282

               
               
               Conread position:73-446
               
               
               Cow position:chr9:47003251-47003637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 166

               
               
               Conread position:73-482
               
               
               Cow position:chr9:49303592-49303181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:73-490
               
               
               Cow position:chr9:39730993-39730566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 155

               
               
               Conread position:73-600
               
               
               Cow position:chr9:4533559-4534115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:73-601
               
               
               Cow position:chr9:130099-129574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:73-601
               
               
               Cow position:chr9:828043-827487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 286

               
               
               Conread position:73-601
               
               
               Cow position:chr9:2212203-2212761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 288

               
               
               Conread position:73-601
               
               
               Cow position:chr9:30673440-30674001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 291

               
               
               Conread position:73-601
               
               
               Cow position:chr9:38677209-38677766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 286

               
               
               Conread position:73-632
               
               
               Cow position:chr9:44384325-44384911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chr9:17063318-17062711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 285

               
               
               Conread position:73-643
               
               
               Cow position:chr9:1995325-1994732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 287

               
               
               Conread position:73-644
               
               
               Cow position:chr9:13474706-13474094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 288

               
               
               Conread position:73-647
               
               
               Cow position:chr9:650962-650346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 220

               
               
               Conread position:74-385
               
               
               Cow position:chr9:3167995-3168300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:74-564
               
               
               Cow position:chr9:3936367-3935872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 130

               
               
               Conread position:75-643
               
               
               Cow position:chr9:37161745-37161142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 283

               
               
               Conread position:76-462
               
               
               Cow position:chr9:4836273-4835871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):67, 281

               
               
               Conread position:76-601
               
               
               Cow position:chr9:24980856-24980326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:347
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 223

               
               
               Conread position:76-644
               
               
               Cow position:chr9:3224551-3223976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:77-601
               
               
               Cow position:chr9:8402439-8402976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:371
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:78-500
               
               
               Cow position:chr9:29627687-29627237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 287

               
               
               Conread position:78-599
               
               
               Cow position:chr9:35595009-35594464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 227

               
               
               Conread position:78-601
               
               
               Cow position:chr9:1075119-1074554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 294

               
               
               Conread position:85-575
               
               
               Cow position:chr9:2866892-2866386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:97-387
               
               
               Cow position:chr9:30191294-30190994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 199

               
               
               Conread position:99-642
               
               
               Cow position:chr9:2679360-2679947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:118-586
               
               
               Cow position:chr9:1637973-1638469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 189

               
               
               Conread position:119-467
               
               
               Cow position:chr9:26553697-26554038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:141-608
               
               
               Cow position:chr9:2172087-2172574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 208

               
               
               Conread position:142-434
               
               
               Cow position:chr9:59447652-59447956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):26, 146

               
               
               Conread position:142-482
               
               
               Cow position:chr9:12725141-12725478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:144-599
               
               
               Cow position:chr9:7003870-7004353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 212

               
               
               Conread position:149-601
               
               
               Cow position:chr9:34724664-34725125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:154-642
               
               
               Cow position:chr9:50094081-50093562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 195

               
               
               Conread position:157-464
               
               
               Cow position:chr9:7105268-7104950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:157-601
               
               
               Cow position:chr9:22436132-22436572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:157-603
               
               
               Cow position:chr9:45874686-45875138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:157-635
               
               
               Cow position:chr9:26567764-26568261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 122

               
               
               Conread position:162-478
               
               
               Cow position:chr9:7040760-7041081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):227, 58

               
               
               Conread position:163-600
               
               
               Cow position:chr9:30488772-30489209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:164-579
               
               
               Cow position:chr9:49515306-49514883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:164-643
               
               
               Cow position:chr9:5005151-5005660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:164-643
               
               
               Cow position:chr9:27036082-27036575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 7

               
               
               Conread position:167-564
               
               
               Cow position:chr9:20176542-20176139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 184

               
               
               Conread position:167-593
               
               
               Cow position:chr9:30435755-30436174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:171-375
               
               
               Cow position:chr9:3544055-3544267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 197

               
               
               Conread position:171-601
               
               
               Cow position:chr9:4717358-4717790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 12

               
               
               Conread position:171-642
               
               
               Cow position:chr9:2210931-2211436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 216

               
               
               Conread position:171-643
               
               
               Cow position:chr9:9313938-9313482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:185-601
               
               
               Cow position:chr9:13119100-13118686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):211, 26

               
               
               Conread position:188-601
               
               
               Cow position:chr9:10547853-10548272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:188-601
               
               
               Cow position:chr9:12912969-12913404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:191-525
               
               
               Cow position:chr9:9211834-9211508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:194-601
               
               
               Cow position:chr9:43664916-43665289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:198-642
               
               
               Cow position:chr9:8781708-8781253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 150

               
               
               Conread position:215-567
               
               
               Cow position:chr9:47545423-47545780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:216-504
               
               
               Cow position:chr9:56155787-56155504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:220-601
               
               
               Cow position:chr9:9707361-9707740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):165, 11

               
               
               Conread position:240-643
               
               
               Cow position:chr9:26737164-26737596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):149, 8

               
               
               Conread position:241-642
               
               
               Cow position:chr9:25903775-25904196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:244-642
               
               
               Cow position:chr9:26102008-26101595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):265, 96

               
               
               Conread position:255-575
               
               
               Cow position:chr9:29332516-29332842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):138, 84

               
               
               Conread position:292-601
               
               
               Cow position:chr9:4308060-4307743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:297-601
               
               
               Cow position:chr9:14040850-14040540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:324-601
               
               
               Cow position:chr9:10976448-10976737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:333-599
               
               
               Cow position:chr9:64026778-64027052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:344-601
               
               
               Cow position:chr9:28000873-28001146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:368-599
               
               
               Cow position:chr9:29789305-29789068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:388-580
               
               
               Cow position:chr9:30300830-30300628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:397-594
               
               
               Cow position:chr9:54681338-54681132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:410-601
               
               
               Cow position:chr9:59509737-59509539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:410-642
               
               
               Cow position:chr9:56303028-56302777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:419-603
               
               
               Cow position:chr9:6709391-6709582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:428-643
               
               
               Cow position:chr9:29026481-29026250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:429-639
               
               
               Cow position:chr9:3804796-3805019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 218

               
               
               Conread position:430-601
               
               
               Cow position:chr9:2000705-2000528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):74, 151

               
               
               Conread position:441-643
               
               
               Cow position:chr9:47004186-47004406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:452-601
               
               
               Cow position:chr9:17312845-17312999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:459-601
               
               
               Cow position:chr9:203821-203672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:485-642
               
               
               Cow position:chr9:34769642-34769819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:502-601
               
               
               Cow position:chr9:31090700-31090800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:2-287
               
               
               Cow position:chrX:13053918-13054217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:2-580
               
               
               Cow position:chrX:19875422-19876013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:2-601
               
               
               Cow position:chrX:28561002-28560361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 370

               
               
               Conread position:5-642
               
               
               Cow position:chrX:15178542-15177854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:7-223
               
               
               Cow position:chrX:23132864-23133099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:7-601
               
               
               Cow position:chrX:12668854-12668218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 372

               
               
               Conread position:7-601
               
               
               Cow position:chrX:21341288-21341932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 296

               
               
               Conread position:7-603
               
               
               Cow position:chrX:29885885-29886519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 362

               
               
               Conread position:7-642
               
               
               Cow position:chrX:2577322-2578004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 95

               
               
               Conread position:12-536
               
               
               Cow position:chrX:15486868-15486333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:16-153
               
               
               Cow position:chrX:6241699-6241553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:16-227
               
               
               Cow position:chrX:15590892-15591119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:16-338
               
               
               Cow position:chrX:8610795-8610449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:16-378
               
               
               Cow position:chrX:4797230-4797568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:16-414
               
               
               Cow position:chrX:22816765-22817171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 70

               
               
               Conread position:16-446
               
               
               Cow position:chrX:29286339-29286797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 195

               
               
               Conread position:16-504
               
               
               Cow position:chrX:21059689-21060191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 213

               
               
               Conread position:16-537
               
               
               Cow position:chrX:21589897-21590445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 322

               
               
               Conread position:16-578
               
               
               Cow position:chrX:29793126-29792528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:16-601
               
               
               Cow position:chrX:27961764-27962359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 345

               
               
               Conread position:16-601
               
               
               Cow position:chrX:28650647-28650037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:16-601
               
               
               Cow position:chrX:30170925-30170323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 352

               
               
               Conread position:16-602
               
               
               Cow position:chrX:31053768-31053186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:16-608
               
               
               Cow position:chrX:24134354-24133757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 246

               
               
               Conread position:16-626
               
               
               Cow position:chrX:29949694-29949057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 265

               
               
               Conread position:16-641
               
               
               Cow position:chrX:5669735-5669127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:403
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):130, 44

               
               
               Conread position:16-642
               
               
               Cow position:chrX:30068940-30068260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 8

               
               
               Conread position:16-643
               
               
               Cow position:chrX:39563028-39562370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:17-335
               
               
               Cow position:chrX:7541109-7541444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:17-504
               
               
               Cow position:chrX:35940343-35939860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:17-601
               
               
               Cow position:chrX:15600067-15600674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 239

               
               
               Conread position:17-601
               
               
               Cow position:chrX:27593081-27592461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 350

               
               
               Conread position:17-601
               
               
               Cow position:chrX:30183030-30182399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 360

               
               
               Conread position:17-601
               
               
               Cow position:chrX:31199468-31200085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 247

               
               
               Conread position:17-603
               
               
               Cow position:chrX:20798227-20798834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:17-638
               
               
               Cow position:chrX:23020230-23020872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 47

               
               
               Conread position:17-642
               
               
               Cow position:chrX:13412226-13411548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:17-642
               
               
               Cow position:chrX:18952775-18952096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 201

               
               
               Conread position:17-643
               
               
               Cow position:chrX:321372-322047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 308

               
               
               Conread position:17-643
               
               
               Cow position:chrX:971689-972360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 236

               
               
               Conread position:17-643
               
               
               Cow position:chrX:12480900-12481578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 299

               
               
               Conread position:17-643
               
               
               Cow position:chrX:21830436-21831096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 227

               
               
               Conread position:17-643
               
               
               Cow position:chrX:23277933-23278605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 364

               
               
               Conread position:17-643
               
               
               Cow position:chrX:23389609-23388954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 292

               
               
               Conread position:17-643
               
               
               Cow position:chrX:23455111-23454437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 283

               
               
               Conread position:17-643
               
               
               Cow position:chrX:26757708-26757046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 234

               
               
               Conread position:17-643
               
               
               Cow position:chrX:27316182-27316860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:17-643
               
               
               Cow position:chrX:38148502-38149173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 307

               
               
               Conread position:18-600
               
               
               Cow position:chrX:36136645-36136046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 304

               
               
               Conread position:18-613
               
               
               Cow position:chrX:4752719-4752080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 269

               
               
               Conread position:18-642
               
               
               Cow position:chrX:35386272-35385647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 6

               
               
               Conread position:18-643
               
               
               Cow position:chrX:6281847-6281201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 142

               
               
               Conread position:18-643
               
               
               Cow position:chrX:26766293-26765616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 371

               
               
               Conread position:19-422
               
               
               Cow position:chrX:16463407-16462978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:19-601
               
               
               Cow position:chrX:2481723-2481104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:19-603
               
               
               Cow position:chrX:17052451-17053082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 352

               
               
               Conread position:22-601
               
               
               Cow position:chrX:28626704-28626115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:23-315
               
               
               Cow position:chrX:35025965-35026277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:24-571
               
               
               Cow position:chrX:12314838-12314266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 291

               
               
               Conread position:27-525
               
               
               Cow position:chrX:46235659-46236190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:41-476
               
               
               Cow position:chrX:44388704-44389157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:66-601
               
               
               Cow position:chrX:17477460-17476891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 296

               
               
               Conread position:67-296
               
               
               Cow position:chrX:8574525-8574285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:67-563
               
               
               Cow position:chrX:24476221-24475715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:345
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:67-569
               
               
               Cow position:chrX:20874079-20873556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:333
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:67-599
               
               
               Cow position:chrX:27986857-27986303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:67-642
               
               
               Cow position:chrX:7752865-7753481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 301

               
               
               Conread position:67-642
               
               
               Cow position:chrX:28521630-28521023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 281

               
               
               Conread position:68-601
               
               
               Cow position:chrX:30011965-30012528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 292

               
               
               Conread position:69-300
               
               
               Cow position:chrX:983631-983882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-324
               
               
               Cow position:chrX:5864361-5864636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:69-340
               
               
               Cow position:chrX:7482599-7482890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:69-388
               
               
               Cow position:chrX:13182159-13181851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:69-392
               
               
               Cow position:chrX:12287436-12287097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 281

               
               
               Conread position:69-431
               
               
               Cow position:chrX:5335518-5335128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-564
               
               
               Cow position:chrX:20695854-20695344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 65

               
               
               Conread position:69-596
               
               
               Cow position:chrX:13397252-13396695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-598
               
               
               Cow position:chrX:14460491-14461034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 185

               
               
               Conread position:69-600
               
               
               Cow position:chrX:37015090-37015644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 237

               
               
               Conread position:69-601
               
               
               Cow position:chrX:3084170-3083609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 202

               
               
               Conread position:69-601
               
               
               Cow position:chrX:12702736-12702173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:69-601
               
               
               Cow position:chrX:14784499-14783947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 285

               
               
               Conread position:69-601
               
               
               Cow position:chrX:24324605-24324036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 209

               
               
               Conread position:69-601
               
               
               Cow position:chrX:29172795-29172238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-603
               
               
               Cow position:chrX:2535102-2534552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 310

               
               
               Conread position:69-606
               
               
               Cow position:chrX:13075729-13075169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 292

               
               
               Conread position:69-606
               
               
               Cow position:chrX:13096292-13095730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 292

               
               
               Conread position:69-632
               
               
               Cow position:chrX:12653556-12652934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:69-632
               
               
               Cow position:chrX:18451946-18452552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 293

               
               
               Conread position:69-642
               
               
               Cow position:chrX:2561892-2561274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 289

               
               
               Conread position:69-642
               
               
               Cow position:chrX:2815514-2814901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 200

               
               
               Conread position:69-642
               
               
               Cow position:chrX:2858408-2857795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 200

               
               
               Conread position:69-642
               
               
               Cow position:chrX:3374941-3374327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 234

               
               
               Conread position:69-642
               
               
               Cow position:chrX:3467679-3467065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:69-642
               
               
               Cow position:chrX:5282813-5282203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 53

               
               
               Conread position:69-642
               
               
               Cow position:chrX:11422838-11423453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 291

               
               
               Conread position:69-642
               
               
               Cow position:chrX:12343903-12344523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 293

               
               
               Conread position:69-642
               
               
               Cow position:chrX:15623533-15622922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 244

               
               
               Conread position:69-642
               
               
               Cow position:chrX:15979991-15979377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 289

               
               
               Conread position:69-642
               
               
               Cow position:chrX:27425358-27424740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 294

               
               
               Conread position:69-642
               
               
               Cow position:chrX:27619166-27618554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 293

               
               
               Conread position:69-642
               
               
               Cow position:chrX:28585947-28586563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 225

               
               
               Conread position:69-642
               
               
               Cow position:chrX:29935564-29936180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:69-642
               
               
               Cow position:chrX:30201764-30201155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 285

               
               
               Conread position:69-643
               
               
               Cow position:chrX:37813119-37813728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 123

               
               
               Conread position:70-423
               
               
               Cow position:chrX:12354203-12354578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 289

               
               
               Conread position:70-446
               
               
               Cow position:chrX:8962604-8962206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:70-601
               
               
               Cow position:chrX:16811477-16810918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:70-641
               
               
               Cow position:chrX:18220391-18221000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 255

               
               
               Conread position:70-642
               
               
               Cow position:chrX:41850233-41849642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:72-599
               
               
               Cow position:chrX:5651666-5651148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:73-239
               
               
               Cow position:chrX:22618338-22618154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:73-283
               
               
               Cow position:chrX:9093545-9093777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:73-338
               
               
               Cow position:chrX:25430317-25430047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:73-375
               
               
               Cow position:chrX:26578643-26578957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:73-407
               
               
               Cow position:chrX:1834789-1835138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:73-407
               
               
               Cow position:chrX:26999551-26999883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:73-422
               
               
               Cow position:chrX:45377129-45376752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):95, 18

               
               
               Conread position:73-443
               
               
               Cow position:chrX:30058021-30058412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 242

               
               
               Conread position:73-445
               
               
               Cow position:chrX:26426611-26426226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 182

               
               
               Conread position:73-504
               
               
               Cow position:chrX:23040152-23039700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 241

               
               
               Conread position:73-514
               
               
               Cow position:chrX:24195440-24194989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:313
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:73-543
               
               
               Cow position:chrX:34219283-34219765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:73-564
               
               
               Cow position:chrX:41102495-41101982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 280

               
               
               Conread position:73-569
               
               
               Cow position:chrX:29097167-29097693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 287

               
               
               Conread position:73-577
               
               
               Cow position:chrX:28868274-28867750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 228

               
               
               Conread position:73-584
               
               
               Cow position:chrX:43072762-43073256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:342
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):344, 60

               
               
               Conread position:73-599
               
               
               Cow position:chrX:6013979-6013446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:73-599
               
               
               Cow position:chrX:18535424-18535926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 83

               
               
               Conread position:73-601
               
               
               Cow position:chrX:3420240-3419686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:73-601
               
               
               Cow position:chrX:5296573-5296023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:73-601
               
               
               Cow position:chrX:5356852-5356295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 282

               
               
               Conread position:73-601
               
               
               Cow position:chrX:6872099-6871547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:73-601
               
               
               Cow position:chrX:8589133-8589708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 285

               
               
               Conread position:73-601
               
               
               Cow position:chrX:17609351-17608800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:358
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):71, 300

               
               
               Conread position:73-601
               
               
               Cow position:chrX:18658823-18658279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 191

               
               
               Conread position:73-601
               
               
               Cow position:chrX:21643934-21643384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 287

               
               
               Conread position:73-601
               
               
               Cow position:chrX:24771892-24771333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 285

               
               
               Conread position:73-601
               
               
               Cow position:chrX:32066196-32065639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 135

               
               
               Conread position:73-631
               
               
               Cow position:chrX:16362151-16361550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:73-633
               
               
               Cow position:chrX:15126255-15125661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 284

               
               
               Conread position:73-641
               
               
               Cow position:chrX:30231126-30230531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 217

               
               
               Conread position:73-642
               
               
               Cow position:chrX:674231-673625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 185

               
               
               Conread position:73-642
               
               
               Cow position:chrX:9009310-9009918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:73-642
               
               
               Cow position:chrX:11148365-11147751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 289

               
               
               Conread position:73-642
               
               
               Cow position:chrX:16276618-16277231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 265

               
               
               Conread position:73-642
               
               
               Cow position:chrX:17666813-17666216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:73-642
               
               
               Cow position:chrX:27083938-27084555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 288

               
               
               Conread position:73-642
               
               
               Cow position:chrX:29910458-29909843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 305

               
               
               Conread position:73-642
               
               
               Cow position:chrX:30365812-30365221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 141

               
               
               Conread position:73-643
               
               
               Cow position:chrX:7031434-7032035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 307

               
               
               Conread position:73-643
               
               
               Cow position:chrX:26528946-26529546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 144

               
               
               Conread position:73-644
               
               
               Cow position:chrX:21491125-21491742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 197

               
               
               Conread position:74-353
               
               
               Cow position:chrX:18553402-18553690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 60

               
               
               Conread position:74-514
               
               
               Cow position:chrX:10385274-10385735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:300
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:74-632
               
               
               Cow position:chrX:1547951-1548551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 237

               
               
               Conread position:77-603
               
               
               Cow position:chrX:5322752-5322197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 280

               
               
               Conread position:77-642
               
               
               Cow position:chrX:35530828-35531437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 285

               
               
               Conread position:78-556
               
               
               Cow position:chrX:30138601-30138093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 223

               
               
               Conread position:78-601
               
               
               Cow position:chrX:14595821-14596376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:79-642
               
               
               Cow position:chrX:12183914-12184522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 235

               
               
               Conread position:80-601
               
               
               Cow position:chrX:505205-504682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:365
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:85-642
               
               
               Cow position:chrX:20035419-20034819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:87-601
               
               
               Cow position:chrX:26399143-26398597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 275

               
               
               Conread position:87-643
               
               
               Cow position:chrX:21269053-21268480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 32

               
               
               Conread position:98-642
               
               
               Cow position:chrX:13447831-13447244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 217

               
               
               Conread position:98-642
               
               
               Cow position:chrX:16684841-16684254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 260

               
               
               Conread position:107-601
               
               
               Cow position:chrX:15041528-15041015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:125-642
               
               
               Cow position:chrX:23212996-23212465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:349
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:130-579
               
               
               Cow position:chrX:41887963-41887493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:141-418
               
               
               Cow position:chrX:15144864-15144566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):27, 221

               
               
               Conread position:142-563
               
               
               Cow position:chrX:30130672-30130262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:142-599
               
               
               Cow position:chrX:32123105-32123585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 125

               
               
               Conread position:148-642
               
               
               Cow position:chrX:21753378-21752860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 198

               
               
               Conread position:157-600
               
               
               Cow position:chrX:28506202-28505741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:157-603
               
               
               Cow position:chrX:39694714-39695171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:157-642
               
               
               Cow position:chrX:28757578-28757062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 192

               
               
               Conread position:161-423
               
               
               Cow position:chrX:12284012-12284276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:161-601
               
               
               Cow position:chrX:22567184-22566727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 185

               
               
               Conread position:162-385
               
               
               Cow position:chrX:4330225-4330016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:163-385
               
               
               Cow position:chrX:24523824-24524058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:163-568
               
               
               Cow position:chrX:25613131-25613544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:163-601
               
               
               Cow position:chrX:10707934-10708352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 31

               
               
               Conread position:163-601
               
               
               Cow position:chrX:19725920-19725471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 188

               
               
               Conread position:163-601
               
               
               Cow position:chrX:28554706-28555163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:163-642
               
               
               Cow position:chrX:16780373-16780864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 37

               
               
               Conread position:165-599
               
               
               Cow position:chrX:33715598-33715174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:171-601
               
               
               Cow position:chrX:38691916-38692342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 6

               
               
               Conread position:174-601
               
               
               Cow position:chrX:17525632-17525188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:180-601
               
               
               Cow position:chrX:13054925-13055349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:181-642
               
               
               Cow position:chrX:27495803-27496295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 165

               
               
               Conread position:182-373
               
               
               Cow position:chrX:691170-691360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 151

               
               
               Conread position:182-591
               
               
               Cow position:chrX:26773202-26772802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:187-643
               
               
               Cow position:chrX:16700796-16701273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:187-643
               
               
               Cow position:chrX:21580581-21581067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:187-643
               
               
               Cow position:chrX:22489251-22489738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:196-601
               
               
               Cow position:chrX:30070777-30071201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:196-643
               
               
               Cow position:chrX:16037326-16036865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:197-501
               
               
               Cow position:chrX:20927295-20927605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 21

               
               
               Conread position:215-489
               
               
               Cow position:chrX:23133319-23133595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:215-601
               
               
               Cow position:chrX:36237461-36237861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 128

               
               
               Conread position:215-637
               
               
               Cow position:chrX:32327303-32327733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 34

               
               
               Conread position:216-422
               
               
               Cow position:chrX:20019012-20019222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:216-642
               
               
               Cow position:chrX:20333431-20332978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 128

               
               
               Conread position:216-642
               
               
               Cow position:chrX:37957921-37957473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 14

               
               
               Conread position:223-601
               
               
               Cow position:chrX:3580172-3580562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 28

               
               
               Conread position:223-604
               
               
               Cow position:chrX:2144107-2144501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 118

               
               
               Conread position:223-643
               
               
               Cow position:chrX:22618061-22617622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 77

               
               
               Conread position:227-602
               
               
               Cow position:chrX:16861032-16860651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:232-601
               
               
               Cow position:chrX:5393699-5393318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 110

               
               
               Conread position:232-601
               
               
               Cow position:chrX:37850279-37850660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 110

               
               
               Conread position:242-482
               
               
               Cow position:chrX:40849714-40849956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):147, 79

               
               
               Conread position:245-641
               
               
               Cow position:chrX:16848715-16848312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:256-643
               
               
               Cow position:chrX:11463875-11463465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 86

               
               
               Conread position:259-388
               
               
               Cow position:chrX:39388434-39388309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:259-586
               
               
               Cow position:chrX:23328628-23328290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:274-600
               
               
               Cow position:chrX:4300993-4300660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 51

               
               
               Conread position:274-643
               
               
               Cow position:chrX:21224664-21225053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:276-643
               
               
               Cow position:chrX:9093835-9094225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:277-619
               
               
               Cow position:chrX:6198005-6197672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):110, 65

               
               
               Conread position:278-642
               
               
               Cow position:chrX:30436038-30436426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 64

               
               
               Conread position:280-601
               
               
               Cow position:chrX:12667313-12667645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:285-601
               
               
               Cow position:chrX:6241230-6240905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:286-600
               
               
               Cow position:chrX:21316659-21316978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 56

               
               
               Conread position:287-601
               
               
               Cow position:chrX:45419035-45418719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 11

               
               
               Conread position:288-614
               
               
               Cow position:chrX:20184448-20184779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:295-642
               
               
               Cow position:chrX:28664608-28664977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:298-580
               
               
               Cow position:chrX:2977878-2977584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:307-642
               
               
               Cow position:chrX:7094691-7095050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:313-600
               
               
               Cow position:chrX:23525130-23524833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:318-601
               
               
               Cow position:chrX:12836085-12835787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:319-601
               
               
               Cow position:chrX:29096091-29095797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:321-643
               
               
               Cow position:chrX:29852476-29852136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:332-601
               
               
               Cow position:chrX:22127892-22127608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:334-601
               
               
               Cow position:chrX:43791907-43791630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:339-643
               
               
               Cow position:chrX:42477561-42477234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:342-595
               
               
               Cow position:chrX:36837959-36838211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:359-599
               
               
               Cow position:chrX:34836835-34836585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:389-588
               
               
               Cow position:chrX:35026283-35026488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:389-601
               
               
               Cow position:chrX:5367843-5367625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:389-643
               
               
               Cow position:chrX:27979511-27979237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 195

               
               
               Conread position:390-642
               
               
               Cow position:chrX:1942058-1941784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:394-601
               
               
               Cow position:chrX:12463090-12463304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:398-601
               
               
               Cow position:chrX:3622402-3622613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:399-601
               
               
               Cow position:chrX:47385300-47385089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:401-581
               
               
               Cow position:chrX:16463624-16463812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:403-601
               
               
               Cow position:chrX:22817384-22817586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):17, 135

               
               
               Conread position:403-644
               
               
               Cow position:chrX:21791935-21792196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):23, 251

               
               
               Conread position:408-601
               
               
               Cow position:chrX:29940561-29940764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:410-601
               
               
               Cow position:chrX:11459508-11459310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:419-601
               
               
               Cow position:chrX:12354863-12355051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 144

               
               
               Conread position:421-601
               
               
               Cow position:chrX:45376651-45376458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:426-602
               
               
               Cow position:chrX:36072395-36072212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:426-627
               
               
               Cow position:chrX:17612424-17612212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:428-642
               
               
               Cow position:chrX:10530440-10530208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:434-641
               
               
               Cow position:chrX:2380864-2381083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:445-643
               
               
               Cow position:chrX:20724332-20724548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:465-642
               
               
               Cow position:chrX:21507782-21507586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0